Mitochondrial DNA response to high altitude: A new perspective on high-altitude adaptation

References

• Anderson S, Bankier AT, Barrell BG, de Bruijn MH, Coulson AR, Drouin J, Eperon IC, Nierlich DP, Roe BA, Sanger F, Schreier PH, Smith AJ, Staden R, Young IG. 1981. Sequence and organization of the human mitochondrial genome. Nature. 290:457–465.
   PubMed Web of Science ®Google Scholar
• Andrews RM, Kubacka I, Chinnery PF, Lightowlers RN, Turnbull DM, Howell N. 1999. Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA. Nat Genet. 23:147.
   PubMed Web of Science ®Google Scholar
• Croughs M, van Gompel A, van den Ende J. 2011. Acute mountain sickness in travelers who consulted a pre-travel clinic. J Travel Med. 18:337–343.
   PubMedGoogle Scholar
• Du Y, Guo S, Wang Z, Ci H, Cai Z, Zhang Q, Su J, Liu J. 2010. Demographic history of the Tibetan antelope Pantholops hodgsoni (chiru). J Syst Evol. 48:490–496.
   Google Scholar
• Edris W, Burgett B, Stine OC, Filburn CR. 1994. Detection and quantitation by competitive PCR of an age-associated increase in a 4.8-kb deletion in rat mitochondrial DNA. Mutat Res. 316:69–78.
   PubMedGoogle Scholar
• Gu M, Dong X, Shi L, Lin K, Huang X, Chu J. 2012. Differences in mtDNA whole sequence between Tibetan and Han populations suggesting adaptive selection to high altitude. Gene. 496:37–44.
   PubMed Web of Science ®Google Scholar
• Gu Z, Zhao X, Li N, Wu C. 2007. Complete sequence of the yak (Bos grunniens) mitochondrial genome and its evolutionary relationship with other ruminants. Mol Phylogenet Evol. 42:248–255.
   PubMed Web of Science ®Google Scholar
• Guo S, Savolainen P, Su J, Zhang Q, Qi D, Zhou J, Zhong Y, Zhao X, Liu J. 2006. Origin of mitochondrial DNA diversity of domestic yaks. BMC Evol Biol. 6:73–86.
   PubMed Web of Science ®Google Scholar
• Hassanin A, Ropiquet A, Couloux A, Cruaud C. 2009. Evolution of the mitochondrial genome in mammals living at high altitude: New insights from a study of the tribe Caprini (Bovidae, Antilopinae). J Mol Evol. 68:293–310.
   PubMed Web of Science ®Google Scholar
• Ho SY, Larson G, Edwards CJ, Heupink TH, Lakin KE, Holland PW, Shapiro B. 2008. Correlating Bayesian date estimates with climatic events and domestication using a bovine case study. Biol Lett. 4:370–374.
   PubMed Web of Science ®Google Scholar
• Hoppeler H, Vogt M, Weibel ER, Fluck M. 2003. Response of skeletal muscle mitochondria to hypoxia. Exp Physiol. 88:109–119.
   PubMed Web of Science ®Google Scholar
• Ji F, Sharpley MS, Derbeneva O, Alves LS, Qian P, Wang Y, Chalkia D, Lvova M, Xu J, Yao W, Simon M, Platt J, Xu S, Angelin A, Davila A, Huang T, Wang PH, Chuang LM, Moore LG, Qian G, Wallace DC. 2012. Mitochondrial DNA variant associated with Leber hereditary optic neuropathy and high-altitude Tibetans. Proc Natl Acad Sci U S A. 109:7391–7396.
   PubMed Web of Science ®Google Scholar
• Kayser B, Hoppeler H, Claassen H, Cerretelli P. 1991. Muscle structure and performance capacity of Himalayan Sherpas. J Appl Physiol. 70:1938–1942.
   PubMed Web of Science ®Google Scholar
• Lai SJ, Chen SY, Liu YP, Yao YG. 2007. Mitochondrial DNA sequence diversity and origin of Chinese domestic yak. Anim Genet. 38:77–80.
   PubMed Web of Science ®Google Scholar
• Li FX, Ji FY, Zheng SZ, Yao W, Xiao ZL, Qian GS. 2011. MtDNA haplogroups M7 and B in southwestern Han Chinese at risk for acute mountain sickness. Mitochondrion. 11:553–558.
   PubMed Web of Science ®Google Scholar
• Luo Y, Chen Y, Gao Y. There was no association between the heterogeneity deletion of mitochondrial genome 4977 bp and high altitude pulmonary edema susceptibility [Chinese]. Acta Academiae Medicinae Militaris Tertiae. 2011a; 33:2537–2538.
   Google Scholar
• Luo Y, Chen Y, Liu F, Gao Y. Sequence analysis of Equus kiang mitochondrial genome reveals substitutions in NADH which may reflect evolutionary adaptation to cold and hypoxic conditions. Asia Life Sci. 2012a; 21:1–11.
   Google Scholar
• Luo Y, Chen Y, Liu F, Jiang C, Gao Y. Mitochondrial genome sequence of the Tibetan wild ass (Equus kiang). Mitochondr DNA. 2011b; 22:6–8.
   PubMed Web of Science ®Google Scholar
• Luo Y, Chen Y, Zhou Q, Hou X, Gao Y. A survey of acute mountain sickness and vital signs in subjects ascending to Lhasa via the Qinghai-Tibet train. Sci Res Essays. 2011c; 6:2639–2645.
   Google Scholar
• Luo Y, Gao W, Chen Y, Liu F, Gao Y. Rare mitochondrial DNA polymorphisms are associated with high altitude pulmonary edema (HAPE) susceptibility in Han Chinese. Wilderness Environ Med. 2012b; 23:128–132.
   PubMed Web of Science ®Google Scholar
• Luo Y, Gao W, Gao Y, Tang S, Huang Q, Tan X, Chen J, Huang T. 2008. Mitochondrial genome analysis of Ochotona curzoniae and implication of cytochrome c oxidase in hypoxic adaptation. Mitochondrion. 8:352–357.
   PubMed Web of Science ®Google Scholar
• Luo Y, Gao W, Liu F, Gao Y. The association between the mt5351G, 6680C genotypes and HAPE susceptibility among Hans in the haplogoup M [Chinese]. Chin J Respir Crit Care Med. 2011d; 10:51–54.
   Google Scholar
• Luo Y, Gao W, Liu F, Gao Y. Mitochondrial nt3010G-nt3970C haplotype is implicated in high-altitude adaptation of Tibetans. Mitochondr DNA. 2011e; 22:181–190.
   PubMed Web of Science ®Google Scholar
• Luo Y, Gao Y. 2011. The relationship between the mitochondrial genome variation and altitude hypoxia adaptation [Chinese]. Int J Genet. 34:27–30.
   Google Scholar
• Luo Y, Liao W, Chen Y, Cui J, Liu F, Jiang C, Gao W, Gao Y. Altitude can alter the mtDNA copy number and nDNA integrity in sperm. J Assist Reprod Genet. 2011f; 28:951–956.
   PubMed Web of Science ®Google Scholar
• Luo Y, Liu F, Chen L, Gao Y. Mitochondrial DNA copy number variation during high altitude acclimatization in the leukocyte [Chinese]. Acta Academiae Medicinae Militaris Tertiae. 2011g; 33:359.
   Google Scholar
• Luo Y, Lu G, Chen Y, Liu F, Xu G, Yin J, Gao Y. 2013. Long-term cycles of hypoxia and normoxia increase the contents of liver mitochondrial DNA in rats. Eur J Appl Physiol. 113:223–232.
   PubMed Web of Science ®Google Scholar
• Luo YJ, Gao WX, Li SZ, Huang XW, Chen Y, Liu FY, Huang QY, Gao YQ. Mitochondrial haplogroup D4 confers resistance and haplogroup B is a genetic risk factor for high-altitude pulmonary edema among Han Chinese. Genet Mol Res. 2012c; 11:3658–3667.
   PubMed Web of Science ®Google Scholar
• Mishmar D, Ruiz-PESINI E, Golik P, Macaulay V, Clark AG, Hosseini S, Brandon M, Easley K, Chen E, Brown MD, Sukernik RI, Olckers A, Wallace DC. 2003. Natural selection shaped regional mtDNA variation in humans. Proc Natl Acad Sci USA. 100:171–176.
   PubMed Web of Science ®Google Scholar
• Ning T, Xiao H, Li J, Hua S, Zhang YP. 2011. Adaptive evolution of the mitochondrial ND6 gene in the domestic horse. Genet Mol Res. 9:144–150.
   Google Scholar
• Ruan X, He P, Zhang J, Wan Q, Fang S. 2005. Evolutionary history and current population relationships of the chiru (Pantholops hodgsonii) inferred from mtDNA variation. J Mammal. 86:881–886.
   Google Scholar
• Tang L, Wang L, Cai Z, Zhang T, Ci H, Lin G, Su J, Liu J. 2010. Allopatric divergence and phylogeographic structure of the plateau zokor (Eospalax baileyi), a fossorial rodent endemic to the Qinghai-Tibetan Plateau. J Biogeogr. 37:657–668.
   Google Scholar
• Torroni A, Miller JA, Moore LG, Zamudio S, Zhuang J, Droma T, Wallace DC. 1994. Mitochondrial DNA analysis in Tibet: Implications for the origin of the Tibetan population and its adaptation to high altitude. Am J Phys Anthropol. 93:189–199.
   PubMed Web of Science ®Google Scholar
• Wallace DC. 2005. A mitochondrial paradigm of metabolic and degenerative diseases, aging, and cancer: A dawn for evolutionary medicine. Annu Rev Genet. 39:359–407.
   PubMed Web of Science ®Google Scholar
• Wallace DC, Ruiz-PESINI E, Mishmar D. 2003. mtDNA variation, climatic adaptation, degenerative diseases, and longevity. Cold Spring Harb Symp Quant Biol. 68:479–486.
   PubMedGoogle Scholar
• Wang J, Tang Q, Wang Z, Zhang Y, Wu Q, Peng Z. 2012. The complete mitogenome sequence of a cave loach Triplophysa rosa (Teleostei, Balitoridae, Nemacheilinae). Mitochondr DNA. 23:366–368.
   PubMed Web of Science ®Google Scholar
• Wang Z, Shen X, Liu B, Su J, Yonezawa T, Yu Y, Guo S, Ho SYW, Vil C, Hasegawa M, Liu J. 2010. Phylogeographical analyses of domestic and wild yaks based on mitochondrial DNA: New data and reappraisal. J Biogeogr. 37:2332–2344.
   Web of Science ®Google Scholar
• Wang Z, Yonezawa T, Liu B, Ma T, Shen X, Su J, Guo S, Hasegawa M, Liu J. 2011. Domestication relaxed selective constraints on the yak mitochondrial genome. Mol Biol Evol. 28:1553–1556.
   PubMed Web of Science ®Google Scholar
• Wiener G, Han JL, Long RJ. 2003. The Yak. Bangkok: Regional Office for Asia and the Pacific, Food and Agriculture Organization of the United Nations.
   Google Scholar
• Xu S, Luosang J, Hua S, He J, Ciren A, Wang W, Tong X, Liang Y, Wang J, Zheng X. 2007. High altitude adaptation and phylogenetic analysis of Tibetan horse based on the mitochondrial genome. J Genet Genomics. 34:720–729.
   PubMedGoogle Scholar
• Xu SQ, Yang YZ, Zhou J, Jing GE, Chen YT, Wang J, Yang HM, Yu J, Zheng XG, Ge RL. 2005. A mitochondrial genome sequence of the Tibetan antelope (Pantholops hodgsonii). GPB. 3:5–17.
   Google Scholar
• Yu L, Wang X, Ting N, Zhang Y. 2011. Mitogenomic analysis of Chinese snub-nosed monkeys: Evidence of positive selection in NADH dehydrogenase genes in high-altitude adaptation. Mitochondrion. 11:497–503.
   PubMed Web of Science ®Google Scholar
• Zhao M, Kong QP, Wang HW, Peng MS, Xie XD, Wang WZ, JiayangDuan JG, Cai MC, Zhao SN, Cidanpingcuo Tu YQ, Wu SF, Yao YG, Bandelt HJ, Zhang YP. 2009. Mitochondrial genome evidence reveals successful Late Paleolithic settlement on the Tibetan Plateau. Proc Natl Acad Sci U S A.. 106:21230–21235.
   PubMed Web of Science ®Google Scholar
• Zhao XX, Gao WX, Gao YQ, Suo L, Chen J. 2007. Placental mitochondrial respiratory function of native Tibetan at high altitude. Zhonghua Yi Xue Za Zhi. 87:894–897.
   PubMedGoogle Scholar
• Zhong N, Zhang Y, Zhu HF, Zhou ZN. 2000. Intermittent hypoxia exposure prevents mtDNA deletion and mitochondrial structure damage produced by ischemia/reperfusion injury. Sheng Li Xue Bao. 52:375–380.
   PubMedGoogle Scholar
• Zhou Q. 2011. Standardization of methods for early diagnosis and on-site treatment of high-altitude pulmonary edema. Pulm Med. 2011:190648.
   PubMedGoogle Scholar
• Zhou Q, Luo Y, Li H, Li S, Zhang X, Gao W, Zheng B, Yang D, Liu F, Gao Y. 2010. Epidemiological study of mountain sickness complicated with multiple organ dysfunction syndrome on the Qinghai-Tibetan Plateau: Report of 103 cases. Sci Res Essays. 5:2506–2516.
   Google Scholar