Co-occurrence and genotypic distribution of Phytophthora species recovered from watersheds and plant nurseries of eastern Tennessee

LITERATURE CITED

• Blair JE, Coffey MD, Park SY, Geiser DM, Kang S. 2007. A multilocus phylogeny for Phytophthora utilizing markers derived from complete genome sequences. Fungal Genet Biol 45:266–277.
   Google Scholar
• Braiser CM, Cooke DEL, Duncan JM, Hansen EM. 2003. Multiple new phenotypic taxa from trees and riparian ecosystems in Phytophthora gonapodyides-P. megasperma ITS Clade 6, which tend to be high-temperature tolerant and either inbreeding or sterile. Mycol Res 107:277–290.
   Google Scholar
• Cooke DEL, Drenth A, Duncan JM, Wagels G, Brasier CM. 2000. A molecular phylogeny of Phytophthora and related oomycetes. Fungal Genet Biol 30:17–32.
   Google Scholar
• ———, Schena L, Cacciola SO. 2007. Tools to detect, identify and monitor Phytophthora species in natural ecosystems. J Plant Pathol 89:13–28.
   Google Scholar
• Donahoo R, Blomquist CL, Thomas SL, Moulton JK, Cooke DEL, Lamour KH. 2006. Phytophthora foliorum sp. nov., a new species causing leaf blight of azalea. Mycol Res 110:1309–1322.
   Google Scholar
• ———, Lamour KH. 2006. Characterization of Phytophthora species from leaves of nursery woody ornamentals in Tennessee. Hortic Sci 43:1833–1837.
   Google Scholar
• English B, Jensen K, Menard J. 2003. Economic impacts of agriculture and forestry in Tennessee, 2000. Knoxville: Univ. Tennessee Institute Agriculture, Dept. Agricultural Economics Research Series 02–03. 149 p.
   Google Scholar
• Erwin DC, Ribeiro OK. 1996. Phytophthora diseases worldwide. St Paul, Minnesota: American Phytopathological Society.
   Google Scholar
• Fichtner EJ, Lynch SC, Rizzo DM. 2007. Detection, distribution, sporulation and survival of Phytophthora ramorum in a California redwood-tanoak forest soil. Phytopathology 97:1366–1375.
   Google Scholar
• Forster H, Oudemans P, Coffey MD. 1990. Mitochondrial and nuclear DNA diversity within six species of Phytophthora. Exp Mycol 14:18–31.
   Google Scholar
• Frankel SJ. 2008. Sudden oak death and Phytophthora ramorum in the USA: a management challenge. Australas Plant Pathol 37:19–25.
   Google Scholar
• Ghimire SR, Richardson PA, Moorman GW, Lea-Cox JD, Ross DS, Hong CX. 2009. An in-situ baiting bioassay for detecting Phytophthora species in irrigation runoff containment basins. Plant Pathol 58:577–583.
   Google Scholar
• Greslebin AG, Hansen EM, Winton LM, Rajchenberg M. 2005. Phytophthora species from declining Austrocedrus chilensis forests in Patagonia, Argentina. Mycologia 97: 218–228.
   Google Scholar
• Habera L, Smith N, Donahoo R, Lamour KH. 2004. Use of a single primer to fluorescently label selective amplified fragment length polymorphism reactions. Biotechniques 37:902–903.
   Google Scholar
• Hansen EM. 2008. Alien forest pathogens: Phytophthora species are changing world forests. Boreal Environ Res 13:33–41.
   Google Scholar
• ———, Goheen DJ, Jules E, Ullian B. 2000. Managing Port-Orford-Cedar and the introduced pathogen Phytophthora lateralis. Plant Dis 84:4–14.
   Google Scholar
• Hong C, Richardson PA, Kong P. 2008a. Pathogenicity to ornamental plants of some existing species and new taxa of Phytophthora from irrigation water. Plant Dis 92: 1201–1207.
   Google Scholar
• ———, Gallegly ME, Richardson PS, Kong P, Moorman GW. 2008b. Phytophthora irrigata, a new species isolated from irrigation reservoirs and rivers in eastern United States of America. FEMS Microbiol Lett 285:203–211.
   Google Scholar
• Joseph MC, Coffee MD. 1984. Development of laboratory resistance to metalaxyl in Phytophthora citricola. Phytopathology 74:1411–1414.
   Google Scholar
• Lamour KH, Finley L. 2006. A strategy for recovering high quality genomic DNA from a large number of Phytophthora isolates. Mycologia 98:514–517.
   Google Scholar
• Lee SB, Taylor JW. 1992. Phylogeny of five fungus-like protoctistan Phytophthora species, inferred from the internal transcribed spacers of ribosomal DNA. Mol Biol Evol 9:636–653.
   Google Scholar
• Nechwatal J, Mendgen K. 2006. Pythium litorale sp. nov., a new species from the littoral of Lake Constance, Germany. FEMS Microbiol Lett 255:96–101.
   Google Scholar
• Park J, Park B, Veeraraghavan N, Blair JE, Geiser DM, Isard S, Mansfield MA, Nikolaeva E, Park SY, Russo J, Kim SH, Greene M, Ivors KL, Balci Y, Peiman M, Erwin DC, Coffey MD, Jung K, Lee YH, Rossman A, Farr D, Cline E, Grü NJ, Luster DG, Schrandt J, Martin F, Ribeiro OK, Makalowska I, Kang S. 2008. Phytophthora database: a cyberinfrastructure supporting the identification and monitoring of Phytophthora. Plant Dis 92:966–972.
   Google Scholar
• Rizzo DM, Garbelotto M, Davidson JM, Slaughter GW, Koike ST. 2002. Phytophthora ramorum as the cause of extensive mortality of Quercus spp. and Lithocarpus densiflora in California. Plant Dis 86:205–214.
   Google Scholar
• ———, ———, Hansen EM. 2005. Phytophthora ramorum: integrative research and management of an emerging pathogen in California and Oregon forests. Annu Rev Phytopathol 43:309–335.
   Google Scholar
• Schwingle BW, Smith JA, Blanchette RA. 2007. Phytophthora Species associated with diseased woody ornamentals in Minnesota nurseries. Plant Dis 91:97–102.
   Google Scholar
• Shew HD. 1985. Response of Phytophthora parasitica var. nicotianae to metalaxyl exposure. Plant Dis 69:559–562.
   Google Scholar
• Stokstad E. 2004. Nurseries may have shipped sudden oak death pathogen nationwide. Science 303:1959.
   Google Scholar
• Tjosvold SA, Chambers DL, Koike ST, Mori SR. 2008. Disease on nursery stock as affected by environmental factors and seasonal inoculum levels of Phytophthora ramorum in stream water used for irrigation. Plant Dis 92:1566–1573.
   Google Scholar
• Vos PR, Hogers R, Bleeker M. 1995. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23:4407–4414.
   Google Scholar
• Werres S, Marwitz R, Man in’t Veld WA. 2001. Phytophthora ramorum sp. nov., a new pathogen of Rhododendron and Viburnum. Mycol Res 105:1155–1165.
   Google Scholar
• ———, Merlier D. 2003. First detection of Phytophthora ramorum mating type A2 in Europe. Plant Dis 87:1266.
   Google Scholar
• White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: a guide to methods and applications. San Diego: Academic Press. p 315–322.
   Google Scholar
• Yakabe LE, Blomquist CL, Thomas SL, MacDonald JD. 2009. Identification and frequency of Phytophthora species associated with foliar diseases in California ornamental nurseries. Plant Dis 93:884–890.
   Google Scholar
• Young TM, Hodges DG, Rials TG. 2007. The forest products industry of Tennessee. For Prod J 57(4):12–19.
   Google Scholar
• Zhang Z, Schwartz S, Wagner L, Miller W. 2000. A greedy algorithm for aligning DNA sequences. J Computat Biol 7(1–2):203–14.
   Google Scholar