Publication Cover
Mitochondrial DNA
The Journal of DNA Mapping, Sequencing, and Analysis
Volume 25, 2014 - Issue 2
132
Views
4
CrossRef citations to date
0
Altmetric
Research Article

Population divergence and structure of Cirrhinus mrigala from peninsular rivers of India, revealed by mitochondrial cytochrome b gene and truss morphometric analysis

, , , , , , & show all
Pages 157-164 | Received 01 Nov 2012, Accepted 31 Mar 2013, Published online: 24 Jun 2013

References

  • Avise JC, Helfman GS, Saunders NC, Hales LS. (1986). Mitochondrial DNA differentiation in North Atlantic eels: Population genetic consequences of an unusual life history pattern. Proc Natl Acad Sci USA 83:4350–4
  • Begg GA, Waldman JR. (1999). An holistic approach to fish stock identification. Fish Res 43:35–44
  • Bej D, Sahoo L, Das SP, Swain S, Jayasankar P, Das PC, Routray P, et al. (2012a). Complete mitochondrial genome sequence of Catla catla and its phylogenetic consideration. Mol Biol Rep 39:10347–54
  • Bej D, Sahoo L, Das SP, Swain S, Jayasankar P, Das P. (2012b). Complete mitochondrial genome sequence of Cirrhinus mrigala (Hamilton, 1822). Mitochondr DNA 24:91--3
  • Bej D, Sahoo L, Das SP, Swain S, Jayasankar P, Das PC, Routray P, et al. (2012c). Complete mitochondrial genome of Labeo rohita. Mitochondr DNA 23:441--3
  • Bookstein FL, Chernoff B, Elder RL, Humphries JM, Smith Jr GR, Strauss RE. (1985). Morphometrics in evolutionary biology: The geometry of size and shape change, with examples from fishes. Acad Nat Sci Philadelphia Special Publication 15, 277pp
  • Bowen BW, Grant WS. (1997). Phylogeography of the sardines (Sardinops spp.): Assessing biogeographic models and population histories in temperate upwelling zones. Evolution 51:1601–10
  • Charlesworth B. (2009). Effective population size and patterns of molecular evolution and variation. Nat Rev Genet 10:195–205
  • Chondar SL. (1999). Biology of finfish and shellfish, 1st ed. India: SCSC, p 514
  • Chubb ALFAU, Zink Rm FAU, Fitzsimons JM. (1998). Patterns of mtDNA variation in Hawaiian freshwater fishes: The phylogeographic consequences of amphidromy. J Hered 89:8–16
  • Cracraft J. (1976). Covariation patterns in the postcranial skeleton of moas (Aves, Dinornithidae): A factor analytic study. Paleobiology 2:166–73
  • Cadrin SX. (2005). Chapter 7 -- Landmark Morphometrics. In: Cadrin SX, Friedland KD, and Waldman J, editors, Stock identification methodology. Amsterdam: Elsevier Academic Press, p 153--72, 719.pp
  • Cadrin SX, Friedland KD. (1999). The utility of image processing techniques for morphometric analysis and stock identification. Fish Res 43:129–39
  • Chauhan T, Lal KK, Mohindra V, Singh RK, Punia P, Gopalakrishnan A, Sharma PC, Lakra WS. (2007). Evaluating genetic differentiation in wild populations of the Indian major carp, Cirrhinus mrigala (Hamilton –Buchanan, 1882): Evidence from allozyme and microsatellite markers. Aquaculture 269:135–49
  • Daniel RJR. (2001). Endemic fishes of the Western Ghats and the Satpura hypothesis. Curr Sci 81:240–4
  • De La Cruz-Aguero J, Garcia-Rodriguez FJ. (2004). Morphometric stock structure of the Pacific sardine Sardinops sagax (Jenyns, 1842) off Baja California, Mexico. In: Elewa AM, editors. Morphometrics: Applications in biology and paleontology. New York, NY: Springer-Verlag, p 115–24
  • Excoffier L, Laval G, Schneider S. (2005). Arlequin ver. 3.1: An integrated software package for population genetics data analysis. Evol Bioinformatics Online 1:47–50
  • FAO (2004). FAO year book of fisheries statistics. Aquaculture Production, vol. 90/2. Food and Agriculture Organization of United Nations, Rome
  • Ferguson A, Taggart JB, Prodohl PA, McMeel O, Thompson C, Stone C, McGinnity P, Hynes RA. (1995). The application of molecular markers to the study and conservation of fish populations, with special reference to Salmo. J Fish Biol 47:103–26
  • Humphries JM, Bookstein FL, Chernoff B, Smith GR, Elder RL, Poss SG. (1981). Multivariate discrimination by shape in relation to size. J Fish Biol 30:291–308
  • Habib M, Lakra WS, Mohindra V, Khare P, Barman AS, Singh A, Lal KK, et al. (2011). Evaluation of cytochrome b mtDNA sequences in genetic diversity studies of Channa marulius (Channidae: Perciformes). Mol Biol Rep 38:841–6
  • Hall TA. (1999). BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41:95–8
  • Hammer O, Harper DAT, Ryan PD. (2001). PAST: Paleontological statistics software package for education and data analysis. Palaeontol Electron 4:9 . http://palaeo-electronica.org/2001_1/past/issue1_01.htm
  • Kocher TD, Thomas WK, Meyer A, Edwards SV, Paabo S, Villablanca FX, Wilson AC. (1989). Dynamics of mitochondrial DNA evolution in animals: Amplification and sequencing with conserved primers. Proc Natl Acad Sci USA 86:6196–200
  • Kumar S, Tamura K, Nei M. (2004). MEGA4: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Briefings Bioinfor 5:150–63
  • Lervolino F, Kawakami de Resendeb E, Hilsdorfa AWS. (2010). The lack of genetic differentiation of pacu (Piaractus mesopotamicus) populations in the Upper-Paraguay Basin revealed by the mitochondrial DNA D-loop region: Implications for fishery management. Fish Res 101:27–31
  • Librado P, Rozas J. (2009). DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451–2
  • Luhariya RK, Lal KK, Singh RK, Mohindra V, Punia P, Chauhan UK, Gupta A, Lakra WS. (2012). Genetic divergence in wild population of Labeo rohita (Hamilton, 1822) from nine Indian rivers, analyzed through MtDNA cytochrome b region. Mol Biol Rep 39:3659–65
  • Li GY, Wang XZ, Zhao YH, Zhang J, Zhang CG, He SP. (2009). Speciation and Phylogeography of Opsariichthys bidens (Pisces: Cypriniformes: Cyprinidae) in China: Analysis of the Cytochrome b Gene of mtDNA from Diverse Populations. Zooll Stud 48:569–83
  • Morrison DF. (1967). Multivariate statistical methods. New York: McGraw-Hill, p 338
  • Payne AI, Sinha R, Singh HR, Huq S. (2004). A review of Ganges basin: Its fish and fisheries. In: Welcomme R, Petr T, editors. Proceedings of the second International Symposium on the Management of Large Rivers for Fisheries, Sustaining Livelihoods and Biodiversity in the New Millennium. FAO Regional Office for Asia and the Pacific, Bangkok, Thailand. RAP Publication 2004/16, vol. 1
  • Qi D, Guo S, Zhao X, Yang J, Tang W. (2007). Genetic diversity and historical population structure of Schizopygopsis pylzovi (Teleostei: Cyprinidae) in the Qinghai–Tibetan Plateau. Freshwater Biol 52:1090–104
  • Rohlf FJ. (2004). tpsUtil, file utility program. version 1.26. Department of Ecology and Evolution, State University of New York at Stony Brook
  • Rohlf FJ. (2006). tpsDig, Version 1. State University of New York, Stony Brook, NY, Available at: http://life.bio.sunysb.edu/morph
  • Sambrook J, Russell DW. (2001). Molecular cloning: A laboratory manual, 3rd ed. New York: Cold Spring Harbor Laboratory press
  • Shui BN, Han ZQ, Gao TX, Miao ZQ, Yanagimoto T. (2009). Mitochondrial DNA variation in the East China Sea and Yellow Sea populations of Japanese Spanish mackerel & lt;i>Scomberomorus niphonius</i&gt. Fish Sci 75:593–600
  • Slatkin M, Hudson RR. (1991). Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations montgomery. Genetics 129:555–62
  • Strauss RE, Bookstein FL. (1982). The Truss: Body form reconstructions in morphometrics. Syst Biol 31:113–35
  • Swain DP, Riddell BE, Murray CB. (1991). Morphological differences between hatchery and wild populations of coho salmon (Oncorhynchus kisutch): Environmental versus genetic origin. Can J Fish Aquat Sci 48:783–1791
  • Talwar PK, Jhingran AG. (1991). Inland fishes of india and adjacent countries. Rotterdam: A.A. Balkema, p 541
  • Teacher AGF, Griffiths DJ. (2010). HapStar: Automated haplotype network layout and visualization. Mol Ecol Res 11:151--3
  • Thompson JD, Higgins DG, Gibson TJ. (1994). CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl Acid Res 22:4673–80
  • Ward RD, Woodwark M, Skibinski DOF. (1994). A comparison of genetic diversity levels in marine, freshwater and anadromous fish. J Fish Biol 44:213–32
  • Wimberger PH. (1992). Plasticity of fish body shape. The effects of diet, development, family and age in two species of Geophagus (Pisces: Cichlidae). Biol J Linn Soc 45:197–218
  • Zelditch ML, Swiderski DL, Sheets HD, Fink WL. (2004). Geometric morphometrics for biologists: A primer. San Diego: Elsevier Academic Press, pp. 443
  • Zhao L, Zhang J, Liu Z, Funk SM, Wei F, Xu M, Li M. (2008). Complex population genetic and demographic history of the Salangid, Neosalanx taihuensis, based on cytochrome b sequences. BMC Evol Biol 8:201 , doi:10.1186/1471-2148-8-201

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.