Detection and characterisation of novel bocavirus (genus Bocaparvovirus) and gastroenteritis viruses from asymptomatic pigs in Ireland

References

• Kahn LH. Confronting zoonoses, linking human and veterinary medicine. Emerg Infect Dis. 2006; 12: 556–61.
   Google Scholar
• Pulliam JRC. Viral host jumps: moving toward a predictive framework. EcoHealth. 2008; 5: 80–91.
   Google Scholar
• Allander T, Tammi MT, Eriksson M, Bjerkner A, Tiveljung-Lindell A, Andersson B. Cloning of a human parvovirus by molecular screening of respiratory tract samples. Proc Natl Acad Sci USA. 2005; 102: 12891–6.
   Google Scholar
• Manteufel J, Truyen U. Animal bocaviruses: a brief review. Intervirology. 2008; 51: 328–34.
   Google Scholar
• Kapoor A, Simmonds P, Slikas E, Li L, Bodhidatta L, Sethabutr O, etal. Human Bocaviruses are highly diverse, dispersed, recombination prone, and prevalent in enteric infections. J Infect Dis. 2010; 11: 1633–43.
   Web of Science ®Google Scholar
• Kapoor A, Slikas E, Simmonds P, Chieochansin T, Naeem A, Shaukat S, etal. A newly identified Bocavirus species in human stool. J Infect Dis. 2009; 15: 196–200.
   Web of Science ®Google Scholar
• Sun B, Cai Y, Li Y, Li J, Liu K, Li Y, etal. The nonstructural protein NP1 of human bocavirus 1 induces cell cycle arrest and apoptosis in Hela cells. Virology. 2013; 440: 75–83.
   Google Scholar
• Zhang Z, Zheng Z, Luo H, Meng J, Li H, Li Q, etal. Human bocavirus NP1 inhibits IFN-β production by blocking association of IFN regulatory factor 3 with IFNB promoter. J Immunol Baltim Md 1950. 2012; 189: 1144–53.
   Google Scholar
• Blomström A-L, Belák S, Fossum C, McKillen J, Allan G, Wallgren P, etal. Detection of a novel porcine boca-like virus in the background of porcine circovirus type 2 induced postweaning multisystemic wasting syndrome. Virus Res. 2009; 146: 125–9.
   PubMed Web of Science ®Google Scholar
• Yang W, Yu J, Li J, Cheng W, Huang C, Duan Z. Genome characterization of a novel porcine bocavirus. Arch Virol. 2012; 157: 2125–32.
   Google Scholar
• King AMQ, Adams MJ, Lefkowitz EJ, Carstens EB. Virus taxonomy: classification and nomenclature of viruses: ninth report of the International Committee on Taxonomy of Viruses. 2012; 1463. Elsevier, San Diego.
   Google Scholar
• Xiao C-T, Halbur PG, Opriessnig T. Molecular evolutionary genetic analysis of emerging parvoviruses identified in pigs. Infect Genet Evol. 2013; 16: 369–76.
   Google Scholar
• Cotmore SF, McKenna MA, Chiorini JA, Gatherer D, Mukha DV, Pintel DJ, etal. Rationalization and extension of the taxonomy of the family Parvoviridae. International Committee on Taxonomy of Viruses; 2013. Available from: http://ictvonline.org/proposals/2013.001a-aaaV.A.v4.Parvoviridae.pdf [cited 2 February 2014]..
   Google Scholar
• McMenamy MJ, McKillen J, McNair I, Duffy C, Blomström A-L, Charreyre C, etal. Detection of a porcine boca-like virus in combination with porcine circovirus type 2 genotypes and torque teno sus virus in pigs from postweaning multisystemic wasting syndrome (PMWS)-affected and non-PMWS-affected farms in archival samples from Great Britain. Vet Microbiol. 2013; 164: 293–8.
   Google Scholar
• Meng XJ. Emerging and re-emerging swine viruses. Transbound Emerg Dis. 2012 59 85–102.
   Google Scholar
• Ndze VN, Cadar D, Cságola A, Kisfali P, Kovács E, Farkas S, etal. Detection of novel porcine bocaviruses in fecal samples of asymptomatic pigs in Cameroon. Infect Genet Evol. 2013; 17: 277–82.
   Google Scholar
• Blomström A-L, Ståhl K, Okurut AR, Masembe C, Berg M. Genetic characterisation of a porcine bocavirus detected in domestic pigs in Uganda. Virus Genes. 2013; 47: 370–3.
   Web of Science ®Google Scholar
• Zhai S, Yue C, Wei Z, Long J, Ran D, Lin T, etal. High prevalence of a novel porcine bocavirus in weanling piglets with respiratory tract symptoms in China. Arch Virol. 2010; 155: 1313–17.
   Google Scholar
• Cságola A, Lo˝rincz M, Cadar D, Tombácz K, Biksi I, Tuboly T. Detection, prevalence and analysis of emerging porcine parvovirus infections. Arch Virol. 2012; 157: 1003–10.
   Web of Science ®Google Scholar
• Choi M-G, Park S-J, Nguyen V-G, Chung H-C, Kim A-R, Park B-K. Molecular detection and genetic analysis of porcine bocavirus in Korean domestic swine herds. Arch Virol. 2014; 159: 1487–92.
   Google Scholar
• Lau SKP, Woo PCY, Yip CCY, Li KSM, Fu CTY, Huang Y, etal. Co-existence of multiple strains of two novel porcine bocaviruses in the same pig, a previously undescribed phenomenon in members of the family Parvoviridae, and evidence for inter- and intra-host genetic diversity and recombination. J Gen Virol. 2011; 92: 2047–59.
   Google Scholar
• Schildgen O, Muller A, Allander T, Mackay IM, Volz S, Kupfer B, etal. Human bocavirus: passenger or pathogen in acute respiratory tract infections?. Clin Microbiol Rev. 2008; 21: 291–304.
   Google Scholar
• Schildgen O. Human bocavirus: lessons learned to date. Pathogens. 2013; 2: 1–12.
   Google Scholar
• Zhang Q, Hu R, Tang X, Wu C, He Q, Zhao Z, etal. Occurrence and investigation of enteric viral infections in pigs with diarrhea in China. Arch Virol. 2013; 158: 1631–6.
   Google Scholar
• Cheng W, Li J, Huang C, Yao D, Liu N, Cui S, etal. Identification and nearly full-length genome characterization of Novel Porcine Bocaviruses. PLoS One. 2010; 5: e13583.
   Google Scholar
• Li B, Ma J, Xiao S, Fang L, Zeng S, Wen L, etal. Complete genome sequence of a novel species of porcine bocavirus, PBoV5. J Virol. 2012; 86: 1286–7.
   Google Scholar
• Wang E, Liu W, Yang B, Liu J, Ma X, Lan X. Complete sequence and phylogenetic analysis of a porcine bocavirus strain swBoV CH437. Virus Genes. 2014; 48: 387–90.
   Google Scholar
• McKillen J, McNeilly F, Duffy C, McMenamy M, McNair I, Hjertner B, etal. Isolation in cell cultures and initial characterisation of two novel bocavirus species from swine in Northern Ireland. Vet Microbiol. 2011; 152: 39–45.
   Google Scholar
• McNair I, McNeilly F, Duffy C, McKillen J, McMenamy M, Welsh M, etal. Production, characterisation and applications of monoclonal antibodies to two novel porcine bocaviruses from swine in Northern Ireland. Arch Virol. 2011; 156: 2157–62.
   Google Scholar
• Gouvea V, Glass RI, Woods P, Taniguchi K, Clark HF, Forrester B, etal. Polymerase chain reaction amplification and typing of rotavirus nucleic acid from stool specimens. J Clin Microbiol. 1990; 28: 276–82. [PubMed Abstract] [PubMed CentralFull Text].
   Google Scholar
• Will LA, Paul PS, Proescholdt TA, Aktar SN, Flaming KP, Janke BH, etal. Evaluation of rotavirus infection and diarrhea in Iowa commercial pigs based on an epidemiologic study of a population represented by diagnostic laboratory cases. J Vet Diagn Invest. 1994; 6: 416–22.
   Google Scholar
• Martella V, Bányai K, Matthijnssens J, Buonavoglia C, Ciarlet M. Zoonotic aspects of rotaviruses. Vet Microbiol. 2010; 140: 246–55.
   Google Scholar
• Matthijnssens J, Ciarlet M, Heiman E, Arijs I, Delbeke T, McDonald SM, etal. Full genome-based classification of rotaviruses reveals a common origin between human wa-like and porcine rotavirus strains and human DS-1-like and bovine rotavirus strains. J Virol. 2008; 82: 3204–19.
   Google Scholar
• Shan T, Lan D, Li L, Wang C, Cui L, Zhang W, etal. Genomic characterization and high prevalence of bocaviruses in swine. PloS One. 2011; 6: e17292.
   Google Scholar
• Maluquer de Motes C, Clemente-Casares P, Hundesa A, Martin M, Girones R. Detection of bovine and porcine adenoviruses for tracing the source of fecal contamination. Appl Environ Microbiol. 2004; 70: 1448–54.
   Google Scholar
• Carman S, Cai HY, DeLay J, Youssef SA, McEwen BJ, Gagnon CA, etal. The emergence of a new strain of porcine circovirus-2 in Ontario and Quebec swine and its association with severe porcine circovirus associated disease – 2004–2006. Can J Vet Res Rev Can Rech Vét. 2008; 72: 259–68.
   Web of Science ®Google Scholar
• Gentsch JR, Glass RI, Woods P, Gouvea V, Gorziglia M, Flores J, etal. Identification of group A rotavirus gene 4 types by polymerase chain reaction. J Clin Microbiol. 1992; 30: 1365–73. [PubMed Abstract] [PubMed CentralFull Text].
   Google Scholar
• Hall TA. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser. 1999; 41: 95–8.
   Google Scholar
• Helaers R, Milinkovitch MC. MetaPIGA v2.0: maximum likelihood large phylogeny estimation using the metapopulation genetic algorithm and other stochastic heuristics. BMC Bioinformatics. 2010; 11: 379.
   Google Scholar
• Capella-Gutierrez S, Silla-Martinez JM, Gabaldon T. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics. 2009; 25: 1972–3.
   Google Scholar
• Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol. 2013; 30: 2725–9.
   Google Scholar
• Schildgen O. Human bocavirus: increasing evidence for virulence. Pediatr Pulmonol. 2010; 45: 118–19.
   Google Scholar
• Malecki M, Schildgen V, Schildgen O. Human bocavirus: still more questions than answers. Future Virol. 2011; 6: 1107–14.
   Web of Science ®Google Scholar
• Duffy S, Shackelton LA, Holmes EC. Rates of evolutionary change in viruses: patterns and determinants. Nat Rev Genet. 2008; 9: 267–76.
   Google Scholar
• Shackelton LA, Parrish CR, Truyen U, Holmes EC. High rate of viral evolution associated with the emergence of carnivore parvovirus. Proc Natl Acad Sci USA. 2005; 102: 379–84.
   Google Scholar
• Saha D, Lefebvre DJ, Ducatelle R, Doorsselaere JV, Nauwynck HJ. Outcome of experimental porcine circovirus type 1 infections in mid-gestational porcine foetuses. BMC Vet Res. 2011; 7: 64.
   Google Scholar
• Collins PJ, Martella V, Sleator RD, Fanning S, O'Shea H. Detection and characterisation of group A rotavirus in asymptomatic piglets in southern Ireland. Arch Virol. 2010; 155: 1247–59.
   Google Scholar
• AFBI, DAFM. All-island Animal Disease Surveillance Report 2012. 2012. Available from: http://www.afbini.gov.uk/all-island_animal__disease_surveillance_report_2012.pdf [cited 8 July 2013]..
   Google Scholar
• Collins PJ, Cullinane A, Martella V, O'Shea H. Molecular characterization of equine rotavirus in Ireland. J Clin Microbiol. 2008; 46: 3346–54. 54.
   Google Scholar
• Zeng S, Wang D, Fang L, Ma J, Song T, Zhang R, etal. Complete coding sequences and phylogenetic analysis of porcine bocavirus. J Gen Virol. 2011; 92: 784–8.
   Google Scholar