LITERATURE CITED
- Barr ME. 1977. Acanthostigmella (Herpotrichiellaceae). Mycotaxon 7:17–23.
- ———. 1980. On the family Tubeufiaceae (Pleosporales). Mycotaxon 12:137–167.
- ———. 1990. Prodromus to nonlichenized, pyrenomycetous members of class Hymenoascomycetes. Mycotaxon 39:43–184.
- de Notaris G. 1863. Sfériacei Italici. Centuria I. Fasc. 2–3. Genova. 90 p, 120 pl.
- Erikkson OE, Hawksworth DL. 1998. Outline of the Ascomycetes —1998. Syst Ascomyc 16:83–296.
- Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791.
- Gardes M, Bruns TD. 1993. ITS primers with enhanced specificity for basidiomycetes —application to the identification of mycorrhizae and rusts. Mol Ecol 2: 113–118.
- Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98.
- Huelsenbeck JP, Ronquist F. 2001. MrBayes: Bayesian inference of phylogeny. Bioinformatics 17:754–755.
- Huhndorf SM. 1991. A method for sectioning ascomycete herbarium specimens for light microscopy. Mycologia 83:520–524.
- Kodsueb R, Jeewon R, Dhanasekaran V, McKenzie EHC, Lumyong P, Lumyong S, Hyde KD. 2006. Systematic revision of Tubeufiaceae based on morphological and molecular data. Fungal Divers 21:105–130.
- ———, Lumyong S, Lumyong P, McKenzie EHC, Ho WH, Hyde KD. 2004. Acanthostigma and Tubeufia species, including T. claspisphaeria sp. nov., from submerged wood in Hong Kong. Mycologia 96:667–674.
- Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG. 2007. Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947–2948.
- Lutzoni F, Wagner P, Reeb V, Zoller S. 2000. Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses without violating positional homology. Syst Biol 49:628–651.
- Miller AN, Vasilyeva LN, Rogers JD. 2007. Chlorostroma subcubisporum gen. et sp. nov. and notes on the systematic position of Thuemenella cubispora. Sydowia 59:138–147.
- Müller E. 1965. Beobachtungen an Ascomyceten. Sydowia 18:86–105.
- Posada D, Crandall KA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 1:817–818.
- Réblova M, Barr ME. 2000. The genus Acanthostigma (Tubeufiaceae, Pleosporales). Sydowia 52:258–285.
- Rehner SA, Samuels GJ. 1995. Molecular systematics of the Hypocreales: a teleomorph gene phylogeny and the status of their anamorphs. Can J Bot 73(Supplement 1):S816–S823.
- Rodríguez F, Oliver JF, Marín A, Medina JR. 1990. The general stochastic model of nucleotide substitution. J Theor Biol 142:485–501.
- Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–1574.
- Rossman AY. 1987. The Tubeufiaceae and similar Loculoascomycetes. Mycol Pap 157:1–71.
- Schoch CL, Shoemaker RA, Seifert KA, Hambleton S, Spatafora JW, Grous PW. 2006. A multigene phylogeny of the Dothideomycetes using four nuclear loci. Mycologia 98:1041–1052.
- Swofford DL. 2002. PAUP*: phylogenetic analysis using parsimony (* and other methods). Version 4.0b10. Sunderland, Massachusetts: Sinauer Associates.
- Tamura K, Nei M. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10:512–526.
- Tsui CKM, Sivichai S, Berbee ML. 2006. Molecular systematics of Helicoma, Helicomyces and Helicosporium and their teleomorphs inferred from rDNA sequences. Mycologia 98:94–104.
- ———, ———, Rossman AY, Berbee ML. 2007. Tubeufia asiana, the teleomorph of Aquaphila albicans in the Tubeufiaceae, Pleosporales, based on cultural and molecular data. Mycologia 99:884–894.
- Vilgalys R, Hester M. 1990. Rapid identification and mapping of enzymatically amplified ribosomal DNA from several Crytococcus species. J Bacteriol 172:4238–4246.
- von Arx JA, Müller E. 1975. A re-evaluation of the bitunicate Ascomycetes with the keys to families and genera. Stud Mycol 9:1–159.
- White TJ, Bruns T, Lee SB, Taylor JW. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: a guide to methods and application. San Diego: Academic Press. p 315–322.