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Mitochondrial DNA Part A
DNA Mapping, Sequencing, and Analysis
Volume 27, 2016 - Issue 6
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Mitogenome Announcement

The complete mitochondrial genome sequence of a cavefish Sinocyclocheilus anshuiensis (Cypriniformes: Cyprinidae)

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Pages 4256-4258 | Received 13 Apr 2015, Accepted 20 Apr 2015, Published online: 05 Nov 2015

References

  • Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, et al. (2012). SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol 19:455–77
  • Gan X, Wu T, Wei M, Yang J. (2013). A new blind barbine species, Sinocyclocheilus anshuiensis sp. nov. (Cypriniformes: Cyprinidae) from Guangxi, China. Zoo Res 34:459–63
  • Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. (2010). New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59:307–21
  • Hao Z, Zhang Q, Qu B. (2014). Complete mitochondrial genome of a cavefish, Sinocyclocheilus anophthalmus (Cypriniformes: Cyprinidae). Mitochondrial DNA. [Epub ahead of print]. doi:10.3109/19401736.2013.873913
  • He S, Liang XF, Chu WY, Chen DX. (2012). Complete mitochondrial genome of the blind cave barbel Sinocyclocheilus furcodorsalis (Cypriniformes: Cyprinidae). Mitochondrial DNA 23:429–31
  • Jeffery WR. (2001). Cavefish as a model system in evolutionary developmental biology. Dev Biol 231:1–12
  • Li R, Yu C, Li Y, Lam TW, Yiu SM, Kristiansen K, Wang J. (2009). SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics 25:1966–7
  • Meng F, Braasch I, Phillips JB, Lin X, Titus T, Zhang C, Postlethwait JH. (2013). Evolution of the eye transcriptome under constant darkness in Sinocyclocheilus cavefish. Mol Biol Evol 30:1527–43
  • Mount DW. (2007). Using the Basic Local Alignment Search Tool (BLAST). CSH Protoc, pdb top17
  • Ronquist F, Huelsenbeck JP. (2003). MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–4
  • Wu X, Wang L, Chen S, Zan R, Xiao H, Zhang YP. (2010). The complete mitochondrial genomes of two species from Sinocyclocheilus (Cypriniformes: Cyprinidae) and a phylogenetic analysis within Cyprininae. Mol Biol Rep 37:2163–71
  • Wyman SK, Jansen RK, Boore JL. (2004). Automatic annotation of organellar genomes with DOGMA. Bioinformatics 20:3252–5
  • Zhao Y, Zhang C. (2009). Endemic fishes of Sinocyclocheilus (Cypriniformes: Cyprinidae) in China – species diversity, cave adaptation, systematics and zoogeography. Beijing: Science Press

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