Taxonomy and phylogeny of the Fusarium dimerum species group

LITERATURE CITED

• Anaissie EJ, Kuchar RT, Rex JH, Francesconi A, Kasai M, Muller FM, Lozano-Chiu M, Summerbell RC, Dignani MC, Chanock SJ, Walsh TJ. 2001. Fusariosis associated with pathogenic Fusarium species colonization of a hospital water system: a new paradigm for the epidemiology of opportunistic mold infections. Clinic Infect Dis 33:1871–1878.
   Google Scholar
• Aoki T, O’Donnell K, Homma Y, Lattanzi AR. 2003. Sudden death syndrome of soybean is caused by two morphologically and phylogenetically distinct species within the Fusarium solani species complex—Fusarium virguliforme in North America and F. tucumaniae in South America. Mycologia 95:660–684.
   Google Scholar
• Aptroot A. 2006. Mycosphaerella and its anamorphs 2. Conspectus of Mycosphaerella. CBS Biodiversity Series 5. Utrecht, the Netherlands: Centraalbureau voor Schimmelcultures. 231 p.
   Google Scholar
• Austen B, McCarthy H, Wilkins B, Smith A, Duncombe A. 2001. Fatal disseminated fusarium infection in acute lymphoblastic leukaemia in complete remission. J Clinic Pathol 54:488–490.
   Google Scholar
• Baayen RP, O’Donnell K, Bonants PJM, Cigelnik E, Kroon LPNM, Roebroeck EJA, Waalwijk C. 2000. Gene genealogies and AFLP analyses within the Fusarium oxysporum complex identify monophyletic and non-monophyletic formae speciales causing wilt and rot disease. Phytopathology 90:891–900.
   Google Scholar
• Bachmann HP, Bobst C, Bütikofer U, Casey MG, Dalla Torre M, Fröhlich-Wyder MT, Fürst M. 2005. Occurrence and significance of Fusarium domesticum alias Anticollanti on smear-ripened cheeses. LWT-Food Sci Technol 38:399–407.
   Google Scholar
• Barthlott W, Rafiqpoor MD. 2006. Nees von Esenbeck und die Geschichte der frühen Botanik an der Universität Bonn. Acta Historic Leopold 47:233–249.
   Google Scholar
• Bigley VH, Duarte RF, Gosling RD, Kibbler CC, Seaton S, Potter M. 2004. Fusarium dimerum infection in a stem cell transplant recipient treated successfully with voriconazole. Bone Marrow Transplant 34:815–817.
   Google Scholar
• Bilai VI. 1955. Fusarii. Kiev: Izd. Akad. Nauk Ukrain. SSR. 320 p.
   Google Scholar
• Booth C. 1971. The genus Fusarium. Kew, Surrey, UK: Commonwealth Mycological Institute. 237 p.
   Google Scholar
• Brunzini MA, Zapater RC, Cortina HA. 1980. Diagnosis and treatment in a case of keratomycosis due to Fusarium dimerum. Archivos de Oftalmologia de Buenos Aires 55: 107–109.
   Google Scholar
• Camin A-M, Michelet C, Langanay T, de Place C, Chevrier S, Guého E, Guiguen C. 1999. Endocarditis due to Fusarium dimerum four years after coronary artery bypass grafting. Clinic Infect Dis 28:150.
   Google Scholar
• Chang DC, Grant GB, O’Donnell K, Wannemuehler KA, Noble-Wang J, Rao CY, Jacobson LM, Crowell CS, Sneed RS, Lewis FMT, Schaffzin JK, Kainer MA, Genese CA, Alfonso EC, Jones DB, Srinivasan A, Fridkin SK, Park BJ. 2006. Multistate outbreak of Fusarium keratitis associated with use of a contact lens solution. J Am Med Assoc 296:953–963.
   Google Scholar
• Corlett M. 1991. An annotated list of the published names in Mycosphaerella and Sphaerella. Mycologia Memoir No. 18. The New York Botanical Garden. 328 p.
   Google Scholar
• Diaz MR, Boekhout T, Theelen B, Bovers M, Cabañes FJ, Fell JW. 2006. Microcoding and flow cytometry as a high-throughput fungal identification system for Malassezia species. J Med Microbiol 55:1197–1209.
   Google Scholar
• Domsch KH, Gams W, Anderson T. 2007. Compendium of soil fungi. 2nd ed. Eching, Germany: IHW-Verlag. 672 p.
   Google Scholar
• Eken C, Hasenekoğlu İ, Çoruh İ , Demirer E, Demirci E. 2007. First report of Fusarium dimerum on Solanum tuberosum in Turkey. New disease reports. Mar 2007.
   Google Scholar
• Ellis JB, Everhart BM. 1891. New species of fungi from various localities. Proc Acad Nat Sci Philadelphia 43: 76–93.
   Google Scholar
• Fries EM. 1832. Systema mycologicum Vol. 3. Sectio 2. Greifswald, p 261–524.
   Google Scholar
• Gams W, Hoekstra ES, Aptroot A, eds. 1998. CBS Course of Mycology. 4th ed. Baarn, the Netherlands: Centraal-bureau voor Schimmelcultures.
   Google Scholar
• Gerlach W, Nirenberg HI. 1982. The genus Fusarium—a pictorial atlas. Mitt Biol Bundesanst Land-Forstw Berlin-Dahlem 209:1–406.
   Google Scholar
• Hageskal G, Knutsen AK, Gaustad P, de Hoog GS, Skaar I. 2006. Diversity and significance of mold species in Norwegian drinking water. Appl Environ Microbiol 72: 7586–7593.
   Google Scholar
• Hawksworth DL. 1979. The lichenicolous hyphomycetes. Bull Brit Museum (Natural History), Botany series 6: 183–300.
   Google Scholar
• Hennequin C, Abachin E, Symoens F, Lavarde V, Reboux G, Nolard N, Berche P. 1999. Identification of Fusarium species involved in human infections. J Clinic Microbiol 37:3586–3589.
   Google Scholar
• Holmgren PK, Holmgren NH. 1998 to present (continuously updated). Index Herbariorum. New York Botanical Garden. http://sciweb.nybg.org/science2/IndexHerbariorum.asp
   Google Scholar
• Jeschke N, Nelson PE, Marasas WFO. 1990. Fusarium species isolated from soil samples collected at different altitudes in the Transkei, southern Africa. Mycologia 82:727–733.
   Google Scholar
• Kornerup A, Wanscher JH. 1978. Methuen handbook of colour. London: Eyre Methuen.
   Google Scholar
• Krcmery V Jr, Jesenska Z, Spanik S, Gyarfas J, Nogova J, Botek R, Mardiak J, Sufliarsky J, Sisolakova J, Vanickova M, Kunova A, Studena M, Trupl J. 1997. Fungaemia due to Fusarium spp. in cancer patients. J Hosp Infect 36:223–228.
   Google Scholar
• Letscher-Bru V, Campos F, Waller J, Randriamahazaka R, Candolfi E, Herbrecht R. 2002. Successful outcome of treatment of a disseminated infection due to Fusarium dimerum in a leukemia patient. J Clin Microbiol 40: 1100–1102.
   Google Scholar
• McNeill J, Barry FR, et al. 2006. International Code of Botanical Nomenclature (Vienna Code), adopted by the 17th International Botanical Congress, Vienna, Austria, Jul 2005: Gantner Verlag, Ruggell. Regnum Vegetabile 146.
   Google Scholar
• Nelson PE, Toussoun TA, Marasas WFO. 1983. Fusarium species: an illustrated manual for identification. University Park: Pennsylvania State University Press. 193 p.
   Google Scholar
• Nicot P, Decognet V, Bardin M, Romiti C, Trottin Y, Fournier C, Leyre JM. 2003. Potential for including Microdochium dimerum a biocontrol agent against Botrytis cinerea into an integrated protection scheme of greenhouse tomatoes. In: Colloque International, Avignon (FRA), 2003/09/17–19. Centre Technique Interprofessionnel des Fruits et Légumes, Paris (FRA), INRA Avignon (FRA): Tomate sous abri. Protection intégrée. Agriculture biologique, p 19–23.
   Google Scholar
• Nir-Paz R, Strahilevitz J, Shapiro M, Keller N, Goldschmied-Reouven A, Yarden O, Block C, Polacheck I. 2004. Clinical and epidemiological aspects of infections caused by Fusarium species: a collaborative study from Israel. J Clinic Microbiol 42:3456–3461.
   Google Scholar
• Nirenberg HI. 1976. Untersuchungen über die morphologische und biologische Differenzierung in der Fusarium-Sektion Liseola. Mitt Biol Bundesanst Land-Forstw Berlin-Dahlem 169:1–117.
   Google Scholar
• O’Donnell K. 1993. Fusarium and its near relatives. In: Reynolds DR, Taylor JW, eds. The fungal holomorph: mitotic, meiotic and pleomorphic speciation in fungal systematics. Wallingford, England: CAB International. p 225–233.
   Google Scholar
• ———. 2000. Molecular phylogeny of the Nectria haemato-cocca-Fusarium solani species complex. Mycologia 92: 919–938.
   Google Scholar
• ———, Cigelnik E. 1997. Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous. Mol Phylogenet Evol 7:103–116.
   Google Scholar
• ———, ———, Casper HH. 1998a. Molecular phylogenetic, morphological and mycotoxin data support reidentification of the Quorn mycoprotein fungus as Fusarium venenatum. Fungal Genet Biol 23:57–67.
   Google Scholar
• ———, ———, Nirenberg HI. 1998b. Molecular systematics and phylogeography of the Gibberella fujikuroi species complex. Mycologia 90:465–493.
   Google Scholar
• ———, Kistler HC, Cigelnik E, Ploetz RC. 1998c. Multiple evolutionary origins of the fungus causing Panama disease of banana: concordant evidence from nuclear and mitochondrial gene genealogies. Proc Nat Acad Sci USA 95:2044–2049.
   Google Scholar
• ———, Sarver BAJ, Brandt M, Chang DC, Noble-Wang J, Park BJ, Sutton DA, Benjamin L, Lindsley M, Padhye A, Geiser DM, Ward TJ. 2007. Phylogenetic diversity and microsphere array-based genotyping of human pathogenic fusaria, including isolates from the 2005–06 multistate contact lens-associated U.S. keratitis outbreaks. J Clinic Microbiol 45:2235–2248.
   Google Scholar
• ———, Sutton DA, Rinaldi MG, Magnon KC, Cox PA, Revankar SG, Sanche S, Geiser DM, Juba JH, van Burik JA, Padhye A, Anaissie EJ, Francesconi A, Walsh TJ, Robinson JS. 2004. Genetic diversity of human pathogenic members of the Fusarium oxysporum complex inferred from multilocus DNA sequence data and amplified fragment length polymorphism analyses: evidence for the recent dispersion of a geographically widespread clonal lineage and nosocomial origin. J Clinic Microbiol 42:5109–5120.
   Google Scholar
• Penzig AGO. 1882. Funghi agrumicoli: contribuzione allo studio dei funghi parassiti degli agrumi. Padova, 124 p., 136 col. plates.
   Google Scholar
• Raillo AI. 1950. Moskva. Griby roda Fuzarium. 415 p.
   Google Scholar
• Raper JR, Raper CA. 1972. Genetic analysis of the life cycle of Agaricus bisporus. Mycologia 64:1088–1117.
   Google Scholar
• Pitt JI, Hocking AD. 1997. Fungi and food spoilage. 2nd ed. London: Blackie Academic & Professional. 593 p.
   Google Scholar
• Rossman AY, Samuels GJ, Rogerson CT, Lowen R. 1999. Genera of the Bionectriaceae, Hypocreaceae and Nectriaceae (Hypocreales, Ascomycetes). Stud Mycol 42:1–248.
   Google Scholar
• Sallaber S, Lori G, Galeppi I. 1999. Keratomycosis due to Fusarium dimerum. Enfermedades Infecciosas y Microbiologia Clinica 17:146–147.
   Google Scholar
• Samuels GJ, Dodd SL, Lu B-S, Petrini O, Schroers H-J, Druzhinina IS. 2006. The Trichoderma koningii aggregate species. Stud Mycol 56:67–133.
   Google Scholar
• Sinclair WA, Lyon HH, Johnson WT. 1987. Diseases of trees and shrubs. Ithaca and London: Cornell University Press. 575 p.
   Google Scholar
• Starkey DE, Ward TJ, Aoki T, Gale LR, Kistler HC, Geiser DM, Suga H, Tóth B, Varga J, O’Donnell K. 2007. Global molecular surveillance reveals novel Fusarium head blight species and trichothecene toxin diversity. Fungal Genet Biol 44:1191–1204.
   Google Scholar
• Summerbell RC. 2003. Aspergillus, Fusarium, Sporothrix, Piedraia and their relatives. In: Howard DH, ed. Pathogenic fungi in humans and animals. 2nd ed. New York: Marcel Dekker Press. p 237–498.
   Google Scholar
• ———, Kane J. 1997. Physiological and other special tests for identifying dermatophytes. In: Kane J, Summerbell R, eds. Laboratory handbook of dermatophytes. Belmont, California: Star Publishing Co. p 45–79.
   Google Scholar
• ———, Levesque CA, Seifert KA, Bovers M, Fell JW, Diaz MR, Boekhout T, de Hoog GS, Stalpers J, Crous PW. 2005. Microcoding: the second step in DNA barcoding. Philos Trans R Soc Lond B Biol Sci 360:1897–1903.
   Google Scholar
• Swofford DL. 2003. PAUP*: phylogenetic analysis using parsimony (*and other methods), version 4.0b10. Sunderland, Massachusetts: Sinauer Associates.
   Google Scholar
• Torzilli AP, Balakrishna S, O’Donnell K, Lawrey JD. 2002. The degradative activity of a lichenicolous Fusarium sp. compared to related entomogenous species. Mycol Res 106:1204–1210.
   Google Scholar
• van der Aa HA, Vanev S. 2002. A revision of the species described in Phyllosticta. Utrecht, the Netherlands: Centraalbureau voor Schimmelcultures. 510 p.
   Google Scholar
• von Arx JH. 1957. Revision der zu Gloeosporium gestellten Pilze. Verhandelingen Konink Akad Wetenschappen 51:1–153.
   Google Scholar
• ———. 1970. A revision of the fungi classified as Gloeosporium. Bibl Mycol 24:1–203.
   Google Scholar
• ———. 1984. Notes on Monographella and Microdochium. Trans Br Mycol Soc 83:374.
   Google Scholar
• Vismer HF, Marasas WFO, Rheeder JP, Joubert JJ. 2002. Fusarium dimerum as a cause of human eye infections. Med Mycol 40:399–406.
   Google Scholar
• White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: a guide to methods and amplifications. San Diego: Academic Press. p 315–322.
   Google Scholar
• Wolf FA. 1912. Some fungous diseases of the prickly pear, Opuntia lindheimeri Englm. Ann Mycol 10:113–134.
   Google Scholar
• Wollenweber HW. 1916, 1924, 1930. Fusaria autographice delineata. Berlin: Selbstverlag, 1100 plates.
   Google Scholar
• ———, Reinking OA. 1935. Die Fusarien, ihre Beschreibung, Schadwirkung und Bekämpfung. Berlin: Paul Parey. 335 p.
   Google Scholar
• Zapater RC, de Arrechea A, Guevara VH. 1972. Kertomycosis due to Fusarium dimerum. Sabouraudia 10:274–275.
   Google Scholar
• ———, Arrechea A. 1975. Mycotic keratitis by Fusarium. A review and report of two cases. Ophthalmologica 170: 1–12.
   Google Scholar
• Zhang N, O’Donnell K, Sutton DA, Nalim FA, Summerbell RC, Padhye AA, Geiser DM. 2006. Members of the Fusarium solani species complex that cause infections in both humans and plants are common in the environment. J Clinic Microbiol 44:2186–2190.
   Google Scholar