DNA barcoding Indian freshwater fishes

References

• Ardura A, Planes S, Garcia-Vazquez E. (2013). Applications of DNA barcoding to fish landings: Authentication and diversity assessment. In: Nagy ZT, Backeljau T, De Meyer M, Jordaens K, editors. DNA barcoding: A practical tool for fundamental and applied biodiversity research. ZooKeys 365:49–65
   PubMed Web of Science ®Google Scholar
• Bensasson D, Zhang DX, Hartl DL, Hewitt GM. (2001). Mitochondrial pseudogenes: Evolution's misplaced witnesses. Trends Ecol Evol (Amst.) 16:314–21
   PubMed Web of Science ®Google Scholar
• Cawthorn D, Steinman HA, Witthuhn RC. (2012). DNA barcoding reveals a high incidence of fish species misrepresentation and substitution on the South African market. Food Res Int 46:30–40
   Web of Science ®Google Scholar
• Costa FO, Antunes PM. (2012). The contribution of the barcode of life initiative to the discovery and monitoring of biodiversity. In: Mendonça A, Cunha A, Chakrabarti R, editors. Natural resources, sustainability and humanity – A comprehensive view. Netherlands: Springer. p 37–68
   Google Scholar
• Ebach MC, Holdredge C. (2005). DNA barcoding is no substitute for taxonomy. Nature 434:697
   PubMed Web of Science ®Google Scholar
• Handy SM, Deeds JR, Ivanova NV, Hebert PD, Hanner RH, Ormos A, et al (2011). A single-laboratory validated method for the generation of DNA barcodes for the identification of fish for regulatory compliance. J AOAC Int 94:201–10
   PubMed Web of Science ®Google Scholar
• Froese R, Pauly D. (2010). Fish Base. World Wide Web electronic publication Available at: www.fishbase.org, version (02/2009)
   Google Scholar
• Hebert PDN, Cywinska A, Ball SL, Ward JR. (2003). Biological identifications through DNA barcodes. Proc Biol Sci 270:313–22
   PubMed Web of Science ®Google Scholar
• Hubert N, Hanner R, Holm E, Mandrak NE, Taylor E. (2008). Identifying Canadian freshwater fishes through DNA barcodes. PLoS One 3:e2490. doi:10.1371/journal.pone.0002490
   PubMed Web of Science ®Google Scholar
• Jo H, Gim J, Jeong K, Kim H, Joo G. (2014). Application of DNA barcoding for identification of freshwater carnivorous fish diets: Is number of prey items dependent on size class for Micropterus salmoides? Ecol Evol 4:219–29
   PubMed Web of Science ®Google Scholar
• Kimura M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–20
   PubMed Web of Science ®Google Scholar
• Kocher TD, Thomas WK, Meyer A, Edwards SV, Paabo S, Villablanca FX, Wilson AC. (1989). Dynamics of mitochondrial DNA evolution in animals: Amplification and sequencing with conserved primers. Proc Natl Acad Sci USA 86:6196–200
   PubMed Web of Science ®Google Scholar
• Kochzius M, Seidel C, Antoniou A, Botla SK, Campo D, Cariani A, Vazquez EG, et al. (2010). Identifying fishes through DNA barcodes and microarrays. PLoS One 5:e12620. doi:10.1371/journal.pone.0012620
   PubMed Web of Science ®Google Scholar
• Kumar S, Tamura K, Nei M. (2004). MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150–63
   PubMed Web of Science ®Google Scholar
• Lakra WS, Goswami M, Gopalakrishnan A. (2009). Molecular identification and phylogenetic relationships of seven Indian Sciaenids (Pisces: Perciformes, Sciaenidae) based on 16S rRNA and cytochrome c oxidase subunit I mitochondrial genes. Mol Biol Rep 36:831–9
   PubMed Web of Science ®Google Scholar
• Lakra WS, Verma MS, Goswami M, Lal KK, Mohindra V, Punia P, Gopalakrishnan A, et al. (2011). DNA barcoding Indian marine fishes. Mol Ecol Resour 11:60–71
   PubMed Web of Science ®Google Scholar
• Landi M, Dimech M, Arculeo M, Biondo G, Martins R, Carneiro M, Carvalho GR, et al. (2014). DNA barcoding for species assignment: The case of Mediterranean marine fishes. PLoS One 9:e106135. doi:10.1371/journal.pone.0106135
   PubMed Web of Science ®Google Scholar
• Meyer CP, Paulay G. (2005). DNA barcoding: Error rates based on comprehensive sampling. PLoS Biol 3:2229–38
   Web of Science ®Google Scholar
• Moritz C, Dowling TE, Brown WM. (1987). Evolution of animal mitochondrial DNA: Relevance for population biology and systematics. Annu Rev Ecol Syst 18:269–92
   Google Scholar
• Pons J, Barraclough TG, Gomez-Zurita J, Cardoso A, Duran DP. (2006). Sequence-based species delimitation for the DNA taxonomy of undescribed insects. Syst Biol 55:595–606
   PubMed Web of Science ®Google Scholar
• Pradhan V, Kamble Y, Ladniya V, Mogul M. (2015). An overview of species identification by DNA barcoding. Int J Curr Microbiol App Sci 4:127–40
   Google Scholar
• Radulovici AE, Archambault P, Dufresne F. (2010). DNA barcodes for marine biodiversity: Moving fast forward? Diversity 2:450–72
   Google Scholar
• Richly E, Leister D. (2004). NUMTs in sequenced eukaryotic genomes. Mol Biol Evol 21:1081–4
   PubMed Web of Science ®Google Scholar
• Saccone C, De Giorgi C, Gissi C, Pesole G, Reyes A. (1999). Evolutionary genomics in Metazoa: The mitochondrial DNA as a model system. Gene 238:195–209
   PubMed Web of Science ®Google Scholar
• Spies IB, Gaichas S, Stevenson DE, Orr JW, Canino MF. (2006). DNA based identification of Alaska skates (Amblyraja, Bathyraja and Raja: Rajidae) using cytochrome c oxidase submit (COI) variation. J Fish Biol 69:283–92
   Web of Science ®Google Scholar
• Teletchea F. (2010). After 7 years and 1000 citations: Comparative assessment of the DNA barcoding and the DNA taxonomy proposals for taxonomists and non-taxonomists. Mitochondrial DNA 21:206–26
   PubMed Web of Science ®Google Scholar
• Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. (1997). The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–82
   PubMed Web of Science ®Google Scholar
• Vartak VR, Narasimmalu R, Annam PK, Singh DP, Lakra WS. (2015). DNA barcoding detected improper labelling and supersession of crab food served by restaurants in India. J Sci Food Agric 95:359–66
   PubMed Web of Science ®Google Scholar
• Valdez-Moreno M, Ivanova NV, Elías-Gutiérrez M, Contreras-Balderas S, Hebert PDN. (2009). Probing diversity in freshwater fishes from Mexico and Guatemala with DNA barcodes. J Fish Biol 74:377–402
   PubMed Web of Science ®Google Scholar
• Ward RD, Hanner R, Hebert PDN. (2009). The campaign to DNA barcode all fishes, FISH_BOL. J Fish Biol 74:329–56
   PubMed Web of Science ®Google Scholar
• Ward RD, Zemlac TC, Innes BH, Last PR, Hebert PDN. (2005). DNA barcoding Australia's fish species. Philos Trans R Soc Lond B Biol Sci 360:1847–57
   PubMed Web of Science ®Google Scholar
• Will KW, Rubinoff D. (2004). Myth of the molecule: DNA barcodes for species cannot replace morphology for identification and classification. Cladistics 20:47–55
   PubMed Web of Science ®Google Scholar
• Zhang J. (2011). Species identification of marine fishes in China with DNA barcoding. Evid Based Complement Alternat Med, doi: 10.1155/2011/978253
   Web of Science ®Google Scholar