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Mitochondrial DNA
The Journal of DNA Mapping, Sequencing, and Analysis
Volume 21, 2010 - Issue 6
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Research Article

Optimization of primer-specific filter metrics for the assessment of mitochondrial DNA sequence data

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Pages 191-197 | Received 31 Mar 2010, Accepted 29 Sep 2010, Published online: 20 Dec 2010

References

  • Andrews RM, Kubacka I, Chinnery PF, Lightowlers RN, Turnbull DM, Howell N. 1999. Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA. Nat Genet. 23:147.
  • Applied Biosystems. 2003. GeneMapper™ ID software version 3.1 Human Identification Analysis User Guide. Foster City, California, USA: Applied Biosystems.
  • Butler J. 2006. Debunking some urban legends surrounding validation within the forensic DNA community. Profiles DNA. 9:3–6.
  • Engelmore RS, Feigenbaum E. 1993. Expert systems and artificial intelligence, available at http://www.wtec.org/loyola/kb/c1_s1.htm (accessed 15 September 2010).
  • Hunt VD. 1986. Artificial intelligence and expert systems sourcebook. New York: Chapman and Hall.
  • Perlin MW, Coffman D, Crouse C, Konotop F, Ban JD. 2001. Automated STR data analysis: Validation studiesTwelfth International Symposium on Human Identification – 2001, 29 November. Madison, WI: Promega Corporation.
  • Plopper F, Roby R, Planz J, Eisenberg A. 2006. High throughput processing of family reference samples for missing persons programs: The use of robotics in extraction and amplification setup for STR and mtDNA analysisSeventeenth International Symposium on Human Identification – 2006, 9–12 October. Nashville, TN: Promega Corporation.
  • Roby RK. Expert systems help labs process DNA samples. Natl Inst Justice J. 2008a; 260:16–19.
  • Roby RK. 2008b. High throughput mitochondrial DNA analysis: Optimization of sequence chemistry, characterization of local dye terminator sequencing frames, and tools for the development of an expert system. Doctoral Dissertation, University of Granada, Spain.
  • Roby RK, Christen AD. 2007. Validating expert systems: Examples with the FSS-i3TM Expert System Software. Profiles DNA. 10:13–15.
  • Roby RK, Jones JP. 2005. Evaluating expert systems for forensic DNA laboratories, available at http://www3.appliedbiosystems.com/cms/groups/applied_markets_marketing/documents/generaldocuments/cms_042230.pdf (accessed 16 September 2010).
  • Roby RK, Tincher BM. 2010. Expert systems: High throughput analysis of single source samples for forensic DNA databasing, Report. Huntington, WV: US Department of Justice.
  • Roby RK, Capt C, Macurdy KM, Planz JV, Lorente JA, Eisenberg AJ. 2008. New tools for mitochondrial DNA sequencing and analysis at the University of North Texas Center for Human Identification LaboratoryProceedings of the American Academy of Forensic Sciences, 18–22 FebruaryWashington, DC.
  • Roby RK, Gonzalez SD, Phillips NR, Planz JV, Thomas JL, Pantoja Astudillo JA, Ge J, Aguirre Morales E, Eisenberg AJ, Chakraborty R, Bustos P, Budowle B. Autosomal STR allele frequencies and Y-STR and mtDNA haplotypes in Chilean sample populations. Forensic Sci Int Genet Suppl Ser. 2009a; 2:532–533.
  • Roby RK, Thomas JL, Phillips NR, Gonzalez SD, Planz JV, Eisenberg AJHigh-throughput processing of mitochondrial DNA analysis using roboticsProceedings of the American Academy of Forensic SciencesDenver, CO2009b 16–21 February.
  • Roby RK, Phillips NR, Thomas JL, Keppler R, Eisenberg AJ. 2010. Quality assessment and alert messaging software for raw mitochondrial DNA sequence dataProceedings of the American Academy of Forensic Sciences, 22–27 FebruarySeattle, WA.

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