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Mitochondrial DNA
The Journal of DNA Mapping, Sequencing, and Analysis
Volume 26, 2015 - Issue 4
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Research Article

Evolution of mitochondrial DNA and its relation to basal metabolic rate

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Pages 566-571 | Received 28 Sep 2013, Accepted 07 Dec 2013, Published online: 17 Jan 2014

References

  • Abascal F, Zardoya R, Posada D. (2005). ProtTest: Selection of best-fit models of protein evolution. Bioinformatics 21:2104–5
  • Arnqvist G, Dowling DK, Eady P, Gay L, Tregenza T, Tuda M, Hosken DJ. (2010). Genetic architecture of metabolic rate: Environment specific epistasis between mitochondrial and nuclear genes in an insect. Evolution 64:3354–63
  • Bennett PM, Harvey PH. (1987). Active and resting metabolism in birds: Allometry, phylogeny and ecology. J Zool 213:327–63
  • Bjornerfeldt S, Webster MT, Vila C. (2006). Relaxation of selective constraint on dog mitochondrial DNA following domestication. Genome Res 16:990–4
  • Boratyński Z, Koteja P. (2009). The association between body mass, metabolic rates and survival of bank voles. Funct Ecol 23:330–9
  • Capellini I, Venditti C, Barton RA. (2010). Phylogeny and metabolic scaling in mammals. Ecology 91:2783–93
  • Castoe TA, Jiang ZJ, Gu W, Wang ZO, Pollock DD. (2008). Adaptive evolution and functional redesign of core metabolic proteins in snakes. PLoS One 3:e2201
  • Clarke A, Rothery P, Isaac NJ. (2010). Scaling of basal metabolic rate with body mass and temperature in mammals. J Anim Ecol 79:610–19
  • Dorus S, Evans PD, Wyckoff GJ, Choi SS, Lahn BT. (2004). Rate of molecular evolution of the seminal protein gene SEMG2 correlates with levels of female promiscuity. Nat Genet 36:1326–9
  • Elson JL, Turnbull DM, Howell N. (2004). Comparative genomics and the evolution of human mitochondrial DNA: Assessing the effects of selection. Am J Hum Genet 74:229–38
  • Felsenstein J. (1985). Phylogenies and the comparative method. Am Nat 125:1–15
  • Fisher DO, Owens IP. (2004). The comparative method in conservation biology. Trends Ecol Evol 19:391–8
  • Galtier N, Nabholz B, Glemin S, Hurst GD. (2009). Mitochondrial DNA as a marker of molecular diversity: A reappraisal. Mol Ecol 18:4541–50
  • Garland T Jr, Harvey PH, Ives AR. (1992). Procedures for the analysis of comparative data using phylogenetically independent contrasts. Syst Biol 41:18–32
  • Guindon S, Gascuel O. (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52:696–704
  • Harvey D, Pagel MD. (1991). The comparative method in evolutionary biology. Oxford, UK: Oxford University Press
  • Hasegawa M, Cao Y, Yang ZH. (1998). Preponderance of slightly deleterious polymorphism in mitochondrial DNA: Non-synonymous/synonymous rate ratio is much higher within species than between species. Mol Biol Evol 15:1499–505
  • Hayes JP, Garland TJ. (1995). The evolution of endothermy: Testing the aerobic capacity model. Evolution 49:836–47
  • Henderson KK, Wagner H, Favret F, Britton SL, Koch LG, Wagner PD, Gonzalez NC. (2002). Determinants of maximal O2 uptake in rats selectively bred for endurance running capacity. J Appl Physiol 93:1265–74
  • Hutter B, Bieg M, Helms V, Paulsen M. (2010). Divergence of imprinted genes during mammalian evolution. BMC Evol Biol 10:116
  • Kleiber M. (1947). Body size and metabolic rate. Physiol Rev 27:511–41
  • Koteja P. (1991). On the relation between basal and field metabolic rates in birds and mammals. Funct Ecol 5:56–64
  • Le Galliard JF, Paquet M, Cisel M, Montes-Poloni L, Franklin C. (2013). Personality and the pace-of-life syndrome: Variation and selection on exploration, metabolism and locomotor performances. Funct Ecol 27:136–44
  • Maddison WP, Maddison DR. (2009). Mesquite: A modular system for evolutionary analysis. Available at: http://mesquiteproject.org (Accessed 3 October 2011)
  • McNab BK. (1997). On the utility of uniformity in the definition of basal rate of metabolism. Physiol Zool 70:718–20
  • McNab BK. (2008). An analysis of the factors that influence the level and scaling of mammalian BMR. Comp Biochem Physiol A Mol Integr Physiol 151:5–28
  • Mishmar D, Ruiz-Pesini E, Golik P, Macaulay V, Clark AG, Hosseini S, Brandon M, et al. (2003). Natural selection shaped regional mtDNA variation in humans. Proc Natl Acad Sci USA 100:171–6
  • Müller DWH, Codron D, Werner J, Fritz J, Hummel J, Griebeler EM, Clauss M. (2012). Dichotomy of eutherian reproduction and metabolism. Oikos 121:102–15
  • Murphy WJ, Pringle TH, Crider TA, Springer MS, Miller W. (2007). Using genomic data to unravel the root of the placental mammal phylogeny. Genome Res 17:413–21
  • Rezende EL, Gomes FR, Malisch JL, Chappell MA, Garland TJ. (2006). Maximal oxygen consumption in relation to subordinate traits in lines of house mice selectively bred for high voluntary wheel running. J Appl Physiol 101:477–85
  • Sadowska ET, Labocha MK, Baliga K, Stanisz A, Wroblewska AK, Jagusiak W, Koteja P. (2005). Genetic correlations between basal and maximum metabolic rates in a wild rodent: Consequences for evolution of endothermy. Evolution 59:672–81
  • Shen YY, Shi P, Sun YB, Zhang YP. (2009). Relaxation of selective constraints on avian mitochondrial DNA following the degeneration of flight ability. Genome Res 19:1760–5
  • Sun C, Kong QP, Zhang YP. (2007). The role of climate in human mitochondrial DNA evolution: A reappraisal. Genomics 89:338–42
  • Sun YB, Shen YY, Irwin DM, Zhang YP. (2011). Evaluating the roles of energetic functional constraints on teleost mitochondrial-encoded protein evolution. Mol Biol Evol 28:39–44
  • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. (2011). MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–9
  • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. (1997). The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–82
  • Wallace DC. (2005). A mitochondrial paradigm of metabolic and degenerative diseases, aging, and cancer: A dawn for evolutionary medicine. Annu Rev Genet 39:359–407
  • Wang Z, Yonezawa T, Liu B, Ma T, Shen X, Su J, Guo S, et al. (2011). Domestication relaxed selective constraints on the yak mitochondrial genome. Mol Biol Evol 28:1553–6
  • Weber K, Wilson JN, Taylor L, Brierley E, Johnson MA, Turnbull DM, Bindoff LA. (1997). A new mtDNA mutation showing accumulation with time and restriction to skeletal muscle. Am J Hum Genet 60:373–80
  • Weibel ER, Bacigalupe LD, Schmitt B, Hoppeler H. (2004). Allometric scaling of maximal metabolic rate in mammals: Muscle aerobic capacity as determinant factor. Respir Physiol Neurobiol 140:115–32
  • White CR, Phillips NF, Seymour RS. (2006). The scaling and temperature dependence of vertebrate metabolism. Biol Lett 2:125–7
  • White CR, Seymour RS. (2003). Mammalian basal metabolic rate is proportional to body mass2/3. Proc Natl Acad Sci USA 100:4046–9
  • White CR, Seymour RS. (2005). Allometric scaling of mammalian metabolism. J Exp Biol 208:1611–19
  • Yang Z. (2007). PAML 4: Phylogenetic analysis by maximum likelihood. Mol Biol Evol 24:1586–91
  • Zhang J, Zhang YP, Rosenberg HF. (2002). Adaptive evolution of a duplicated pancreatic ribonuclease gene in a leaf-eating monkey. Nat Genet 30:411–15
  • Zhao H, Rossiter SJ, Teeling EC, Li C, Cotton JA, Zhang S. (2009). The evolution of color vision in nocturnal mammals. Proc Natl Acad Sci USA 106:8980–5
  • Zhao H, Yang JR, Xu H, Zhang J. (2010). Pseudogenization of the umami taste receptor gene Tas1r1 in the giant panda coincided with its dietary switch to bamboo. Mol Biol Evol 27:2669–73

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