361
Views
0
CrossRef citations to date
0
Altmetric
Research/review articles

Effects of temperature and fertilization on the structure of total versus active bacterial communities from sub-Antarctic seawater exposed to crude oil and diesel fuel

, , , &
Article: 18521 | Published online: 09 May 2013

References

  • Acinas S.G, Marcelino L.A, Klepac-Ceraj V, Polz M. Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons. Journal of Bacteriology. 2004; 186: 2629–2635.
  • Atlas R.M, Bartha R. Biodegradation of petroleum in seawater at low temperatures. Canadian Journal of Microbiology. 1972; 18: 1851–1855.
  • Bordenave S, Goñi-Urriza M.S, Caumette P, Duran R. Effects of heavy fuel oil on the bacterial community structure of a pristine microbial mat. Applied and Environmental Microbiology. 2007; 73: 6089–6097.
  • Braddock J.F, Ruth M.L, Catterall P.H, Walworth J.L, McCarthy K.A. Enhancement and inhibition of microbial activity in hydrocarbon-contaminated Arctic soils: implications for nutrient-amended bioremediation. Environmental Science & Technology. 1997; 31: 2078–2084.
  • Bragg J.R, Prince R.C, Harner E.J, Atlas R.M. Effectiveness of bioremediation for the Exxon Valdez oil spill. Nature. 1994; 368: 413–418.
  • Brakstad O.G, Lødeng A.G.G. Microbial diversity during biodegradation of crude oil in seawater from the North Sea. Microbial Ecology. 2004; 49: 94–103.
  • Brakstad O.G, Nonstad I, Faksness L.-G, Brandvik P.J. Responses of microbial communities in Arctic sea-ice after contamination by crude petroleum oil. Microbial Ecology. 2008; 55: 540–552.
  • Brosius J, Dull T.J, Sleeter D.D, Noller H.F. Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. Journal of Molecular Biology. 1981; 148: 107–127.
  • Cappello S, Caruso G, Zampino D, Monticelli L.S, Maimone G, Denaro R, Tripodo B, Troussellier M, Yakimov M, Giuliano L. Microbial community dynamics during assays of harbour oil spill bioremediation: a microscale simulation study. Journal of Applied Microbiology. 2007; 102: 184–194.
  • Clarke K.R, Warwich R.M. Primer-E (5) computer program. 2001; Plymouth, UK: Natural Environmental Research Council.
  • Coulon F, McKew B.A, Osborn A.M, McGenity T.J, Timmis K.N. Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters. Environmental Microbiology. 2007; 9: 177–186.
  • Delbès C, Godon J.J, Moletta R. Bacterial and archaeal 16S rDNA and rRNA dynamics during an acetate crisis in an anaerobic digestor ecosystem. FEMS Microbiology Ecology. 2001; 35: 19–26.
  • Deppe U, Richnow H.H, Antranikian W.M.G. Degradation of crude oil by an Arctic microbial consortium. Extremophiles. 2005; 9: 461–470.
  • Delille D, Bassères A, Dessommes A. Seasonal variation of bacteria in sea ice contaminated by diesel fuel and dispersed crude oil. Microbial Ecology. 1997; 33: 97–105.
  • Delille D, Bassères A, Dessommes A, Rosiers C. Influence of daylight on potential biodegradation of diesel and crude oil in Antarctic seawater. Marine Environmental Research. 1998; 45: 259–268.
  • Delille D, Pelletier E, Rodríguez-Blanco A, Ghiglione J.F. Effects of nutrient and temperature on degradation of petroleum hydrocarbons in sub-Antarctic coastal seawater. Polar Biology. 2009; 32: 1521–1528.
  • Delille D, Perret E. Influence of temperature on growth potential of southern polar bacteria. Microbial Ecology. 1989; 18: 117–123.
  • DeLong E.F, Wickham G.S, Pace N.R. Phylogenetic stains: ribosomal RNA-based probes for the identification of single cells. Science. 1989; 243: 1360–1363.
  • Ducklow H.W, Myers K.M.S, Erickson M, Ghiglione J.F, Murray A.E. Response of a summertime Antarctic marine bacterial community to glucose and ammonium enrichment. Aquatic Microbial Ecology. 2011; 64: 205–220.
  • Eriksson M, Ka J.O, Mohn W.W. Effects of low temperature and freeze–thaw cycles on hydrocarbon biodegradation in Arctic tundra soil. Applied and Environmental Microbiology. 2001; 67: 5107–5112.
  • Gentile G, Giuliano L, D'Auria G, Smedile F, Azzaro M, De Domenico M, Yakimov M.M. Study of bacterial communities in Antarctic coastal waters by a combination of 16S rRNA and 16S rDNA sequencing. Environmental Microbiology. 2006; 8: 2150–2161.
  • Gerdes B, Brinkmeyer R, Dieckmann G, Helmke E. Influence of crude oil on changes of bacterial communities in Arctic sea-ice. FEMS Microbiology Ecology. 2005; 53: 129–139.
  • Ghiglione J.F, Conan P, Pujo-Pay M. Diversity of total and active free-living vs. particle-attached bacteria in the euphotic zone of the NW Mediterranean Sea. FEMS Microbiology Letters. 2009; 299: 9–21.
  • Ghiglione J.F, Larcher M, Lebaron P. Spatial and temporal scales of variation in the bacterioplankton community structure in the NW Mediterranean Sea. Aquatic Microbial Ecology. 2005; 40: 229–240.
  • Ghiglione J.F, Murray A. Pronounced summer to winter differences and higher wintertime richness in coastal sub-Antarctic and Antarctic marine bacterioplankton. Environmental Microbiology. 2012; 14: 617–629.
  • Givskov M, Eberl L, Moller S, Poulsen L.K, Molin S. Responses to nutrient starvation in Pseudomonas putida strain KT2442: analysis of general crossprotection, cell shape, and macromolecular content. Journal of Bacteriology. 1994; 176: 7–14.
  • Head I.M, Jones D.M, Röling W.F. Marine microorganisms make a meal of oil. Nature Reviews Microbiology. 2006; 4: 173–182.
  • Hebenbrock K, Williams P.M, Karger B.L. Single strand conformational polymorphism using capillary electrophoresis with two-dye laser-induced fluorescence detection. Electrophoresis. 1995; 16: 1429–1436.
  • Hong H, Pruden A, Reardon K.F. Comparison of CE-SSCP and DGGE for monitoring a complex microbial community remediating mine drainage. Journal of Microbiological Methods. 2007; 69: 52–64.
  • Karl D.M. The grounding of the Bahia Paraiso: microbial ecology of the 1989 Antarctic spill. Microbial Ecology. 1992; 24: 77–89.
  • Kemp P.F, Lee S, Laroche J. Estimating the growth rate of slowly growing marine bacteria from RNA content. Applied and Environmental Microbiology. 1993; 59: 2594–2601.
  • Kirchman D.L, Moran X.A, Ducklow H. Microbial growth in the polar oceans—role of temperature and potential impact of climate change. Nature Reviews Microbiology. 2009; 7: 451–459.
  • Klappenbach J.A, Dunbar J.M, Schmidt T.M. rRNA copy number reflects ecological strategies of bacteria. Applied and Environmental Microbiology. 2000; 64: 1328–1333.
  • Ladousse A, Tramier B. Results of 12 years of research in spilled oil bioremediation: INIPOL EAP 22. Proceedings of the 1991 Oil Spill Conference (Prevention, Behaviour, Control, Cleanup), March 4–7, 1991. 1991; Washington, DC: American Petroleum Institute. 577–581.
  • Lami R, Ghiglione J.F, Desdevises Y, West N.J, Lebaron P. Annual patterns of presence and activity of marine bacteria monitored by 16S rDNA–16S rRNA fingerprints in the coastal NW Mediterranean Sea. Aquatic Microbial Ecology. 2009; 54: 199–210.
  • Leahy J.G, Colwell R.R. Microbial degradation of hydrocarbons in the environment. Microbiological Reviews. 1990; 54: 305–315.
  • Lee D.H, Zo Y.G, Kim S.J. Nonradioactive method to study genetic profiles of natural bacterial communities by PCR-single-strand-conformation-polymorphism. Applied and Environmental Microbiology. 1996; 62: 3112–3120.
  • Mills D.K, Fitzgerald K, Litchfield C.D, Gillevet P.M. A comparison of DNA profiling techniques for monitoring nutrient impact on microbial community composition during bioremediation of petroleum-contaminated soils. Journal of Microbiological Methods. 2003; 54: 57–74.
  • Moeseneder M.M, Arrieta J.M, Herndl G.J. A comparison of DNA- and RNA-based clone libraries from the same marine bacterioplankton community. FEMS Microbiology Ecology. 2005; 51: 341–352.
  • Nedwell D.B. Effect of low temperature on microbial growth: lowered affinity for substrates limits growth at low temperature. FEMS Microbiology Ecology. 1999; 30: 101–111.
  • Pelz O, Tesar M, Wittich R.M, Moore E.R.B, Timmis K.N, Abraham W.-R. Towards elucidation of microbial community metabolic pathways: unravelling the network of carbon sharing in a pollutant degrading bacterial consortium by immunocapture and isotope ratio mass spectroscopy. Environmental Microbiology. 1999; 1: 167–174.
  • Pomeroy L.R, Wiebe W.J. Temperature and substrates as interactive limiting factors for marine heterotrophic bacteria. Aquatic Microbial Ecology. 2001; 23: 187–204.
  • Poulsen L.K, Ballard G, Stahl D.A. Use of rRNA fluorescence in situ hybridization for measuring the activity of single cells in young and established biofilms. Applied and Environmental Microbiology. 1993; 59: 1354–1360.
  • Rodríguez-Blanco A, Antoine V, Pelletier E, Delille D, Ghiglione J.F. Effects of temperature and fertilization on total vs. active bacterial communities exposed to crude and diesel oil pollution in NW Mediterranean Sea. Environmental Pollution 158, 663–673. Erratum: Environmental Pollution. 2010; 159: 348–350.
  • Rodríguez-Blanco A, Ghiglione J.F, Catala P, Casamayor E.O, Lebaron P. Spatial comparison of total vs. active bacterial populations by coupling genetic fingerprinting and clone library analyses in the NW Mediterranean Sea. FEMS Microbiology Ecology. 2009; 67: 30–42.
  • Schafer H, Bernard L, Courties C, Lebaron P, Servais P, Pukall R, Stackebrandt E, Troussellier M, Guindulain T, Vives-Rego J, Muyzer G. Microbial community dynamics in Mediterranean nutrient-enriched seawater mesocosms: changes in the genetic diversity of bacterial populations. FEMS Microbiology Ecology. 2001; 34: 243–253.
  • Tumeo M.A, Wolk A.E. Assessment of the presence of oil-degrading microbes at McMurdo Station. Antarctic Journal of the United States. 1994; 29: 375–377.
  • Troussellier M, Schafer H, Batailler N, Bernard L, Courties C, Lebaron P, Muyzer G, Servais P, Vives Rego J. Bacterial activity and genetic richness along an estuarine gradient (Rhone River plume, France). Aquatic Microbial Ecology. 2002; 28: 13–24.
  • Wardell L.J. Potential for bioremediation of fuel-contaminated soil in Antarctica. Journal of Soil Contamination. 1995; 4: 111–121.
  • Xia W.X, Li J.C, Zheng X.L, Bi X.J, Shao J.L. Enhanced biodegradation of diesel oil in seawater supplemented with nutrients. Engineering in Life Sciences. 2006; 6: 80–85.
  • Yergeau E, Arbour M, Brousseau R, Juck D, Lawrence J.R, Masson L, Whyte L.G, Greer C.W. Microarray and real-time PCR analyses of the responses of High-Arctic soil bacteria to hydrocarbon pollution and bioremediation treatments. Applied and Environmental Microbiology. 2009; 75: 6258–6267.
  • Zemb O, Haegeman B, Delgenes J.P, Lebaron P, Godon J.J. Safum: statistical analysis of SSCP fingerprints using PCA projections, dendrograms and diversity estimators. Molecular Ecology Notes. 2007; 7: 767–770.