References
- Andrews, S. (2011). FastQC High Throughput sequence QC report v.0.10.1. Cambridge, UK: Babraham Bioinformatics
- Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, et al. (2013). MITOS: Improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol 69:313–19
- Chávez-Comparan JC, Galeana-Lemus GG, Manzo-Vargas I, Salinas-Sánchez JA. (2008). Catálogo de peces de arrecifes rocosos-coralinos de Punta Carrizales, Colima, México. (CONABIO, Ed.) Catálogo de peces de arrecifes rocosos-coralinos de Punta Carrizales, Colima, México. p. 1–118. Available at: http://www.conabio.gob.mx/institucion/proyectos/resultados/DJ020_Catalogo_1ra%20Parte.pdf
- Hogan J, Thiessen R, Heath D. (2010). Variability in connectivity indicated by chaotic genetic patchiness within and among populations of a marine fish. Mar Ecol Prog Ser 417:263–75
- Hogan JD, Thiessen RJ, Sale PF, Heath DD. (2012). Local retention, dispersal and fluctuating connectivity among populations of a coral reef fish. Oecologia 168:61–71
- Iwasaki W, Fukunaga T, Isagozawa R, Yamada K, Maeda Y, Satoh TP, Sado T, et al. (2013). MitoFish and MitoAnnotator: A mitochondrial genome database of fish with an accurate and automatic annotation pipeline. Mol Biol Evol 30:2531–40
- Li J-L, Liu M, Hu X-Y. (2014). Complete mitochondrial genome of the saddleback clownfish Amphiprion polymnus (Pisces: Perciformes, Pomacentridae). Mitochondrial DNA. [Epub ahead of print]. DOI:10.3109/19401736.2014.883613
- Mabuchi K, Miya M, Azuma Y, Nishida M. (2007). Independent evolution of the specialized pharyngeal jaw apparatus in cichlid and labrid fishes. BMC Evol Biol 7:10
- Ramon ML, Nelson Pa, Martini E, Walsh WJ, Bernardi G. (2008). Phylogeography, historical demography, and the role of post-settlement ecology in two Hawaiian damselfish species. Mar Biol 153:1207–17
- Tang KL. (2001). Phylogenetic relationships among Damselfishes (Teleostei: Pomacentridae) as determined by mitochondrial DNA data. COPEIA 2001:591–601
- Tang KL, Hui C, Shao K. (2002). Molecular phylogeny of 48 species of damselfishes (Perciformes: Pomacentridae) using 12S mtDNA sequences. Mol Phylogenet Evol 25:445–54
- Tao Y, Li J-L, Liu M, Hu X-Y. (2014a). Complete mitochondrial genome of the orange clownfish Amphiprion percula (Pisces: Perciformes, Pomacentridae). Mitochondrial DNA. [Epub ahead of print]. DOI: 10.3109/19401736.2014.892099
- Tao Y, Li J-L, Liu M, Hu X-Y. (2014b). Complete mitochondrial genome of the yellowtail clownfish Amphiprion clarkii (Pisces: Perciformes, Pomacentridae). Mitochondrial DNA. [Epub ahead of print]. DOI: 10.3109/19401736.2014.892100
- Thiessen RJ, Heath DD. (2006). Characterization of one trinucleotide and six dinucleotide microsatellite markers in bicolor damselfish, Stegastes partitus, a common coral reef fish. Conserv Genet 8:983–5
- Villegas Sánchez Ca, Pérez España H, Rivera Madrid R, Salas Monreal D, Arias González JE. (2013). Subtle genetic connectivity between Mexican Caribbean and south-western Gulf of Mexico reefs: The case of the bicolor damselfish, Stegastes partitus. Coral Reefs 33:241–51
- Villegas-Sánchez Ca, Rivera-Madrid R, Arias-González JE. (2010). Small-scale genetic connectivity of bicolor damselfish (Stegastes partitus) recruits in Mexican Caribbean reefs. Coral Reefs 29:1023–33
- Williams Da, Purcell J, Hughes CR, Cowen RK. (2003). Polymorphic microsatellite loci for population studies of the bicolor damselfish, Stegastes partitus (Pomacentridae). Mol Ecol Notes 3:547–9
- Wyman SK, Jansen RK, Boore JL. (2004). Automatic annotation of organellar genomes with DOGMA. Bioinformatics (Oxford, England) 20:3252–5