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Journal of Extracellular Vesicles Volume 2, 2013 - Issue 1
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Research Articles

EVpedia: an integrated database of high-throughput data for systemic analyses of extracellular vesicles

Dae-Kyum KimDepartment of Life ScienceDivision of Molecular and Life Sciences, Pohang University of Science and Technology, Pohang, Republic of Korea
,
Byeongsoo KangSchool of Interdisciplinary Bioscience and BioengineeringPohang University of Science and Technology, Pohang, Republic of Korea
,
Oh Youn KimDepartment of Life ScienceDivision of Molecular and Life Sciences, Pohang University of Science and Technology, Pohang, Republic of Korea
,
Dong-sic ChoiDepartment of Life ScienceDivision of Molecular and Life Sciences, Pohang University of Science and Technology, Pohang, Republic of Korea
,
Jaewook LeeDepartment of Life ScienceDivision of Molecular and Life Sciences, Pohang University of Science and Technology, Pohang, Republic of Korea
,
Sae Rom KimDepartment of Life ScienceDivision of Molecular and Life Sciences, Pohang University of Science and Technology, Pohang, Republic of Korea
,
Gyeongyun GoDepartment of Life ScienceDivision of Molecular and Life Sciences, Pohang University of Science and Technology, Pohang, Republic of Korea
,
Yae Jin YoonSchool of Interdisciplinary Bioscience and BioengineeringPohang University of Science and Technology, Pohang, Republic of Korea
,
Ji Hyun KimDepartment of Life ScienceDivision of Molecular and Life Sciences, Pohang University of Science and Technology, Pohang, Republic of Korea
,
Su Chul JangDepartment of Life ScienceDivision of Molecular and Life Sciences, Pohang University of Science and Technology, Pohang, Republic of Korea
,
Kyong-Su ParkDepartment of Life ScienceDivision of Molecular and Life Sciences, Pohang University of Science and Technology, Pohang, Republic of Korea
,
Eun-Jeong ChoiDepartment of Life ScienceDivision of Molecular and Life Sciences, Pohang University of Science and Technology, Pohang, Republic of Korea
,
Kwang Pyo KimDepartment of Molecular BiotechnologyWCU Program, Konkuk University, Seoul, Republic of Korea
,
Dominic M. DesiderioDepartment of NeurologyThe University of Tennessee Health Science Center, Memphis, USA;Department of Molecular ScienceThe University of Tennessee Health Science Center, Memphis, USA;The Charles B. Stout Neuroscience Mass Spectrometry LaboratoryThe University of Tennessee Health Science Center, Memphis, USA
,
Yoon-Keun KimDepartment of Life ScienceDivision of Molecular and Life Sciences, Pohang University of Science and Technology, Pohang, Republic of Korea
,
Jan LötvallDepartment of Internal MedicineKrefting Research Centre, University of Gothenburg, Gothenburg, Sweden
,
Daehee HwangSchool of Interdisciplinary Bioscience and BioengineeringPohang University of Science and Technology, Pohang, Republic of KoreaCorrespondence[email protected]
&
Yong Song GhoDepartment of Life ScienceDivision of Molecular and Life Sciences, Pohang University of Science and Technology, Pohang, Republic of KoreaCorrespondence[email protected]
 show all
Article: 20384 | Received 05 Jan 2013, Accepted 20 Feb 2013, Published online: 20 Mar 2013

References

  • Grimm R, Singh H, Rachel R, Typke D, Zillig W, Baumeister W. Electron tomography of ice-embedded prokaryotic cells. Biophys J. 1998; 74: 1031–42.
  • Lee EY, Choi DY, Kim DK, Kim JW, Park JO, Kim S, etal. Gram-positive bacteria produce membrane vesicles: proteomics-based characterization of Staphylococcus aureus-derived membrane vesicles. Proteomics. 2009; 9: 5425–36.
  • Lee EY, Choi DS, Kim KP, Gho YS. Proteomics in gram-negative bacterial outer membrane vesicles. Mass Spectrometry Rev. 2008; 27: 535–55.
  • Thery C, Ostrowski M, Segura E. Membrane vesicles as conveyors of immune responses. Nat Rev Immunol. 2009; 9: 581–93.
  • Choi DS, Kim DK, Kim YK, Gho YS. Proteomics, transcriptomics, and lipidomics of exosomes and ectosomes. Proteomics. 2013 10.1002/pmic.201200329.
  • Ellen AF, Albers SV, Huibers W, Pitcher A, Hobel CF, Schwarz H, etal. Proteomic analysis of secreted membrane vesicles of archaeal Sulfolobus species reveals the presence of endosome sorting complex components. Extremophiles. 2009; 13: 67–79.
  • Lee EY, Bang JY, Park GW, Choi DS, Kang JS, Kim HJ, etal. Global proteomic profiling of native outer membrane vesicles derived from Escherichia coli. Proteomics. 2007; 7: 3143–53.
  • Simpson RJ, Jensen SS, Lim JW. Proteomic profiling of exosomes: current perspectives. Proteomics. 2008; 8: 4083–99.
  • Valadi H, Ekstrom K, Bossios A, Sjostrand M, Lee JJ, Lotvall JO. Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells. Nat Cell Biol. 2007; 9: 654–9.
  • Hong BS, Cho JH, Kim H, Choi EJ, Rho S, Kim J, etal. Colorectal cancer cell-derived microvesicles are enriched in cell cycle-related mRNAs that promote proliferation of endothelial cells. BMC Genomics. 2009; 10: 556.
  • Subra C, Laulagnier K, Perret B, Record M. Exosome lipidomics unravels lipid sorting at the level of multivesicular bodies. Biochimie. 2007; 89: 205–12.
  • Kim CW, Lee HM, Lee TH, Kang C, Kleinman HK, Gho YS. Extracellular membrane vesicles from tumor cells promote angiogenesis via sphingomyelin. Cancer Res. 2002; 62: 6312–7.
  • Park KS, Choi KH, Kim YS, Hong BS, Kim OY, Kim JH, etal. Outer membrane vesicles derived from Escherichia coli induce systemic inflammatory response syndrome. PloS One. 2010; 5: e11334.
  • Pisitkun T, Shen RF, Knepper MA. Identification and proteomic profiling of exosomes in human urine. Proc Nat Acad Sci USA. 2004; 101: 13368–73.
  • Skog J, Wurdinger T, van Rijn S, Meijer DH, Gainche L, Sena-Esteves M, etal. Glioblastoma microvesicles transport RNA and proteins that promote tumour growth and provide diagnostic biomarkers. Nat Cell Biol. 2008; 10: 1470–6.
  • Simpson RJ, Kalra H, Mathivanan S. ExoCarta as a resource for exosomal research. J Extracellular Vesicles. 2012; 1 18374, doi: http://dx.doi.org/10.3402/jev.v1i0.18374.
  • Mathivanan S, Simpson RJ. ExoCarta: a compendium of exosomal proteins and RNA. Proteomics. 2009; 9: 4997–5000.
  • Kalra H, Simpson RJ, Ji H, Aikawa E, Altevogt P, Askenase P, etal. Vesiclepedia: a compendium for extracellular vesicles with continuous community annotation. PLoS Biol. 2012; 10: e1001450.
  • Choi DS, Yang JS, Choi EJ, Jang SC, Park S, Kim OY, etal. The protein interaction network of extracellular vesicles derived from human colorectal cancer cells. J Proteome Res. 2012; 11: 1144–51.
  • Wang Z, Hill S, Luther JM, Hachey DL, Schey KL. Proteomic analysis of urine exosomes by multidimensional protein identification technology (MudPIT). Proteomics. 2012; 12: 329–38.
  • Ekström K, Valadi H, Sjöstrand M, Malmhäll C, Bossios A, Eldh M, etal. Characterization of mRNA and microRNA in human mast cell-derived exosomes and their transfer to other mast cells and blood CD34 progenitor cells. J Extracellular Vesicles. 2012; 1 18389, doi: http://dx.doi.org/10.3402/jev.v1i0.18389.
  • Choi DS, Choi DY, Hong BS, Jang SC, Kim DK, Lee J, etal. Quantitative proteomics of extracellular vesicles derived from human primary and metastatic colorectal cancer cells. J Extracellular Vesicles. 2012; 1 18704, doi: http://dx.doi.org/10.3402/jev.v1i0.18704.
  • van Hoof A, Parker R. The exosome: a proteasome for RNA?. Cell. 1999; 99: 347–50.
  • Pedrioli PG, Eng JK, Hubley R, Vogelzang M, Deutsch EW, Raught B, etal. A common open representation of mass spectrometry data and its application to proteomics research. Nat Biotechnol. 2004; 22: 1459–66.

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