Publication Cover
Mitochondrial DNA
The Journal of DNA Mapping, Sequencing, and Analysis
Volume 25, 2014 - Issue 2
129
Views
15
CrossRef citations to date
0
Altmetric
Research Article

Mitochondrial DNA reveals population structuring in Macrodon atricauda (Perciformes: Sciaenidae): a study covering the whole geographic distribution of the species in the southwestern Atlantic

, , , , &
Pages 150-156 | Received 14 Jan 2013, Accepted 31 Mar 2013, Published online: 08 May 2013

References

  • Araújo FG, Azevedo MCC, Araújo silva M, Pessanha ALM, Gomes ID, Cruz-filho AG. (2002). Environmental influences on the demersal fish assemblages in the Sepetiba Bay, Brazil. Estuaries 25:441–50
  • Araújo FG, Guimarães FJDC, Costa MRD. (2006). Environmental influences on distribution of four Sciaenidae species (Actinopterygii, Perciformes) in a tropical bay at Southeastern Brazil. Revista Brasileira de Zoologia 23:497–508
  • Barletta M, Barletta-bergan A, Saint-paul U, Hubold G. (2005). The role of salinity in structuring the fish assemblages in a tropical estuary. J Fish Biol 66:45–72
  • Barletta-bergan A, Barletta M, Saint-Paul U. (2002). Structure and seasonal dynamics of larval fish in the Caeté river estuary in North Brazil. Estuarine, Coastal Shelf Sci 54:193–206
  • Brandini FP, Boltovskoy D, Piola A, Kocmur S, Röttgers R, Abreu PC, Lopes RM. (2000). Multiannual trends in fronts and distribution of nutrients and chlorophyll in the southwestern Atlantic (30–62°S). Deep-Sea Research, Part I. Oceanographic Research Papers 47:1015–33
  • Cardoso LG, Haimovici M. (2011). Age and changes in growth of the king weakfish Macrodon atricauda (Günther, 1880) between 1977 and 2009 in southern Brazil. Fish Res 111:177–87
  • Carvalho-filho A, Santos S, Sampaio I. (2010). Macrodon atricauda (Günther, 1880) (Perciformes: Sciaenidae), a valid species from southwestern Atlantic, with comments on its conservation. Zootaxa 2519:48–58
  • Corander J, Marttinen P. (2006). Bayesian identification of admixture events using multilocus molecular markers. Mol Ecol 15:2833–43
  • Corander J, Waldmann P, Sillanpää MJ. (2003). Bayesian analysis of genetic differentiation between populations. Genetics 163:367–74
  • Cousseau MB, Perrota RG. (1998). Peces Marinos de Argentina: biología, distribución y pesca. Mar del Plata, Argentina, Instituto Nacional de Invesgación y Desarrollo Pesquero (INIDEP)
  • Excoffier L, Lischer HEL. (2010). Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10:564–7
  • Excoffier L, Smouse PE, Quattro JM. (1992). Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data. Genetics 131:479–91
  • Fernández Iriarte PJ, Alonso MP, Sabadin DE, Arauz PA, Iudica CM. (2011). Phylogeography of weakfish Cynoscion guatucupa (Perciformes: Sciaenidae) from the southwestern Atlantic. Scientia Marina 75:701–6
  • Fu Y-X. (1997). Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147:915–25
  • Gomes G, Schneider H, Vallinoto M, Santos S, Orti G, Sampaio I. (2008). Can Lutjanus purpureus (South red snapper) be “legally” considered a red snapper (Lutjanus campechanus)? Genet Mol Biol 31:372–6
  • Goni G, Kamholz S, Garzoli S, Olson D. (1996). Dynamics of the Brazil-Malvinas Confluence based on inverted echo sounders and altimetry. J Geophysical Res 101:16273–89
  • Grant WAS, Bowen BW. (1998). Shallow population histories in deep evolutionary lineages of marine fishes: Insights from sardines and anchovies and lessons for conservation. J Heredity 89:415–26
  • Haimovici M. (1998). Present state and perspectives for the southern Brazil shelf demersal fisheries. Fish Manag Ecol 5:277–89
  • Hall TA. (1999). BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95\98\NT. Nucl Acids Symp Series 41:95–8
  • Juras AA, Yamaguti N. (1985). Food and feeding habits of king weakfish, Macrodon ancylodon (Bloch & Schneider, 1801) caught in the southern coast of Brazil (Lat. 29o to 32o S). Boletim do Instituto Oceanográfico 33:149–57
  • Juras AA, Yamaguti N. (1989). Sexual maturity, spawning and fecundity of King weakfish Macrodon ancylodon, caught off Rio Grande do Sul State (southern coast of Brazil). Boletim do Instituto Oceanográfico 37:51–8
  • Kim JK, Kim YH, Kim M-J, Park JY. (2010). Genetic diversity, relationships and demographic history of the small yellow croaker, Larimichthys polyactis (Pisces: Sciaenidae) from Korea and China inferred from mitochondrial control region sequence data. Animal Cells Syst 14:45–51
  • Larmuseau MHD, van Houdt JKJ, Guelinckx J, Hellemans B, Volckaert FAM. (2009). Distributional and demographic consequences of Pleistocene climate fluctuations for a marine demersal fish in the north-eastern Atlantic. J Biogeograph 36:1138–51
  • Librado P, Rozas J. (2009). DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451–2
  • Lorenzo MI, Astarloa JMD, Norbis W, Cousseau MB. (2011). Long term fish assemblages as units of management in a temperate estuary (Rio de la Plata - SW Atlantic Ocean). Brazil J Oceanogra 59:43
  • Lu CP, Chen CA, Hui CF, Tzeng TD, Yeh SY. (2006). Population genetic structure of the swordfish, Xiphias gladius (Linnaeus, 1758), in the Indian Ocean and West Pacific inferred from the complete DNA sequence of the mitochondrial control region. Zool Stud 45:269–79
  • Lutz VA, Carreto JI. (1991). A new spectrofluorometric method for the determination of chlorophyll-a and degradation products and its application in two frontal areas of the Argentine Sea. Continental Shelf Res 11:433–51
  • Matano RP, Schlax MG, Chelton DB. (1993). Seasonal variability in the southwestern Atlantic. J Geophys Res 98:18027–35
  • Matano RP, Palma ED, Piolam AR. (2010). The influence of the Brazil and Malvinas Currents on the Southwestern Atlantic Shelf circulation. Ocean Sci 6:983–95
  • Menezes NA, Buckup PA, Figueiredo JL, Moura RL. (2003). Catálogo das espécies de peixes marinhos do Brasil. São Paulo: Museu de Zoologia da USP
  • Militelli MI, Macchi GJ. (2004). Spawning and fecundity of king weakfish, Macrodon ancylodon, in the Rio de la Plata estuary, Argentina-Uruguay. J Marine Biol Assoc United Kingdom 84:443–7
  • Muto EY, Soares LSH, Rossi-Wongtschowski CLDB. (2000). Demersal fish assemblages of São Sebastião, southeastern Brazil: Structure and environmental conditioning factors (summer 1994). Brazilian J Oceanography 48:9–27
  • Nei M. (1987). Molecular evolutionary genetics. New York: Columbia University Press
  • Passos AC, Contente RF, Araujo CCV, Daros FALM, Spach HL, Abilhôa V, Fávaro LF. (2012). Fishes of Paranaguá Estuarine Complex, South West Atlantic. Biota Neotropica 12:226–38
  • Piola A, Campos EJD, Moller Jr OO, Charo M, Martinez C. (2000). Subtropical shelf front off eastern South America. J Geophysical Res 105:6565–78
  • Piola AR, Matano RP. (2001). The South AtlanticWestern Boundary Currents Brazil/Falkland (Malvinas) Currents. In: Steele JM, Thorpe SA, Turekian KK (Eds.), Encyclopedia of ocean sciences. London, UK: Academic Press, Vol. 1, pp. 340–9
  • Plavan AA, Passadore C, Gimenez L. (2010). Fish assemblage in a temperate estuary on the Uruguayan coast: Seasonal variation and environmental influence. Brazil J Oceanography 58:299–314
  • Posada D, Crandall KA. (2001). Intraspecific gene genealogies: trees grafting into networks. Trends Ecol Evol 16:37--45
  • Ramírez-Soriano A, Ramos-Onsins SE, Rozas J, Calafell F, Navarro A. (2008). Statistical power analysis of neutrality tests under demographic expansions, contractions and bottlenecks with recombination. Genetics 179:555–67
  • Rocha MLCF, Fernandez WS, Paiva-filho AM. (2010). Spatial and temporal distribution of fish in Palmas Bay, Ubatuba, Brazil. Brazil J Oceanography 58:31–43
  • Rodrigues R, Schneider H, Santos S, Vallinoto M, Sain-Paul U, Sampaio I. (2008). Low levels of genetic diversity depicted from mitochondrial DNA sequences in a heavily exploited marine fish (Cynoscion acoupa, Sciaenidae) from the Northern coast of Brazil. Genet Molecular Biol 31:487–92
  • Sambrook J, Russell DW. (2001). Molecular cloning: A laboratory manual. New York: Cold Spring Harbor laboratory Press
  • Sampaio I, Santos S, Schneider H. (2010). Molecular phylogenetic and population genetic structuring of Macrodon sp, an estuarine dependent Fish of the Western Atlantic Ocean. In: Saint-paul U, Schneider H, editors. Mangrove dynamics and management in North Brazil. Berlin, Germany: Spring Verlag
  • Santos EP, Yamaguti N. (1965). Migração da pescada foguete Macrodon ancylodon. Boletim do Instituto Oceanográfico 14:129–38
  • Santos S, Hrbek T, Farias IP, Schneider H, Sampaio I. (2006). Population genetic structuring of the king weakfish, Macrodon ancylodon (Sciaenidae), in Atlantic coastal waters of South America: Deep genetic divergence without morphological change. Mol Ecol 15:4361–73
  • Santos S, Schneider H, Sampaio I. (2003). Genetic differentiation of Macrodon ancylodon (Sciaenidae, Perciformes) populations in Atlantic coastal waters of South America as revealed by mtDNA analysis. Genet Mol Biol 26:151–61
  • Schmidt TCS, Dias JF. (2012). Pattern of distribution and environmental influences on the Scienidae community of the Southeastern Brazilian coast. Brazil J Oceanography 60:233–43
  • Seyoum S, Tringali MD, Bert TM, Mcelroy D, Stokes R. (2000). An analysis of genetic population structure in red drum, Sciaenops ocellatus, based on mtDNA control region sequences. Fishery Bull 98:127–38
  • Tajima F. (1989). Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585–95
  • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. (2011). MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–9
  • Wang M, Zhang X, Yang T, Han Z, Yanagimoto T, Gao T. (2008). Genetic diversity in the mtDNA control region and population structure in the Sardinella zunasi Bleeker. Afr J Biotechnol 7:4384–92
  • Yamaguti N. (1968). Mortalidade da pescada-foguete, Macrodon ancylodon. Boletim do Instituto Oceanográfico 17:67–70
  • Yamaguti N. (1979). Diferenciação geográfica de Macrodon ancylodon (Bloch & Schneider, 1801) na costa brasileira, entre as latitudes 18o36'S e 32o10'S: etapa I. Brazil J Oceanogr 28:53–118
  • Yamaguti N, Santos EPD. (1966). Crescimento da pescada-foguete (Macrodon ancylodon): Aspecto quantitativo. Boletim do Instituto Oceanográfico 15:75–8

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.