Genetic differentiation of Trachurus japonicus from the Northwestern Pacific based on the mitochondrial DNA control region

References

• Avise JC. 2000. Phylogeography: The history and formation of species. Cambridge: Harvard University Press.
   Google Scholar
• Bektas Y, Belduz AO. 2008. Molecular phylogeny of Turkish Trachurus species (Perciformes: Carangidae) inferred from mitochondrial DNA analyses. J Fish Biol. 73:1228–1248.
   Web of Science ®Google Scholar
• Buonnacorsi VP, McDowell JR, Graves JE. 2001. Reconciling patterns of inter-ocean molecular variance from four classes of molecular markers in blue marlin (Makaira nigricans). Mol Ecol. 10:1179–1196.
   PubMed Web of Science ®Google Scholar
• Cao N, Gao J. 2006. Study on utilization and regional cooperation management of Trachurus japonicus in the East China Sea. Fish Econ Res. 5:25–29.
   Google Scholar
• Comesaña AS, Martínez-Areal MT, Sanjuán A. 2008. Genetic variation in the mitochondrial DNA control region among horse mackerel (Trachurus trachurus) from the Atlantic and Mediterranean areas. Fish Res. 89:122–131.
   Web of Science ®Google Scholar
• Englbrecht CC, Freyhof J, Nolte A, Rassmann K, Schliewen U, Tautz D. 2000. Phylogeography of the bullhead Cottus gobio (Pisces: Teleostei: Cottidae) suggests a pre-Pleistocene origin of the major central European populations. Mol Evol. 9:709–722.
   Google Scholar
• Excoffier L, Smouse PE, Quattro JM. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data. Genetics. 131:479–491.
   PubMed Web of Science ®Google Scholar
• Fu YX. 1997. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics. 147:915–925.
   PubMed Web of Science ®Google Scholar
• Grant W, Bowen B. 1998. Shallow population histories in deep evolutionary lineages of marine fishes: insights from sardines and anchovies and lessons for conservation. J Hered. 89:415–426.
   Web of Science ®Google Scholar
• Godt MJ, Johnson BR, Hamrick JL. 1996. Genetic diversity and population size in four rare southern Appalachian plant species. Conserv Biol. 10:796–805.
   Web of Science ®Google Scholar
• Hewitt G. 2000. The genetic legacy of the Quaternary ice ages. Nature. 405:907–913.
   PubMed Web of Science ®Google Scholar
• Kasai A, Komatsu K, Sassa C, Konishi Y. 2008. Transport and survival processes of eggs and larvae of jack mackerel Trachurus japonicus in the East China Sea. Fish Sci. 74:8–18.
   Google Scholar
• Kijima A, Taniguchi N, Ochiai A. 1988. Genetic divergence and relationship among fifteen species of genera Trachurus, Decapterus, Selar and Selaroides. Jpn J Ichthyol. 35:167–175.
   Google Scholar
• Kitamura A, Takano O, Takata H, Omote H. 2001. Late Pliocene-early Pleistocene paleoceanographic evolution of the Japan Sea. Palaeogeography. 172:81–98.
   Web of Science ®Google Scholar
• Kumar S, Tamura K, Nei M. 2004. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform. 5:150–163.
   PubMed Web of Science ®Google Scholar
• Lee W, Conroy J, Howell W, Kocher T. 1995. Structure and evolution of teleost mitochondrial control regions. J Mol Evol. 41:54–66.
   PubMed Web of Science ®Google Scholar
• Liu J, Gao T, Zhuang Z, Jin X, Yokogawa K, Zhang Y. 2006. Late Pleistocene divergence and subsequent population expansion of two closely related fish species, Japanese anchovy (Engraulis japonicus) and Australian anchovy (Engraulis australis). Mol Phylogenet Evol. 40:712–723.
   PubMed Web of Science ®Google Scholar
• Lunt DH, Whipple LE, Hyman BC. 1998. Mitochondrial DNA variable number of tandem repeats (VNTRs): Utility and problems in molecular ecology. Mol Ecol. 7:1441–1455.
   PubMed Web of Science ®Google Scholar
• McMillan WO, Palumbi SR. 1997. Rapid rate of control region evolution in Pacific butterfly fishes (Chaetodontidae). J Mol Evol. 45:473–484.
   PubMed Web of Science ®Google Scholar
• Niu S, Su Y, Wang J, Zhang L, Zeng H, Zhang M. 2011. Genetic polymorphism of mitochondrial control region and cyt b in Trachurus japonicus from Fujian coastal waters. J Fish Sci Chin. 18:66–74 (in Chinese).
   Google Scholar
• Posada D, Crandall KA. 1998. MODELTEST: Testing the model of DNA substitution. Bioinformatics. 14:817–818.
   PubMed Web of Science ®Google Scholar
• Raymond M, Rousset F. 1995. An exact test for population differentiation. Evolution. 49:1280–1283.
   PubMed Web of Science ®Google Scholar
• Rice WR. 1989. Analyzing tables of statistical tests. Evolution. 43:223–225.
   PubMed Web of Science ®Google Scholar
• Rogers AR, Harpending H. 1992. Population growth makes waves in the distribution of pairwise genetic differences. Mol Biol Evol. 9:552–569.
   PubMed Web of Science ®Google Scholar
• Ryman N. 1991. Conservation genetics considerations in fishery management. J Fish Biol. 39:211–224.
   Web of Science ®Google Scholar
• Sassa C, Konishi Y, Mori K. 2006. Distribution of jack mackerel (Trachurus japonicus) larvae and juveniles in the East China Sea, with special reference to the larval transport by the Kuroshio. Current Fish Oceanogr. 15:508–518.
   Google Scholar
• Sassa C, Tsukamoto Y, Nishiuchi K, Konishi Y. 2008. Spawning ground and larval transport processes of jack mackerel Trachurus japonicus in the shelf-break region of the southern East China Sea. Continent Shelf Res. 28:2574–2583.
   Google Scholar
• Sassa C, Yamamoto K, Tsukamoto Y, Konishi Y, Tokimura M. 2009. Distribution and migration of age-0 jack mackerel (Trachurus japonicus) in the East China and Yellow Seas, based on seasonal bottom trawl surveys. Fish Oceanogr. 18:255–267.
   Google Scholar
• Schneider S, Roessli D, Excoffier L. 2000. ARLEQUIN, version 2.0: A software for population genetic data analysis. Geneva: Genetics and Biometry Laboratory, University of Geneva.
   Google Scholar
• Slatkin M. 1993. Isolation by distance in equilibrium and non-equilibrium populations. Evolution. 47:264–279.
   PubMed Web of Science ®Google Scholar
• Smith PJ, Francis R, McVeagh M. 1991. Loss of genetic diversity due to fishing pressure. Fish Res. 10:309–316.
   Web of Science ®Google Scholar
• Starnes JH. 2004. Effects of management and population size on genetic diversity of Eggert's sunflower (HELIANTHUS EGGERTII; ASTERACEAE), Western Kentucky University, Masters Theses & Specialist Projects.
   Google Scholar
• Tajima F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics. 123:585–595.
   PubMed Web of Science ®Google Scholar
• Ujiié Y, Ujiie H, Taira A, Nakamura T, Oguri K. 2003. Spatial and temporal variability of surface water in the Kuroshio source region, Pacific Ocean, over the past 21,000 years: Evidence from planktonic foraminifera. Mar Micropaleontol. 49:335–364.
   Google Scholar
• Ujiié H, Ujiié Y. 1999. Late Quaternary course changes of the Kuroshio Current in the Ryukyu Arc region, northwestern Pacific Ocean. Mar Micropaleontol. 37:23–40.
   Web of Science ®Google Scholar
• Ward R, Woodmark M, Skibinski D. 1994. A comparison of genetic diversity levels in marine, freshwater and anadromous fishes. J Fish Biol. 44:213–232.
   Web of Science ®Google Scholar
• Whitehead A, Anderson SL, Kuivila KM, Roach JL, May B. 2003. Genetic variation among interconnected populations of Catostomus occidentalis: Implications for distinguishing impacts of contaminants from biogeographical structuring. Mol Evol. 12:2817–2833.
   Google Scholar
• Xie S, Watanabe Y. 2007. Transport-determined early growth and development of jack mackerel Trachurus japonicus juveniles immigrating into Sagami Bay. Jpn Mar Freshwater Res. 58:1048–1055.
   Web of Science ®Google Scholar
• Xu X, Oda M. 1999. Surface-water evolution of the eastern East China Sea during the last 36,000 years. Mar Geol. 156:285–304.
   Web of Science ®Google Scholar
• Yoda M, Ohshimo S, Hiyama Y. 2004. Estimation of the spawning ground of jack mackerel in the East China Sea based on the catch statistics and biometric data. Bull Jpn Soc Fish Oceanogr. 68:20–26.
   Google Scholar
• Zhu Y, Wu H. 1963. Fishes of East China Sea. Beijing: Science Press.
   Google Scholar