Publication Cover
Transportation Letters
The International Journal of Transportation Research
Volume 1, 2009 - Issue 3
104
Views
19
CrossRef citations to date
0
Altmetric
Original

Application of sequence alignment methods in clustering and analysis of routine weekly activity schedules

Pages 197-211 | Published online: 07 Sep 2013

REFERENCES

  • Abbott, A. (1995). “Sequence analysis: new methods for old ideas.” Annual Review of Sociology, 21, 93–113.
  • Arentze, T.A., and H.J.P. Timmermans. (2004). “A learning- based transportation oriented simulation.” Transportation Research Part B: Methodological, 38, 613–633.
  • Bergman, B., C.H. Joh, and H.J.P. Timmermans. (2002). “A typology of tourist vacation behavior using a sequence alignment method.” Annals of Tourism Research, 29, 320–337.
  • Doherty, S., E.J. Miller, K. Axhausen, and T. Garling. (2002). “A conceptual model of the weekly household activity/ travel scheduling process.” In Travel Behavior: Patterns, Implications and Modelling, (E. Stern, I. Salomon and P. Bovy, eds.). Elgar Publishing Ltd., Cheltenham, U.K., pp. 148–165.
  • Huff, J.O. and S. Hanson. (1986). “Repetition and variability in urban travel,” Geographical Analysis, 18, 97–114.
  • Joh. C. H., T. Arentze, F. Hofman, and H. Timmermans. (2002). “Activity pattern similarity: a multidimensional sequence alignment method.” Transportation Research Part B, 36, 385–403.
  • Joh, C.H., T.A. Arentze, and H.J.P. Timmermans. (2001a). “Pattern recognition in complex activity-travel patterns: A comparison of Euclidean distance, signal process�ing theoretical, and multidimensional sequence align�ment methods.” In Transportation Research Record: Journal of the Transportation Research Board, No 1752, Transportation Research Board of the National Academies, Washington D.C.,16–22.
  • Joh, C.H., T.A. Arentze and H.J.P. Timmermans. (2001b). “A position-sensitive sequence alignment method illus�trated for space-time activity-diary data.” Environment and Planning A, 33, 313–339.
  • Joh, C.H., J.W. Polak, and T. Ruiz. (2005). “Characterizing global activity schedule adjustment behavior by using a sequence alignment method.” In Transportation Research Record: Journal of the Transportation Research Board, No 1926, Transportation Research Board of the National Academies, Washington D.C., 26–32.
  • Jones, P. and M. Clarke. (1988). “The significance and mea�surement ofvariability in travel behavior.” Transportation, 15, 65–87.
  • Levenshtein, V.I. (1965), “Binary codes capable of correcting deletions, insertions, and reversals”, Soviet Physics Dokl. 10, pp. 707–710.
  • Levine, J.H. (2000). “But what have you done for us lately? Commentary on Abbott and Tsay.” Social Methods & Research, 29, 34–40.
  • Miller, E.J., and M.J. Roorda. (2003). “Prototype model of household activity-travel scheduling.” In Transportation Research Record: Journal of the Transportation Research Board, No 1831. Transportation Research Board of the National Academies, Washington D.C., 114–121.
  • Needleman, S. B. and C.D. Wunsch. (1970). “A general method applicable to the search for similarities in the amino acid sequence of two proteins.” Journal of Molecular Biology, 48, 443–453.
  • Pas, E.I. (1983). “A flexible and integrated methodology for analytical classification of daily travel-activity behavior.” Transportation Science, 17, 405–429.
  • Roorda, M.J., M, Lee-Gosselin, S.T. Doherty, E.J. Miller, and P. Rondier. (2005). “Travel/activity panel surveys in the Toronto and Quebec City Regions: comparison of methods and preliminary results.” CD Proceedings of PROCESSUS Second International Colloquium on the Behavioral Foundations of Integrated Land-use and Transportation Models: Frameworks, Models and Applications. Toronto.
  • Roorda, M.J., E.J. Miller, and S. Saneinejad. (2007). “Analysis of routine weekly activity/travel patterns.” CD Proceedings 11th World Conference on Transportation Research, Berkeley, CA.
  • Saitou, N., Nei, M. (1987). “The neighbor-joining method: a new method for reconstructing phylogenetic trees”. Molecular Biology and Evolution 4 (4): 406–425
  • Schlich, R. (2001). “Analysing intrapersonal variability of travel behavior using the sequence alignment method.” Vortrag European Transport Conference, Cambridge.
  • Schlich, R. (2003). “Homogenous groups of travellers.” Paper presented at the 10th International Conference on Travel Research, Lucerne.
  • Waterman, M., (1995). Introduction to Computational Biology. Chapman and Hall, London
  • Wilson, C. (1998). “Analysis of travel behavior using sequence alignment methods.” In Transportation Research Record: Journal of the Transportation Research Board, No 1645, Transportation Research Board of the National Academies, Washington D.C., 52–59.
  • Wilson, C. (1999). “Activity pattern of Canadian women: an application of ClustalG sequence alignment software.” Paper presented at International Association for Time- Use Research Annual Meeting.
  • Wilson, C. (2006). “Reliability of sequence alignment analy�sis of social processes: Monte Carlo tests of ClustalG software.” Environment and Planning A, 37, 187–204.
  • Wilson, C. (2007). “Activity pattern in space time: calculat�ing representative hagerstrand trajectories.” Paper pre�sented at the 86th Annual Meeting of the Transportation Research Board, Washington, D.C.
  • Wilson, C., A. Harvey, and J. Thomson. (1999). “ClustalG: software of analysis of activities and sequential events.” Paper presented at the Workshop in Longitudinal Research in Social Sciences: A Canadian Focus, London, Canada.
  • Wilson, C., A. Harvey, and J. Thompson. (2005). “ClustalG: software for analysis of activities and sequential events.” Workshop on Sequence Alignment Methods. Research Development Initiatives Program, Social Science and Humanities Research Council of Canada, Halifax.
  • Wu, L.L. (2000). “Some comments on sequence analysis and optimal matching methods in sociology: review and prospect.” Social Methods & Research, 29, 41–64.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.