Publication Cover
Mitochondrial DNA Part A
DNA Mapping, Sequencing, and Analysis
Volume 27, 2016 - Issue 6
166
Views
8
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

The complete chloroplast genome sequence of Indian mustard (Brassica juncea L.)

, , , &
Pages 4622-4623 | Received 31 Aug 2015, Accepted 26 Sep 2015, Published online: 28 Dec 2015

References

  • Andrews S. (2010). FastQC: A quality control tool for high throughput sequence data. Available at: http://www.bioinformatics.babraham. ac.uk/projects/fastqc (Accessed 14 November 2015)
  • Baux A, Hebesian T, Pellet D. (2008). Effects of minimal temperatures on low-linolenic rapeseed oil fatty-acid composition. Eur J Agron 29:102–7
  • Cui C, Song F, Tan Y, Zhou X, Zhao W, Ma F, Liu Y. (2011). Stable chloroplast transformation of immature scutella and inflorescence in wheat (Tritium aestivum L.). Acta Bioch Bioph Sin 43:284–91
  • Daniell H, Kumar S, Dufourmantel N. (2005). Breakthrough in chloroplast genetic engineering of agronomically important crops. Trends Biotechnol 23:238–45
  • Darling AE, Mau B, Perna NT. (2010). progressiveMauve: Multiple genome alignment with gene gain, loss and rearrangement. PLoS One 5:e11147
  • Greiner S, Wang X, Rauwolf U, Silber MV, Mayer K, Meurer J, Haberer G, Herrmann RG. (2008). The complete nucleotide sequences of the five genetically distinct plastid genomes of Oenothera, subsections Oenothera: I. Sequence evaluation and plastome evolution. Nucleic Acids Res 36:2366–78
  • Hernandez D, François P, Farinelli L, Østerås M, Schrenzel J. (2008). De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computer. Genome Res 18:802–9
  • Joshi NA, Fass JN. (2011). Sickle: A sliding-window, adaptive, quality-based trimming tool for FastQ files (Version 1.33) [Software]. Available at https://github.com/najoshi/sickle (Accessed 14 November 2015)
  • Labana KS, Gupta ML. (1993). Importance and origin. In: Labana KS, Banga SS, Banga SK, editors. Breeding Oilseed Brassicas. Berlin: Spinger-Verlag
  • Luo R, Liu B, Xie Y, Li Z, Huang W, Yuan J, He G, et al (2012). SOAPdenovo2: An empirically improved memory-efficient short-read de novo assembler. GigaScience 1:18
  • Martin M. (2011). Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet J. 17:10–12
  • Mekki BB. (2013). Yield and quality traits of some canola varieties grown in newly reclaimed sandy soils in Egypt. World Appl Sci J. 25:258–63
  • Ravi V, Khurana J, Tyagi A, Khurana P. (2008). An update on chloroplast genomes. Plant Syst E 271:101–22
  • Rubeson LA, Jansen RK. (2005). Chloroplast genomes of plants. In: Henry RJ. editor Plant diversity and evolution: genotypic and phenotypic variation in higher plants. Wallingford: CABI
  • Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. (2013). MEGA6: Molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–9
  • Vangheesdaele G, Fournier N. (1980). Composition chimique de la Brassica juncea utilizes dans la fabrician de la moutar de Dijon. Rev Fr Crops Gras 1:15–22
  • Wu ZQ, Ge S. (2012). Phylogeny of the BEP clade in grasses revisited: Evidence from whole genome sequences of chloroplast. Mol Phylogenet E 62:578–8
  • Wyman SK, Jansen RK, Boore JL. (2004). Automatic annotation of organellar genomes with DOGMA. Bioinformatics 20:3252–5
  • Zerbino DR, Birney E. (2008). Velvet: Algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18:821–9

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.