The complete mitochondrial genome of Caprella scaura (Crustacea, Amphipoda, Caprellidea), with emphasis on the unique gene order pattern and duplicated control region

References

• Bauza-Ribot MM, Jaume D, Juan C, Pons J. 2009. The complete mitochondrial genome of the subterranean crustacean Metacrangonyx longipes (Amphipoda): A unique gene order and extremely short control region. Mitochondrial DNA. 20:88–99.
   PubMed Web of Science ®Google Scholar
• Boore JL, Collins TM, Stanton D, Daehler LL, Brown WM. 1995. Deducing the pattern of arthropod phylogeny from mitochondrial DNA rearrangements. Nature. 376:163–165.
   PubMed Web of Science ®Google Scholar
• Boore JL, Lavrov DV, Brown WM. 1998. Gene translocation links insects and crustaceans. Nature. 392:667–668.
   PubMed Web of Science ®Google Scholar
• Cook CE. 2005. The complete mitochondrial genome of the stomatopod crustacean Squilla mantis. BMC Genomics. 6:105.
   PubMed Web of Science ®Google Scholar
• Cook CE, Yue Q, Akam M. 2005. Mitochondrial genomes suggest that hexapods and crustaceans are mutually paraphyletic. Proc R Soc Lond Ser B Biol Sci. 272:1295–1304.
   PubMed Web of Science ®Google Scholar
• Crozier RH, Crozier YC. 1993. The mitochondrial genome of the honeybee Apis mellifera: Complete sequence and genome organization. Genetics. 133:97–117.
   PubMed Web of Science ®Google Scholar
• France SC. 1993. Geographic-variation among 3 isolated populations of the hadal amphipod Hirondellea gigas (Crustacea, Amphipoda, Lysianassoidea). Mar Ecol Progr Ser. 92:277–287.
   Google Scholar
• Hickerson MJ, Cunnigham CW. 2005. Dramatic mitochondrial gene rearrangements in the hermit crab Pagurus longicarpus (Crustacea, Anomura). Mol Biol Evol. 17:639–644.
   Google Scholar
• Ito A, Wada H, Aoki MN. 2008. Phylogenetic analysis of caprellid and corophioid amphipods (Crustacea) based on the 18S rRNA gene, with special emphasis on the phylogenetic position of Phtisicidae. Biol Bull. 214:176–183.
   PubMed Web of Science ®Google Scholar
• Kilpert F, Podsiadlowski L. 2006. The complete mitochondrial genome of the common sea slater, Ligia oceanica (Crustacea, Isopoda) bears a novel gene order and unusual control region features. BMC Genomics. 7:241.
   PubMed Web of Science ®Google Scholar
• Kilpert F, Podsiadlowski L. 2010. The mitochondrial genome of the Japanese skeleton shrimp Caprella mutica (Amphipoda: Caprellidea) reveals a unique gene order and shanred apomorphic translocations with Gammaridea. Mitochondrial DNA. 21:77–86.
   PubMed Web of Science ®Google Scholar
• Kumazawa Y, Ota H, Nishida M, Ozawa T. 1998. The complete nucleotide sequence of a snake (Dinodon semicarinatus) mitochondrial genome with two identical control regions. Genetics. 150:313–329.
   PubMed Web of Science ®Google Scholar
• Marcade I, Cordaux R, Doublet V, Debenest C, Bouchon D, Raimond R. 2007. Dramatic mitochondrial gene rearrangements in the hermit crab Pagurus longicarpus (Crustacea, anomura). J Mol Evol. 65:651–659.
   PubMed Web of Science ®Google Scholar
• Miller AD, Nguyen TTT, Burridge CP, Austin CM. 2004. Complete mitochondrial DNA sequence of the Australian freshwater crayfish, Cherax destructor (Crustacea: Decapoda: Parastacidae): A novel gene order revealed. Gene. 331:65–72.
   PubMed Web of Science ®Google Scholar
• Miller AD, Murphy NP, Burridge CP, Austin CM. 2005. Complete mitochondrial DNA sequences of the decapod crustaceans Pseudocarcinus gigas (Menippidae) and Macrobrachium rosenbergii (Palaemonidae). Mar Biotechnol. 7:339–349.
   PubMed Web of Science ®Google Scholar
• Ogoh K, Ohmiya Y. 2004. Complete mitochondrial DNA sequence of the sea-firefly, Vargula hilgendorfii (Crustacea, Ostracoda) with duplicate control regions. Gene. 327:131–139.
   Google Scholar
• Ojala D, Montoya J, Attardi G. 1981. tRNA punctuation model of RNA processing in human mitochondria. Nature. 290:470–474.
   PubMed Web of Science ®Google Scholar
• Okimoto R, Wolstenholme DR. 1990. A set of tRNAs that lack either the T psi C arm or the dihydrouridine arm: Towards a minimal tRNA adaptor. EMBO J. 9:3405–3411.
   PubMedGoogle Scholar
• Podsiadlowski L, Bartolomaeus T. 2006. Major rearrangements characterize the mitochondrial genome of the isopod Idotea baltica (Crustacea: Peracarida). Mol Phylogenet Evol. 40:893–899.
   PubMedGoogle Scholar
• Segawa RD, Aotsuka T. 2005. The mitochondrial genome of the Japanese freshwater crab, Geothelphusa dehaani (Crustacea: Brachyura): Evidence for its evolution via gene duplication. Gene. 355:28–39.
   PubMed Web of Science ®Google Scholar
• Shao RF, Barker SC. 2003. The highly rearranged mitochondrial genome of the plague thrips, Thrips imaginis (Insecta: Thysanoptera): Convergence of two novel gene boundaries and an extraordinary arrangement of rRNA genes. Mol Biol Evol. 20:362–370.
   PubMed Web of Science ®Google Scholar
• Shao RF, Barker SC, Mitani H, Aoki Y, Fukunaga M. 2005. Evolution of duplicate control regions in the mitochondrial genomes of metazoa: A case study with Australasian Ixodes ticks. Mol Biol Evol. 20:362–370.
   Google Scholar
• Sun H, Zhou K, Song D. 2005. Mitochondrial genome of the Chinese mitten crab Eriocheir japonica sinenesis (Brachyura: Thoracotremata: Grapsoidea) reveals a novel gene order and two target regions of gene rearrangements. Gene. 249:207–217.
   Google Scholar
• Wilson K, Cahill V, Ballment E, Benzie J. 2000. The complete sequence of the mitochondrial genome of the crustacean Penaeus monodon: Are malacostracan crustaceans more closely related to insects than to branchiopods?. Mol Biol Evol. 17:863–874.
   PubMed Web of Science ®Google Scholar
• Yamaguchi MM, Miya MU, Nishida M. 2002. Complete mitochondrial DNA sequence of the Japanese spiny lobster, Panulirus japonicus (Crustacea: Decapoda). Gene. 295:89–96.
   Google Scholar
• Yokobori S, Pääbo S. 1995. Transfer RNA editing in land snail mitochondria. Proc Natl Acad Sci USA. 92:10432–10435.
   PubMed Web of Science ®Google Scholar
• Yokobori S, Suzuki T, Watanabe K. 2001. Genetic code variations in mitochondria: tRNA as a major determinant of genetic code plasticity. J Mol Evol. 53:314–326.
   PubMed Web of Science ®Google Scholar
• Zuker M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31:3406–3415.
   PubMed Web of Science ®Google Scholar