Infective endocarditis: does a new 16S rDNA set of primers improve the microbiological diagnosis?

References

• Habib G, Hoen B, Tornos P, Thuny F, Prendergast B, Vilacosta I, et al. Guidelines on the prevention, diagnosis, and treatment of infective endocarditis (new version 2009): the Task Force on the Prevention, Diagnosis, and Treatment of Infective Endocarditis of the European Society of Cardiology (ESC). Endorsed by the European Society of Clinical Microbiology and Infectious Diseases (ESCMID) and the International Society of Chemotherapy (ISC) for Infection and Cancer. Eur Heart J 2009;30:2369–413.
   PubMed Web of Science ®Google Scholar
• Heiro M, Nikoskelainen J, Hartiala JJ, Saraste MK, Kotilainen PM. Diagnosis of infective endocarditis. Sensitivity of the Duke vs von Reyn criteria. Arch Intern Med 1998;158:18–24.
   PubMedGoogle Scholar
• Murdoch DR, Corey GR, Hoen B, Miro JM, Fowler VG Jr, Bayer AS, et al. Clinical presentation, etiology, and outcome of infective endocarditis in the 21st century: the International Collaboration on Endocarditis-Prospective Cohort Study. Arch Intern Med 2009;169:463–73.
   PubMed Web of Science ®Google Scholar
• Berbari EF, Cockerill FR 3rd, Steckelberg JM. Infective endocarditis due to unusual or fastidious microorganisms. Mayo Clin Proc 1997;72:532–42.
   PubMed Web of Science ®Google Scholar
• Fournier PE, Thuny F, Richet H, Lepidi H, Casalta JP, Arzouni JP, et al. Comprehensive diagnostic strategy for blood culture-negative endocarditis: a prospective study of 819 new cases. Clin Infect Dis 2010;51:131–40.
   PubMed Web of Science ®Google Scholar
• Hoen B, Selton-Suty C, Lacassin F, Etienne J, Briancon S, Leport C, et al. Infective endocarditis in patients with negative blood cultures: analysis of 88 cases from a one-year nationwide survey in France. Clin Infect Dis 1995;20:501–6.
   PubMed Web of Science ®Google Scholar
• Houpikian P, Raoult D. Blood culture-negative endocarditis in a reference center: etiologic diagnosis of 348 cases. Medicine (Baltimore) 2005;84:162–73.
   PubMed Web of Science ®Google Scholar
• Werner M, Andersson R, Olaison L, Hogevik H, Swedish Society of Infectious Diseases Quality Assurance Study Group for E. A 10-year survey of blood culture negative endocarditis in Sweden: aminoglycoside therapy is important for survival. Scand J Infect Dis 2008;40:279–85.
   PubMed Web of Science ®Google Scholar
• Breitkopf C, Hammel D, Scheld HH, Peters G, Becker K. Impact of a molecular approach to improve the microbiological diagnosis of infective heart valve endocarditis. Circulation 2005;111:1415–21.
   PubMed Web of Science ®Google Scholar
• Goldenberger D, Kunzli A, Vogt P, Zbinden R, Altwegg M. Molecular diagnosis of bacterial endocarditis by broad-range PCR amplification and direct sequencing. J Clin Microbiol 1997;35:2733–9.
   PubMed Web of Science ®Google Scholar
• Greub G, Lepidi H, Rovery C, Casalta JP, Habib G, Collard F, et al. Diagnosis of infectious endocarditis in patients undergoing valve surgery. Am J Med 2005;118:230–8.
   PubMed Web of Science ®Google Scholar
• Kotilainen P, Heiro M, Jalava J, Rantakokko V, Nikoskelainen J, Nikkari S, et al. Aetiological diagnosis of infective endocarditis by direct amplification of rRNA genes from surgically removed valve tissue. An 11-year experience in a Finnish teaching hospital. Ann Med 2006;38:263–73.
   PubMed Web of Science ®Google Scholar
• Marin M, Munoz P, Sanchez M, del Rosal M, Alcala L, Rodriguez-Creixems M, et al. Molecular diagnosis of infective endocarditis by real-time broad-range polymerase chain reaction (PCR) and sequencing directly from heart valve tissue. Medicine (Baltimore) 2007;86:195–202.
   PubMed Web of Science ®Google Scholar
• Vollmer T, Piper C, Horstkotte D, Korfer R, Kleesiek K, Dreier J. 23S rDNA real-time polymerase chain reaction of heart valves: a decisive tool in the diagnosis of infective endocarditis. Eur Heart J 2010;31:1105–13.
   PubMedGoogle Scholar
• Vondracek M, Sartipy U, Aufwerber E, Julander I, Lindblom D, Westling K. 16S rDNA sequencing of valve tissue improves microbiological diagnosis in surgically treated patients with infective endocarditis. J Infect 2011;62:472–8.
   PubMed Web of Science ®Google Scholar
• Klindworth A, Pruesse E, Schweer T, Peplies J, Quast C, Horn M, et al. Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic Acids Res 2013;41:e1.
   PubMed Web of Science ®Google Scholar
• Gauduchon V, Chalabreysse L, Etienne J, Celard M, Benito Y, Lepidi H, et al. Molecular diagnosis of infective endocarditis by PCR amplification and direct sequencing of DNA from valve tissue. J Clin Microbiol 2003;41:763–6.
   PubMed Web of Science ®Google Scholar
• Hughes MS, Beck LA, Skuce RA. Identification and elimination of DNA sequences in Taq DNA polymerase. J Clin Microbiol 1994;32:2007–8.
   PubMedGoogle Scholar
• Drancourt M, Bollet C, Carlioz A, Martelin R, Gayral JP, Raoult D. 16S ribosomal DNA sequence analysis of a large collection of environmental and clinical unidentifiable bacterial isolates. J Clin Microbiol. 2000;38:3623–30.
   PubMed Web of Science ®Google Scholar
• Harris KA, Yam T, Jalili S, Williams OM, Alshafi K, Gouliouris T, et al. Service evaluation to establish the sensitivity, specificity and additional value of broad-range 16S rDNA PCR for the diagnosis of infective endocarditis from resected endocardial material in patients from eight UK and Ireland hospitals. Eur J Clin Microbiol Infect Dis 2014;33:2061–6.
   PubMed Web of Science ®Google Scholar
• Gould FK, Denning DW, Elliott TS, Foweraker J, Perry JD, Prendergast BD, et al. Guidelines for the diagnosis and antibiotic treatment of endocarditis in adults: a report of the Working Party of the British Society for Antimicrobial Chemotherapy. J Antimicrob Chemother 2012;67:269–89.
   PubMed Web of Science ®Google Scholar
• Millar B, Moore J, Mallon P, Xu J, Crowe M, McClurg R, et al. Molecular diagnosis of infective endocarditis–a new Duke’s criterion. Scand J Infect Dis 2001;33:673–80.
   PubMedGoogle Scholar