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Mitochondrial DNA Part A
DNA Mapping, Sequencing, and Analysis
Volume 28, 2017 - Issue 1
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Short Communication

Comparative analysis of chloroplast genomes of the genus Citrus and its close relatives

Xiaogang LiuCollege of Horticulture and Landscape Architecture, Southwest University, Chongqing, China; ;Key Laboratory of Horticulture Science for Southern Mountainous Regions, Ministry of Education, Chongqing, China; ;Post-Doctoral Station of Horticulture, Southwest University, Chongqing, China
,
Hongkun WuCollege of Horticulture and Landscape Architecture, Southwest University, Chongqing, China; ;Key Laboratory of Horticulture Science for Southern Mountainous Regions, Ministry of Education, Chongqing, China;
,
Yan LuoCollege of Horticulture and Landscape Architecture, Southwest University, Chongqing, China; ;Key Laboratory of Horticulture Science for Southern Mountainous Regions, Ministry of Education, Chongqing, China;
,
Wanpeng XiCollege of Horticulture and Landscape Architecture, Southwest University, Chongqing, China; ;Key Laboratory of Horticulture Science for Southern Mountainous Regions, Ministry of Education, Chongqing, China;
&
Zhiqin ZhouCollege of Horticulture and Landscape Architecture, Southwest University, Chongqing, China; ;Key Laboratory of Horticulture Science for Southern Mountainous Regions, Ministry of Education, Chongqing, China; Correspondence[email protected]
Pages 33-36 | Received 08 Aug 2015, Accepted 07 Oct 2015, Published online: 30 Dec 2016

References

  • Barrett HC, Rhodes AM. 1976. A numerical taxonomic study of affinity relationships in cultivated Citrus and its close relatives. Syst Bot. 1:105–136
  • Bausher MG, Singh ND, Lee SB, Jansen RK, Daniell H. 2006. The complete chloroplast genome sequence of Citrus sinensis (L.) Osbeck var ‘Ridge Pineapple’: Organization and phylogenetic relationships to other angiosperms. BMC Plant Biol. 6:21
  • Bayer RJ, Mabberley DJ, Morton C, Miller CH, Sharma IK, Pfeil BE, Rich S, et al. 2009. A molecular phylogeny of the orange subfamily (Rutaceae: Aurantioideae) using nine cpDNA sequences. Amer J Bot. 96:668–685
  • Hynniewta M, Malik SK, Rao SR. 2014. Genetic diversity and phylogenetic analysis of Citrus (L) from north-east India as revealed by meiosis, and molecular analysis of internal transcribed spacer region of rDNA. Meta Gene. 2:237–251
  • Katoh K, Kuma K, Toh H, Miyata T. 2005. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res. 33:511–518
  • Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows–Wheeler transform. Bioinformatics. 25:1754–1760
  • Li X, Xie R, Lu Z, Zhou Z. 2010. The origin of cultivated citrus as inferred from internal transcribed spacer and chloroplast DNA sequence and amplified fragment length polymorphism fingerprints. J Am Soc Horticult Sci. 135:341–350
  • Liu Y, Heying E, Tanumihardjo SA. 2012. History, global distribution, and nutritional importance of citrus fruits. Compr Rev Food Sci Food Saf. 11:530–545
  • Lo WS, Chen LL, Chung WC, Gasparich GE, Kuo CH. 2013. Comparative genome analysis of Spiroplasma melliferum IPMB4A, a honeybee-associated bacterium. BMC Genomics. 14:22
  • Mabberley DJ. 1997. A classification for edible Citrus (Rutaceae). Telopea. 7:167–172
  • Nei M, Kumar S. 2000. Molecular evolution and phylogenetics. US: Oxford University Press
  • Nicolosi E, Deng ZN, Gentile A, La Malfa S, Continella G, Tribulato E. 2000. Citrus phylogeny and genetic origin of important species as investigated by molecular markers. Theor Appl Genet. 100:1155–1166
  • Penjor T, Yamamoto M, Uehara M, Ide M, Matsumoto N, Matsumoto R, Nagano Y. 2013. Phylogenetic relationships of Citrus and its relatives based on matK gene sequences. PLoS ONE. 8:e62574
  • Scora RW. 1975. On the history and origin of Citrus. Bull Torrey Bot Club. 102:369–375
  • Scora RW. 1988 Biochemistry, taxonomy and evolution of modern cultivated Citrus. In Goren R, Mendel K, editors. Proceedings of the 6th international citrus congress. Philadelphia/Rehovot: Balaban Publishers; Weikersheim, Germany: Margraf Scientific Books. p. 277–289
  • Stewart JCN, Via LE. 1993. A rapid CTAB DNA isolation technique useful for RAPD fingerprinting and other PCR applications. Biotechniques. 14:748–750
  • Su HJ, Hogenhout SA, Al-Sadi AM, Kuo CH. 2014. Complete chloroplast genome sequence of Omani Lime (Citrus aurantiifolia) and comparative analysis within the Rosids. PLoS ONE. 9:e113049
  • Swingle WT. 1943. The botany of Citrus and its wild relatives of the orange subfamily. In: Webber HJ, Batchelor LD, editors. The citrus industry. Berkeley: University of California. p. 129–474
  • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 28:2731–2739
  • Tamura K, Nei M. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol. 10:512–526
  • Tanaka T. 1977. Fundamental discussion of Citrus classification. Studia Citrol. 14:1–6
  • Wang RJ, Cheng CL, Chang CC, Wu CL, Su TM, Chaw SM. 2008. Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocots. BMC Evol Biol. 8:36
  • Young HA, Lanzatella CL, Sarath G, Tobias CM. 2011. Chloroplast genome variation in upland and lowland switchgrass. PLoS One. 6:e23980. doi: 10.1371/journal.pone.0023980
  • Zerbino DR, Birney E. 2008. Velvet: Algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821–829

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