References
- Daniell H, Lee SB, Grevich J, Saski C, Quesada-Vargas T, Guda C, Tomkins J, et al. (2006). Complete chloroplast genome sequences of Solanum bulbocastanum, Solanum lycopersicum and comparative analyses with other Solanaceae genomes. Theor Appl Genet 112:1503–18
- Day A, Goldschmidt-Clermont M. (2011). The chloroplast transformation toolbox: Selectable markers and marker removal. Plant Biotechnol J 9:540–53
- Gargano D, Vezzi A, Scotti N, Gray JC, Valle G, Grillo S, Cardi T. (2005). The complete nucleotide sequence of potato (Solanum tuberosum cv. Desiree) chloroplast DNA. Abstracts 2nd Solanaceae Genome Workshop 107
- Group CPB, Li DZ, Gao LM, Li HT, Wang H, Ge XJ, Liu JQ, et al. (2011). Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants. Proc Natl Acad Sci USA 108:19641–6
- Lin T, Zhu G, Zhang J, Xu X, Yu Q, Zheng Z, Zhang Z, et al. (2014). Genomic analyses provide insights into the history of tomato breeding. Nat Genet 46:1220–6
- Meissner R, Jacobson Y, Melamed S, Levyatuv S, Shalev G, Ashri A, Elkind Y, et al. (1997). A new model system for tomato genetics. Plant J 12:1465–72
- Moore MJ, Soltis PS, Bell CD, Burleigh JG, Soltis DE. (2010). Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots. Proc Natl Acad Sci USA 107:4623–8
- Ravi V, Khurana JP, Tyagi AK, Khurana P. (2008). An update on chloroplast genomes. Plant Syst Evol 271:101–22
- Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. (2013). MEGA6: Molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–9
- Tomatod Genome Consortium. (2012). The tomato genome sequence provides insights into fleshy fruit evolution. Nature 485:635–41
- Vincent H, Wiersema J, Kell SP, Dobbie S, Fielder H, Dobbiea S, Castañeda-Álvarez NP, et al. (2013). A prioritized crop wild relative inventory to help underpin global food security. Biol Conserv 167:265–75
- Wang L, Qi XP, Xiang QP, Heinrichs J, Schneider H, Zhang XC. (2010a). Phylogeny of the paleotropical fern genus Lepisorus (Polypodiaceae, Polypodiopsida) inferred from four chloroplast genome regions. Mol Phylogenet Evol 54:211–25
- Wang L, Wu ZQ, Bystriakova N, Ansell SW, Xiang QP, Heinrichs J, Schneider H, et al. (2011). Phylogeography of the Sino-Himalayan fern Lepisorus clathratus on “the roof of the world”. PLoS One 6:e25896
- Wang L, Wu ZQ, Xiang QP, Heinrichs J, Schneider H, Zhang XC. (2010b). A molecular phylogeny and a revised classification of tribe Lepisoreae (Polypodiaceae) based on an analysis of four plastid DNA regions. Bot J Linn Soc 162:28–38
- Wu ZQ. (2014). The whole chloroplast genome of shrub willows (Salix suchowensis). Mitochondrial DNA [Epub ahead of print]. DOI: 10.3109/19401736.2014.982602
- Wu ZQ, Ge S. (2012). Phylogeny of the BEP clade in grasses revisited: Evidence from whole genome sequences of chloroplast. Mol Phylogenet Evol 62:573–8
- Xiang QP, Wei R, Shao YZ, Yang ZY, Wang XQ, Zhang XC. (2015). Phylogenetic relationships, possible ancient hybridization, and biogeographic history of Abies (Pinaceae) based on data from nuclear, plastid, and mitochondrial genomes. Mol Phylogenet Evol 82:1–14
- Xu X, Pan S, Cheng S, Zhang B, Mu D, Ni P, Zhang G, et al. (2011). Genome sequence and analysis of the tuber crop potato. Nature 475:189–95