References
- Benson G. (1999). Tandem repeats finder: A program to analyze DNA sequences. Nucleic Acids Res 27:573
- Eberhard JR, Wright TF, Bermingham E. (2001). Duplication and concerted evolution of the mitochondrial control region in the parrot genus Amazona. Mol Biol Evol 18:1330–42
- Feliner GN, Rosselló JA. (2012). Concerted evolution of multigene families and homoeologous recombination. In: Wendel JF, Greilhuber J, Dolezel J, Leitch IJ, editors. Plant genome diversity. Volume 1. Berlin: Springer. p. 171–93
- Goebel AM, Donnelly JM, Atz ME. (1999). PCR primers and amplification methods for 12S ribosomal DNA, the control region, cytochrome oxidase i, and cytochrome b in bufonids and other frogs, and an overview of PCR primers which have amplified DNA in amphibians successfully. Mol Phylogenet Evol 11:163–99
- Hall TA. (1999). BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–8
- Hillis DM, Dixon MT. (1991). Ribosomal DNA: Molecular evolution and phylogenetic inference. Q Rev Biol 66:411–53
- Kaur T, Ong AHK. (2011). Heteroplasmy, length, and sequence characterization of the mitochondrial control region in Tomistoma schlegelii. Biochem Genet 49:562–75
- Mayol M, Rosselló JA. (2001). Why nuclear ribosomal DNA spacers (ITS) tell different stories in Quercus. Mol Phylogenet Evol 19:167–76
- Morris-Pocock JA, Taylor SA, Birt TP, Friesen VL. (2010). Concerted evolution of duplicated mitochondrial control regions in three related seabird species. BMC Evol Biol 10:14
- Ogoh K, Ohmiya Y. (2007). Concerted evolution of duplicated control regions within an ostracod mitochondrial genome. Mol Biol Evol 24:74–8
- Salzburger W, Ewing GB, Von Haeseler A. (2011). The performance of phylogenetic algorithms in estimating haplotype genealogies with migration. Mol Ecol 20:1952–63
- Sano N, Kurabayashi A, Fujii T, Yonekawa H, Sumida M. (2004). Complete nucleotide sequence and gene rearrangement of the mitochondrial genome of the bell-ring frog, Buergeria buergeri (family Rhacophoridae). Genes Genet Syst 79:151–63
- Sano N, Kurabayashi A, Fujii T, Yonekawa H, Sumida M. (2005). Complete nucleotide sequence of the mitochondrial genome of Schlegel's tree frog Rhacophorus schlegelii (family Rhacophoridae): Duplicated control regions and gene rearrangements. Genes Genet Syst 80:213–24
- Sequeira F, Sodré D, Ferrand N, Bernardi JAR, Sampaio I, Schneider H, Vallinoto M. (2011). Hybridization and massive mtDNA unidirectional introgression between the closely related Neotropical toads Rhinella marina and R. schneideri inferred from mtDNA and nuclear markers. BMC Evol Biol 11:264
- Stoneking M. (2000). Hypervariable sites in the mtDNA control region are mutational hotspots. Am J Hum Genet 67:1029–32
- Sumida M, Kanamori Y, Kaneda H, Kato Y, Nishioka M, Hasegawa M, Yonekawa H. (2001). Complete nucleotide sequence and gene rearrangement of the mitochondrial genome of the Japanese pond frog Rana nigromaculata. Genes Genet Syst 76:311–25
- Tatarenkov A, Avise JC. (2007). Rapid concerted evolution in animal mitochondrial DNA. Proc R Soc B Biol Sci 274:1795–8
- Thompson JD, Higgins DG, Gibson TJ. (1994). CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–80
- Zhou X, Lin Q, Fang W, Chen X. (2014). The complete mitochondrial genomes of sixteen ardeid birds revealing the evolutionary process of the gene rearrangements. BMC Genomics 15:573
- Zink RM, Barrowclough GF. (2008). Mitochondrial DNA under siege in avian phylogeography. Mol Ecol 17:2107–21