Molecular evidence for the predation of Critically Endangered endemic Aphanius transgrediens from the stomach contents of world wide invasive Gambusia affinis

References

• Albaina A, Fox CJ, Taylor N, Hunter E, Maillard M, Taylor MI. (2010). A TaqMan real-time PCR based assay targeting plaice (Pleuronectes platessa L.) DNA to detect predation by the brown shrimp (Crangon crangon L.) and the shore crab (Carcinus maenas L.) – Assay development and validation. J Exp Mar Biol Ecol 391:178–89
   Web of Science ®Google Scholar
• Baerwald MR, Schreier BM, Schumer G, May B. (2012). Detection of threatened Delta Smelt in the gut contents of the invasive Mississippi Silverside in the San Francisco Estuary using TaqMan assays. Trans Am Fish Soc 141:1600–7
   Web of Science ®Google Scholar
• Blankenship LE, Yayanos AA. (2005). Universal primers and PCR of gut contents to study marine invertebrate diets. Mol Ecol 14:891–9
   PubMed Web of Science ®Google Scholar
• Boom N, DeWindt W, Verstraete W, Top EM. (2002). Evaluation of nested PCR-DGGE (denaturing gradient gel electrophoresis) with group-specific 16S rRNA primers for the analysis of bacterial communities from different wastewater treatment plants. FEMS Microbiol Ecol 39:101–12
   PubMed Web of Science ®Google Scholar
• Carreon-Martinez L, Johnson TB, Ludsin SA, Heath DD. (2011). Utilization of stomach content DNA to determine diet diversity in piscivorous fishes. J Fish Biol 78:1170–82
   PubMed Web of Science ®Google Scholar
• Clavero M, García-Berthou E. (2005). Invasive species are a leading cause of animal extinctions. Trends Ecol Evol 20:110
   PubMed Web of Science ®Google Scholar
• Courtenay WR, Meff GK. (1989). Small fishes in strange places: A review of introduced Poeciliids. In: Meffe GK, Snelson FF, editors. Ecology and evolution of livebearing fishes (Poeciliidae). Englewood Cliffs, NJ: Prentice Hall. p 319–31
   Google Scholar
• Darwall W, Smith K, Allen D, Seddon M, McGregor Reid G, Clausnitzer V, Kalkman V. (2008). Freshwater biodiversity – a hidden resource under threat. In: Vie JC, Hilton-Taylor C, Stuart SN, editors. Wildlife in a changing world – An analysis of the 2008 IUCN Red List of Threatened Species. Gland, Switzerland: IUCN. p 43–53
   Google Scholar
• Deagle BE, Jarman SN, Pemberton D, Gales NJ. (2005). Genetic screening for prey in the gut contents from a giant squid (Architeuthis sp.). J Heredity 96:417–23
   PubMed Web of Science ®Google Scholar
• Dejean T, Valentini A, Duparc A, Pellier-Cuit S, Pompanon F, Taberlet P. Miaud C. (2011). Persistence of environmental DNA in freshwater ecosystems. PLoS One 6:e23398
   PubMed Web of Science ®Google Scholar
• Dudley RK, Matter WJ. (2000). Effects of small Green Sunfish (Lepomis cyanellus) on recruitment of Gila Chub (Gila intermedia) in Sabino Creek, Arizona. Southwestern Naturalist 45:24–9
   Web of Science ®Google Scholar
• Dunshea G. (2009). DNA-based diet analysis for any predator. PLoS One 4:e5252
   PubMed Web of Science ®Google Scholar
• Fritts TH, Roda GH. (1998). The role of introduced species in the degradation of island ecosystems: A case history of Guam. Annu Rev Ecol Evol System 29:113–40
   Web of Science ®Google Scholar
• Goldberg CS, Sepulveda A, Ray A, Baumgardt J, Waits LP. (2013). Environmental DNA as a new method for early detection of New Zealand mudsnails (Potamopyrgus antipodarum). Freshwater Sci 32:792–800
   Web of Science ®Google Scholar
• Goodell K, Parker IM, Gilbert GS. (2000). Biological impacts of species invasions: Implications for policymakers. In: National Research Council, editors. Incorporating science, economics, and sociology in developing sanitary and phytosanitary standards in international trade. Washington, DC: National Academy Press. p 87–117
   Google Scholar
• Goodsell JA, Kats LB. (1999). Effect of introduced mosquitofish on pacific tree frogs and the role of alternative prey. Conserv Biol 13:921–4
   Web of Science ®Google Scholar
• Harper GL, King RA, Dodd CS, Harwood JD, Glen DM, Bruford MW, Symondson WOC. (2005). Rapid screening of invertebrate predators for multiple prey DNA targets. Mol Ecol 14:819–27
   PubMed Web of Science ®Google Scholar
• Heath MR. (1992). Field investigations of the early life stages of marine fish. Adv Mar Biol 28:1–174
   Web of Science ®Google Scholar
• Hermoso V, Clavero M. (2011). Threatening processes and conservation management of endemic freshwater fish in the Mediterranean basin: A review. Mar Freshwater Res 62:244–54
   Web of Science ®Google Scholar
• Jarman SN. (2004). AMPLICON: Software for designing PCR primers on aligned DNA sequences. Bioinformatics 20:1644–5
   PubMed Web of Science ®Google Scholar
• Jerde C, Mahon A, Chadderton W, Lodge D. (2011). Sight-unseen detection of rare aquatic species using environmental DNA. Conserv Lett 4:150–7
   Web of Science ®Google Scholar
• Keskin E. (2014). Detection of invasive freshwater fish species using environmental DNA survey. Biochem System Ecol 56:68–74
   Web of Science ®Google Scholar
• Krueger CC, May B. (1991). Ecological and genetic effects of salmonid introductions in North America. Can J Fish Aquatic Sci 48:66–77
   Web of Science ®Google Scholar
• Krueger CC, Perkins DL, Mills EL, Marsden JE. (1995). Predation by Alewives on Lake Trout fry in Lake Ontario: Role of an exotic species in preventing restoration of a native species. J Great Lakes Res 21:458–69
   Web of Science ®Google Scholar
• Lowe S, Browne M, Boudjelas S, De Poorter M. (2000). 100 of the world’s worst invasive alien species: A selection from the global invasive species database. Auckland, New Zealand: Invasive Species Specialist Group, Species Survival Commission, World Conservation Union
   Google Scholar
• Malmqvist B, Rundle S. (2002). Threats to the running water ecosystems of the world. Environ Conserv 29:134–53
   Web of Science ®Google Scholar
• Meffe GK. (1985). Predation and species replacement in American southwestern fishes: A case study. Southwestern Naturalist 30:173–87
   Web of Science ®Google Scholar
• Michelin G, Heckly X, Rigaux B. (2011). Rapport d’etude – ADN Environnemental, Detection de l’Espece Exotique Envahissante Grenouille Taureau. Sologne, France
   Google Scholar
• Mooney HA, Cleland EE. (2001). The evolutionary impact of invasive species. Proc Natl Acad Sci USA 98:5446–51
   PubMed Web of Science ®Google Scholar
• Moyle PB, Light T. (1996). Fish invasions in California: Do abiotic factors determine success? Ecology 77:1666–70
   Web of Science ®Google Scholar
• Myers N, Mittermeier RA, Mittermeier CG, da Fonseca GAB, Kent J. (2000). Biodiversity hotspots for conservation priorities. Nature 403:853–8
   PubMed Web of Science ®Google Scholar
• Nakaya M, Takatsu T, Nakagami M, Joh M, Takahashi T. (2004). Spatial distribution and feeding habits of the shrimp Crangon uritai as a predator on larval and juvenile marbled sole Pleuronectes yokohamae. Fish Res 70:445–55
   Google Scholar
• Power ME. (1992). Habitat heterogeneity and the functional significance of fish in river food webs. Ecology 73:1675–88
   Web of Science ®Google Scholar
• Schoenherr AA. (1981). The role of competition in the replacement of native fishes by introduced species. In: Naiman RJ, Soltz DL, editors. Fishes in North American deserts. New York: John Wiley. p 173–203
   Google Scholar
• Sheppard SK, Harwood JD. (2005). Advances in molecular ecology: Tracking trophic links through predator–prey food-webs. Funct Ecol 19:751–62
   Web of Science ®Google Scholar
• Symondson WOC. (2002). Molecular identification of prey in predator diets. Mol Ecol 11:627–41
   PubMed Web of Science ®Google Scholar
• Taberlet P, Coissac E, Hajibabaei M, Rieseberg LH. (2012). Environmental DNA. Mol Ecol 21:1789–93
   PubMed Web of Science ®Google Scholar
• Taberlet P, Griffin S, Goossens B, Questiau S, Manceau V, Escaravage N, Waits LP, Bouvet J. (1996). Reliable genotyping of samples with very low DNA quantities using PCR. Nucleic Acids Res 24:3189–94
   PubMed Web of Science ®Google Scholar
• Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. (2013). MEGA6: Molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–9
   PubMed Web of Science ®Google Scholar
• Thomsen PF, Kielgast J, Iversen LL, Wiuf C, Rasmussen M, Gilbert MT, Orlando L, Willerslev E. (2012). Monitoring endangered freshwater biodiversity using environmental DNA. Mol Ecol 21:2565–73
   PubMed Web of Science ®Google Scholar
• Valdez-Moreno M, Quintal-Lizama C, Gómez-Lozano R, del Carmen García-Rivas M. (2012). Monitoring an alien invasion: DNA barcoding and the identification of lionfish and their prey on coral reefs of the Mexican Caribbean. PLoS One 7:e36636
   PubMed Web of Science ®Google Scholar
• Wennhage H, Pihl L. (2001). Settlement patterns of newly settled plaice (Pleuronectes platessa L.) in a non-tidal Swedish fjord in relation to larval supply and benthic predators. Mar Biol 139:877–89
   Web of Science ®Google Scholar
• Wilcove DS, Rothstein D, Dubow J, Phillips A, Losos E. (1998). Quantifying threats to imperiled species in the United States. Bioscience 48:607–15
   Web of Science ®Google Scholar
• Wildekamp RH, Valkenburg K. (1994). Notizen über Zahnkarpfen–Lebensräume in Anatolien. Die Aquarien und Terrarien Zeitschrift 47:447–53
   Google Scholar
• Wildekamp RH, Küçük F, Ünlüsayin M, Neer WV. (1999). Species and subspecies of the genus Aphanius Nardo 1897 (Pisces: Cyprinodontiformes) in Turkey. Turk J Zool 23:23–44
   Google Scholar