A re-evaluation of Hypochnicium (Polyporales) based on morphological and molecular characters

LITERATURE CITED

• Allmér J, Vasiliauskas R, Ihrmark K, Stenlid J, Dahlberg A. 2006. Wood-inhabiting fungal communities in woody debris of Norway spruce (Picea abies [L.] Karst), as reflected by sporocarps, mycelial isolations and T-RFLP identification. FEMS Microbiol Ecol 55:57–67.
   Google Scholar
• Binder M, Hibbet DS, Larsson KH, Larsson E, Langer E, Langer R. 2005. The phylogenetic distibution of resupinate forms across the major clades of mushroom-forming fungi. Syst Biodivers 3:113–157.
   Google Scholar
• Boidin J, Gilles G. 2000. Basidiomycètes Aphyllophorales de l’île de la Rèunion XX—le genre Hypochnicium. Bull Soc Mycol France 116:159–172.
   Google Scholar
• ———, Lanquetin P. 1971. Basidiomycètes Corticiaceae de la République Centrafricaine III. Le genre Hypochnicium Eriksson. Cah Maboké 9:89–93.
   Google Scholar
• Buyck B, Eyssartier G, Duhem B. 1998. Contribution à un inventaire mycologique de Madagascar. I. Bull Soc Mycol France 114:33–59.
   Google Scholar
• Eriksson J. 1958. Studies in Heterobasidiomycetes and Homobasidiomycetes—Aphyllophorales of Muddus National Park in north Sweden. Symb Bot Uppsala 6: 1–172.
   Google Scholar
• ———, Ryvarden L. 1976. The Corticiaceae of north Europe. Vol 4. Oslo, Norway: Fungiflora. 339 p.
   Google Scholar
• Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791.
   Google Scholar
• Gardes M, Bruns TD. 1993. ITS Primers with enhanced specificity for Basidomycetes—applications to the identification of mycorrhizae and rusts. Mol Ecol 1: 113–118.
   Google Scholar
• Ginns J. 1992. Re-evaluation of reports of 15 uncommon species of Corticium from Canada and the United States. Mycotaxon 44:197–217.
   Google Scholar
• Graham SW, Olmstead RG, Barret SCH. 2002. Rooting phylogenetic trees with distant outgroups: a case study from the Commelinoid Moncots. Mol Biol Evol 19: 1769–1781.
   Google Scholar
• Hallenberg N. 1985. On the Hypochnicium eichleri complex (Basidiomycetes). Mycotaxon 24:431–436.
   Google Scholar
• Hjortstam K. 1986. Hypochnicium subrigescens, a new species of northern Europe. Windahlia 16:69–71.
   Google Scholar
• ———. 1987. Studies in tropical Corticiaceae (Basidiomycetes) VII. Specimens from east Africa, collected by L. Ryvarden II. Mycotaxon 28:19–37.
   Google Scholar
• Huelsenbeck JP, Ronquist F. 2001. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754–755.
   Google Scholar
• ISCC-NBS Centroid Color Charts. Washington, DC: U.S. Dept. of Commerce, National Bureau of Standards.
   Google Scholar
• Jülich W. 1974. The genera of the Hyphodermoideae (Corticiaceae). Persoonia 8:59–97.
   Google Scholar
• ———. 1979. Studies in Resupinate Basidiomycetes VI. On some new taxa. Persoonia 10:325–336.
   Google Scholar
• ———. 1982. Studies in resupinate Basidiomycetes VII. Int J Mycol Lichenol 1:27–37.
   Google Scholar
• Larget B, Simon DL. 1999. Markov chain Monte Carlo algorithms for the Bayesian analysis of phylogenetic trees. Mol Biol Evol 16:750–759.
   Google Scholar
• Larsson KH. 2007. Re-thinking the classification of corticioid fungi. Mycol Res 111:1040–1063.
   Google Scholar
• Larsson E, Larsson KH. 2003. Phylogenetic relationships of russuloid basidiomycetes with emphasis on Aphyllophorales data. Mycologia 95:1037–1065.
   Google Scholar
• Lutzoni F, Kauff F, Cox CJ, McLaughlin D, Celio G, Dentinger B, Padamsee M, Hibbett D, James TY, Baloch E, Grube M, Reeb V, Hofstetter V, Schoch C, Arnold AE, Miadlikowska J, Spatafora J, Johson D, Hambleton S, Crockett M, Shoemaker R, Sung GH, Lü cking R, Lumbsch T, O’Donell K, Binder M, Diederich P, Ertz D, Gueidan C, Hansen K, Harris RC, Hosaka K, Lim YW, Matheny B, Nishida H, Pfister D, Rogers J, Rossman AM, Schmitt I, Sipman H, Stone J, Sugiyama J, Yahr R, Vilgalys R. 2004. Assembling the Fungal Tree of Life: progress, classification and evolution of subcellular traits. Am J Bot 91:1446–1480.
   Google Scholar
• Martín MP, Winka K. 2000. Alternative methods of extracting and amplifying DNA from lichens. Lichenologist 32:189–196.
   Google Scholar
• Matheny PB, Curtis JM, Hofstetter V, Aime MC, Moncalvo JM, Ge ZW, Yang ZL, Slot JC, Ammirati JF, Baroni TJ, Bougher NL, Hughes KW, Lodge DJ, Kerrigan RW, Seidl MT, Aanen DK, DeNitis M, Daniele GM, Desjardin DE, Kropp BR, Norvell LL, Parker A, Vellinga EC, Vilgalys R, Hibbett DS. 2006. Major clades of Agaricales: a multilocus phylogenetic overview. Mycologia 98:982–995.
   Google Scholar
• Nag DK, Huang HV, Berg DE. 1998. Bidirectional chain-termination nucleotide sequencing: transposon Tn5seq1 as a mobile source of primer sites. Gene 64:135–145.
   Google Scholar
• Nilsson RH, Hallenberg N. 2003. Phylogeny of Hypochnicium punctulatum complex as inferred from ITS sequence data. Mycologia 95:54–60.
   Google Scholar
• Nylander JAA. 2004. MrModeltest v2. Uppsala, Sweden: Evolutionary Biology Centre, Uppsala University, Program distributed by author.
   Google Scholar
• Page RDM. 1996. TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosciences 2:357–358.
   Google Scholar
• Parmasto E. 1968. Conspectus Systematis Corticiacearum. Tartu, R.P.S.S. Estonicae: Institutum Zoologicum et Botanicum Academiae Scientiarum. 261 p.
   Google Scholar
• Paulus B, Nilsson H, Hallenberg N. 2007. Phylogenetic studies in Hypochnicium (Basidiomycota), with special emphasis on species from New Zealand. NZ J Bot 45: 139–150.
   Google Scholar
• Rambaut A. 2002. Se-Al: sequences alignment editor v2.0a11. Edinburgh: Institute of Evolutionary Biology, University of Edinburgh, http://tree.bio.ed.ac.uk/software/
   Google Scholar
• Rodríguez F, Oliver JF, Martín A, Medina JR. 1990. The general stochastic model of nucleotide substitution. J Theor Biol 142:485–501.
   Google Scholar
• Stalpers JA, Buchanan PK. 1991. Type studies of species of Pellicularia and Peniophora described by G.H. Cunningham. NZ J Bot 29:331–340.
   Google Scholar
• Swofford DL. 2003. PAUP*: phylogenetic analysis using parsimony (* and other methods). Version 4. Sunderland, Massachusetts: Sinauer Associates.
   Google Scholar
• White TJ, Bruns T, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innes MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: a guide to methods and applications. San Diego, California: Academic Press. p 315–322.
   Google Scholar
• Winka K, Ahlberg C, Eriksson OE. 1998. Are there lichenized Ostropales? Lichenologist 30:455–462.
   Google Scholar