Preliminary study of genetic diversity and population structure of the Relict Gull Larus relictus (Charadriiformes Laridae) using mitochondrial and nuclear genes

References

• Auezov EM. (1971). Taxonomic evaluation and systematic status of Larus relictus. Moscow, J Acad Sci 50:235–42. (in Russian)
   Google Scholar
• Bei YJ, Chen WC, Sun BH, Li JH, Lai JL, Meng SQ. (2014). Population structure of the endangered Hume's pheasant (Syrmaticus humiae) inferred from a partial sequence of the mitochondrial DNA control region. Biochem Syst Ecol 57:69–77
   Web of Science ®Google Scholar
• BirdLife International. (2014). Larus relictus. Available at: http://www.birdlife.org (Accessed 8 December 2014).
   Google Scholar
• Bonfield JK, Smith KF, Staden R. (1995). A new DNA sequence assembly program. Nucleic Acids Res 23:4992–9
   PubMed Web of Science ®Google Scholar
• Calderón L, Quintana F, Cabanne GS, Lougheed SC, Tubaro PL. (2014). Phylogeography and genetic structure of two Patagonian shag species (Aves: Phalacrocoracidae). Mol Phylogenet Evol 72:42–53
   PubMed Web of Science ®Google Scholar
• Chen JZ, Yauk CL, Hebert C, Hebert PDN. (2001). Genetic variation in mitochondrial DNA of North American Herring Gulls, Larus argentatus. J Great Lakes Res 27:199–209
   Web of Science ®Google Scholar
• de Mendonça Dantas GP, Meyer D, Godinho R, Ferrand N, Morgante JS. (2012). Genetic variability in mitochondrial and nuclear genes of Larus dominicanus (Charadriiformes, Laridae) from the Brazilian coast. Genet Mol Biol 35:874–85
   PubMed Web of Science ®Google Scholar
• DuBay SG, Witt CC. (2014). Differential high-altitude adaptation and restricted gene flow across a mid-elevation hybrid zone in Andean tit-tyrant flycatchers. Mol Ecol 23:3551–65
   PubMed Web of Science ®Google Scholar
• Dynesius M, Jansson R. (2000). Evolutionary consequences of changes in species’ geographical distributions driven by Milankovitch climate oscillations. Proc Natl Acad Sci USA 97:9115–20
   PubMed Web of Science ®Google Scholar
• Excoffier L, Laval G, Schneider S. (2005). Arlequin (version 3.0): An integrated software package for population genetics data analysis. Evol Bioinform Online 1:47–50
   PubMed Web of Science ®Google Scholar
• Fu YX. (1997). Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147:915–25
   PubMed Web of Science ®Google Scholar
• Fuentes VM, Green AJ, Negro JJ, Sorenson MD. (2005). Population structure and loss of genetic diversity in the endangered white-headed duck, Oxyura leucocephala. Conserv Genet 6:999–1015
   Web of Science ®Google Scholar
• Gao LJ, Hou JH, Dong JX, Chen C, Du MT. (2013). New distribution of the Relict Gulls in breeding season, at Aotai lake of Inner Mongolia. Chin J Zool 48:141–2
   Google Scholar
• Guo SS, Zhang GR, Guo XZ, Wei KJ, Yang RB, Wei QW. (2014). Genetic diversity and population structure of Schizopygopsis younghusbandi Regan in the Yarlung Tsangpo River inferred from mitochondrial DNA sequence analysis. Biochem Syst Ecol 57:141–51
   Web of Science ®Google Scholar
• Hackett SJ, Kimball RT, Reddy S, Bowie RC, Braun EL, Braun MJ, Chojnowski JL, et al. (2008). A phylogenomic study of birds reveals their evolutionary history. Science 320:1763–8
   PubMed Web of Science ®Google Scholar
• He FQ, David M, Xing XJ, Ren YQ. (2002). A review on studies of the Relict Gull Larus relictus. Chin J Zool 37:65–70
   Google Scholar
• He FQ, Qiao ZZ. (2004). The crisis of Relict Gull in the Ordos, Inner Mongolia. Newslett Wetl 4:18–19
   Google Scholar
• Hughes AR, Inouye BD, Johnson MTJ, Underwood N, Vellend M. (2008). Ecological consequences of genetic diversity. Ecol Lett 11:609–23
   PubMed Web of Science ®Google Scholar
• IUCN. (2014). IUCN Red List of Threatened Species. Version 2014.3. Available at: www.iucnredlist.org (Accessed 8 December 2014).
   Google Scholar
• Jiang HX, Hou YQ, Qian FW, Chu GZ, Li YX, Wang H, Shan K, Zheng GM. (2008). Population genetic divergence and migration pattern of the Saunders’ s gull Larus saundersi. Acta Zool Sin 54:767–76
   Google Scholar
• Kimball RT, Braun EL, Barker FK, Bowie RCK, Braun MJ, Chojnowski JL, Hackett SJ, et al. (2009). A well-tested set of primers to amplify regions spread across the avian genome. Mol Phylogenet Evol 50:654–60
   PubMed Web of Science ®Google Scholar
• Librado P, Rozas J. (2009). DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451–2
   PubMed Web of Science ®Google Scholar
• Liebers D, Helbig AJ, de Knijff P. (2001). Genetic differentiation and phylogeography of gulls in the Larus cachinnans-fuscus group (Aves: Charadriiformes). Mol Ecol 10:2447–62
   PubMed Web of Science ®Google Scholar
• Liu Y, Lei JY, Zhang Y, Zhang ZW. (2005). The population, distribution and structure of Relict Gull community in Bohai Bay. Proceedings of the Eighth National Congress of China. Ornithological Society and the Sixth Ornithological Symposium of the Mainland and Taiwan in China
   Google Scholar
• Ma M, Chen Y, Bayahen K, Hu BW, Li F, Wu JQ, Gao X, Mei Y. (2010). Seasonal changes in the number of Relict Gull (Larus relictus) at Ebinur Lake, Western China. J Arid Land 2:151–5
   Web of Science ®Google Scholar
• Qi DL, Guo SC, Zhao XQ, Yang J, Tang WJ. (2007). Genetic diversity and historical population structure of Schizopygopsis pylzovi (Teleostei: Cyprinidae) in the Qinghai-Tibetan Plateau. Freshw Biol 52:1090–104
   Web of Science ®Google Scholar
• Rodrigues P, Lopes RJ, Micael J, Resendes R, Ramos JA, Tristão da Cunha R. (2014). Genetic and morphometric diversity of the goldcrest (Regulus regulus) populations in the Azores. Zoology (Jena) 117:383–91
   PubMed Web of Science ®Google Scholar
• Rogers AR, Harpending H. (1992). Population growth makes waves in the distribution of pairwise genetic differences. Mol Biol Evol 9:552–69
   PubMed Web of Science ®Google Scholar
• Slatkin M, Hudson RR. (1991). Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics 129:555–62
   PubMed Web of Science ®Google Scholar
• Tajima F. (1989). Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585–95
   PubMed Web of Science ®Google Scholar
• Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. (2011). Mega 5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–9
   PubMed Web of Science ®Google Scholar
• Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. (1997). The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–82
   PubMed Web of Science ®Google Scholar
• von Haeseler A, Sajantila A, Pääbo S. (1996). The genetics archaeology of the human genome. Nat Genetics 14:135–40
   PubMed Web of Science ®Google Scholar
• Wang WJ, McKay BD, Dai CY, Zhao N, Zhang RY, Qu YH, Song G, et al. (2012). Glacial expansion and diversification of an East Asian montane bird, the green-backed tit (Parus monticolus). J Biogeogr 40:1156–69
   Web of Science ®Google Scholar
• Xiao H, Wang KF, Feng N, Xu ZQ. (2013). New breeding distribution of Relict Gulls in Gouchi wetland, Dingbian, Shaanxi Province. Chin J Zool 48:776–7
   Google Scholar
• Yang C, Wang QX, Huang Y, Xiao H. (2012). Analysis of the complete mitochondrial genome sequence of Larus brunnicephalus (Aves, Laridae). Yin Chuan 34:1434–46
   PubMedGoogle Scholar
• Yin L, Fei JL, Liu CY. (1994). Birds of Hong Kong and South China, eighth ed. Hong Kong: Hong Kong Printing Department
   Google Scholar
• Zhang YS, Bai LJ, Tian L, Wu Y, Chen RB, Sun ZG, Bu H, Liang WZ. (1991). Recent records of the Relict Gull Larus relictus in Ordos, Inner Mongolia, China. Chin J Zool 26:32–3
   Google Scholar