Phylogeny of Cyttaria inferred from nuclear and mitochondrial sequence and morphological data

LITERATURE CITED

• Bellèmere A. 1969. Quelques observations relative à l’infrastructure de l’appareil apical des asques du Bulgaria inquinans Fr. (Discomycete Inopercule). CR Hebd Sea Acad Sci 268:2252–2255.
   Google Scholar
• Berkeley MJ. 1842. On an edible fungus from Tierra del Fuego and allied Chilean species. Trans Linn Soc London 19:37–43.
   Google Scholar
• ———. 1847. Flora Antarctica. In: Hooker JD, ed. The botany of the Antarctic voyage of H.M. discovery ships Erebus and Terror, in the years 1839–1843. London: Reeve Bros. p 447–454.
   Google Scholar
• ———. 1848. Decades of fungi: decade XX. London J Bot 7: 572–579, 1 plate.
   Google Scholar
• Boedijn KB. 1936. The genus Cordierites in the Netherlands Indies. Bull Jardin Bot Buitenzorg Ser 3 13:525–529.
   Google Scholar
• Buchanan J. 1886. On Cyttaria purdiei, Buch. Trans Proc NZ Inst 18:317, plate 11.
   Google Scholar
• Carpenter SE. 1976. Taxonomy, morphology and ontogeny of Gelatinodiscus flavidus. Mycotaxon 3:209–232.
   Google Scholar
• Ciferri R. 1957. Revision of the genus Cordierites Mont. Ist Bot Univ Lab Crittog Pavia Atti Ser 5 14:263–270, 2 plates.
   Google Scholar
• Clements FE, Shear CL. 1931. The genera of fungi. New York: HW Wilson Co. 496 p.
   Google Scholar
• Cook LG, Crisp MD. 2005. Not so ancient: the extant crown group of Nothofagus represents a post-Gondwanan radiation. Proc R Soc B 272:2535–2544.
   Google Scholar
• Crisci JV, Gamundí IJ, Cabello MN. 1988. A cladistic analysis of the genus Cyttaria (Fungi-Ascomycotina). Cladistics 4:279–290.
   Google Scholar
• Darwin C. 1839. Journal of researches into the geology and natural history of the various countries visited by H.M.S. Beagle, under the command of Capt. Fitz Roy, R.N., from 1832 to 1836. London: Henry Colborn. 615 p.
   Google Scholar
• ———. 1846. Journal of researches into the natural history and geology of the countries visited during the voyage of H.M.S. Beagle round the world. New York: Harper & Bros. 675 p.
   Google Scholar
• Dennis RWG. 1978. British ascomycetes. Vaduz: Cramer. 585 p.
   Google Scholar
• Dettmann ME, Pocknall DT, Romero EJ, Zamaloa MC. 1990. Nothofagidites Erdtman and Potonié, 1960: a catalogue of species with notes on the paleogeographic distribution of Nothofagus Bl. (southern beech). NZ Geol Surv Paleontol Bull 60:1–79.
   Google Scholar
• Dixon JR. 1975. Chlorosplenium and its segregates II. The genera Chlorociboria and Chlorencoelia. Mycotaxon 1: 193–237.
   Google Scholar
• Döring H, Triebel D. 1998. Phylogenetic relationships of Bulgaria inferred by 18S rDNA sequence analysis. Cryptogammie Bryol Lichenol 19:123–136.
   Google Scholar
• Eriksson O, Hawksworth DL. 1986. An alphabetical list of the generic names of ascomycetes 1986. Systema Ascomycetum 5:3–111.
   Google Scholar
• Gamundí IJ. 1971. Las Cyttariales sudamericanas (Fungi-Ascomycetes). Darwiniana 16:461–510.
   Google Scholar
• ———. 1991. Review of recent advances in the knowledge of the Cyttariales. Systema Ascomycetum 10:69–78.
   Google Scholar
• ———, Lederkremer RM. 1989. Los hongos andinopatagonicos del genero Cyttaria. Sus hidratos de carbono. Cienc Invest 43:4–13.
   Google Scholar
• ———, Minter DW. 2004a. Cyttaria berteroi. IMI Descr Fungi Bacter 160:1591.
   Google Scholar
• ———, ———. 2004b. Cyttaria darwinii. IMI Descr Fungi Bacter 160:1592.
   Google Scholar
• ———, ———. 2004c. Cyttaria espinosae. IMI Descr Fungi Bacter 160:1593.
   Google Scholar
• ———, ———. 2004d. Cyttaria exigua. IMI Descr Fungi Bacter 160:1594.
   Google Scholar
• ———, ———. 2004e. Cyttaria hariotii. IMI Descr Fungi Bacter 160:1596.
   Google Scholar
• ———, ———. 2004f. Cyttaria hookeri. IMI Descr Fungi Bacter 160:1597.
   Google Scholar
• ———, ———. 2004g. Cyttaria johowii. IMI Descr Fungi Bacter 160:1598.
   Google Scholar
• ———, ———. 2004h. Cyttaria nigra. IMI Descr Fungi Bacter 160:1599.
   Google Scholar
• ———, ———, Romero AI, Barrera VA, Giaiotti AL, Messuti MI, Stecconi M. 2004. Checklist of the discomycetes (Fungi) of Patagonia, Tierra del Fuego and adjacent Antarctic areas. Darwiniana 42:63–164.
   Google Scholar
• Gernandt DS, Platt JL, Stone JK, Spatafora JW, Holst-Jensen A, Hamelin RC, Kohn LM. 2001. Phylogenetics of Helotiales and Rhytismatales based on partial small subunit nuclear ribosomal DNA sequences. Mycologia 93:915–933.
   Google Scholar
• Heads M. 2006. Panbiogeography of Nothofagus (Nothofagaceae): analysis of the main species massings. J Biogeogr 33:1066–1075.
   Google Scholar
• Herbert DA. 1930. Cyttaria septentrionalis, a new fungus attacking Nothofagus moorei in Queensland and New South Wales. Proc R Soc Queensland 41:158–161.
   Google Scholar
• Hibbett DS. 1996. Phylogenetic evidence for horizontal transmission of group I introns in the nuclear ribomal DNA of mushroom-formining fungi. Mol Biol Evol 13: 903–917.
   Google Scholar
• ———, Binder M, Bischoff JF, Blackwell M, Cannon PF, Eriksson OE, Huhdorf S, James T, Kirk PM, Lücking R, Lumbsch T, Lutzoni F, Matheny PB, McLaughlin DJ, Powell MJ, Redhead S, Schoch CL, Spatafora JW, Stalpers JA, Vilgalys R, Aime MC, Aptroot A, Bauer R, Begerow D, Benny GL, Castlebury LA, Crous PW, Dai Y-C, Gams W, Geiser DM, Griffith GW, Gueidan C, Hawksworth DL, Hestmark G, Hosaka K, Humber RA, Hyde K, Ironside JE, Kõljalg U, Kurtzman CP, Larsson K-H, Lichtward R, Longcore J, Miadlikowska J, Miller A, Moncalvo J-M, Mozley-Standridge S, Oberwinkler F, Parmasto E, Reeb V, Rodgers JD, Roux C, Ryvarden L, Sampaio JP, Schüßler A, Sugiyama J, Thorn RG, Tibell L, Untereiner WA, Walker C, Wang Z, Weir A, Weiß M, White MM, Winka K, Yao Y-J, Zhang N. 2007. A higher-level phylogenetic classification of the Fungi. Mycol Res 111:509–547.
   Google Scholar
• Hill RS, Jordan GJ. 1993. The evolutionary history of Nothofagus (Nothofagaceae). Aust Syst Bot 6:111–126.
   Google Scholar
• ———, Read J. 1991. A revised infrageneric classification of Nothofagus (Fagaceae). Bot J Linn Soc 105:37–72.
   Google Scholar
• Holst-Jensen A, Kohn LM, Schumacher T. 1997. Nuclear rDNA phylogeny of the Sclerotiniaceae. Mycologia 89: 885–899.
   Google Scholar
• Huelsenbeck JP, Ronquist F. 2001. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754–755.
   Google Scholar
• Humphries CJ, Cox JM, Nielsen ES. 1986. Nothofagus and its parasites: a cladistic approach to co-evolution. In: Stone AR, Hawksworth DL, eds. Co-evolution and systematics. Oxford: Clarendon Press. p 55–76.
   Google Scholar
• Johnston PR, Park D. 2005. Chlorociboria (Fungi, Helotiales) in New Zealand. NZ J Bot 43:679–719.
   Google Scholar
• Jordan GJ, Hill RS. 1999. The phylogenetic affinities of Nothofagus (Nothofagaceae) leaf fossils based on combined molecular and morphological data. Int J Plant Sci 160:1177–1188.
   Google Scholar
• Kimbrough JW. 1970. Current trends in the classification of Discomycetes. Bot Rev 36:91–161.
   Google Scholar
• Knapp M, Stockler K, Havell D, Delsuc F, Sebastiani F, Lockhart PJ. 2005. Relaxed molecular clock provides evidence for long-distance dispersal of Nothofagus (southern beech). PLoS Biol 3:38–43.
   Google Scholar
• Kobayasi Y. 1966. On the genus Cyttaria (2). Trans Mycol Soc Japan 7:118–132.
   Google Scholar
• Korf RP. 1973. Discomycetes and Tuberales. In: Ainsworth GC, Sparrow FK, Sussman AS, eds. The Fungi: an advanced treatise. New York: Academic Press. p 249–319.
   Google Scholar
• ———. 1983. Cyttaria (Cyttariales): co-evolution with Nothofagus, and evolutionary relationship to the Boedijnopezizeae (Pezizales, Sarcoscyphaceae). Aust J Bot, 77–87.
   Google Scholar
• Landvik S. 1996. Phylogenetic rDNA studies of discomycetes (Ascomycota) [Doctoral dissertation]. Umeå, Sweden: Department of Ecological Botany, Umeå Univ. 119 p.
   Google Scholar
• ———, Eriksson OE. 1994. Relationships of Tuber, Elaphomyces and Cyttaria (Ascomycotina), inferred from 18S rDNA studies. In: Hawksworth DL, ed. Ascomycete systematics: problems and perspectives in the nineties. New York: NATO Scientific Affairs Division. p 225–231.
   Google Scholar
• ———, Kristiansen R, Schumacher T. 1998. Phylogenetic and structural studies in the Thelebolaceae (Ascomycota). Mycoscience 39:49–56.
   Google Scholar
• Li KN, Rouse DI, German TL. 1994. PCR primers that allow intergeneric differentiation of ascomycetes and their application to Verticillium spp. Appl Environ Microbiol 60:4324–4331.
   Google Scholar
• Liu YJ, Whelen S, Hall BD. 1999. Phylogenetic relationships among ascomycetes: evidence from an RNA polymerase II subunit. Mol Biol Evol 16:1799–1808.
   Google Scholar
• Lloyd CG. 1917. The genus Cyttaria. Mycol Notes Lloyd Libr Mus 48:673.
   Google Scholar
• Lumbsch HT, Huhndorf SM. 2007. Outline of Ascomycota 2007. Myconet 13:1–58.
   Google Scholar
• Luttrell ES. 1951. Taxonomy of the pyrenomycetes. Columbia: Curators Univ. Missouri Herbarium. 120 p.
   Google Scholar
• Lutzoni F, Kauff F, Cox CJ, McLaughlin D, Celio G, Dentinger B, Padamsee M, Hibbett D, James TY, Baloch E, Grube M, Reeb V, Hofstetter V, Schoch C, Arnold AE, Miadlikowska J, Spatafora J, Johnson D, Hambleton S, Crockett M, Shoemaker R, Sung G-H, Luecking R, Lumbsch T, O’Donnell K, Binder M, Diederich P, Ertz D, Gueidan C, Hansen K, Harris RC, Hosaka K, Lim Y-W, Matheny B, Nishida H, Pfister D, Rogers J, Rossman A, Schmitt I, Sipman H, Stone J, Sugiyama J, Yahr R, Vilgalys R. 2004. Assembling the Fungal Tree of :ife: progress, classification and evolution of subcellular traits. Am J Bot 91:1446–1480.
   Google Scholar
• Maddison DR, Maddison WP. 1996. MacClade 4: analysis of phylogeny and character evolution,. Version 4.07. Sunderland, Massachusetts: Sinauer Associates.
   Google Scholar
• Marvanová L, Landvik S, Fisher PJ, Moss ST, Ainsworth AM. 2002. A new fungus with arthroconidia from foam. Nova Hedwig 75:255–269.
   Google Scholar
• McKenzie EHC, Buchanan PK, Johnston PR. 2000. Checklist of fungi on Nothofagus species in New Zealand. NZ J Bot 38:635–720.
   Google Scholar
• Mengoni TP. 1986. El aparato apical del asco de Cyttaria harioti (Ascomycetes-Cyttariales) con microscopía fotónica y electronica. Bol Soc Argent Bot 24:393–401.
   Google Scholar
• ———. 1989. Considerationes acerca del modo de fecundación en Cyttaria (Ascomycotina-Cyttariales). Bol Soc Argent Bot 26:7–12.
   Google Scholar
• Minter DW, Cannon PF, Peredo HL. 1987. South American species of Cyttaria, a remarkable and beautiful group of edible ascomycetes. Mycologist 21:7–11.
   Google Scholar
• ———, Gamundí IJ. 2004a. Cyttaria gunnii. IMI Descr Fungi Bacter 160:1595.
   Google Scholar
• ———, ———. 2004b. Cyttaria pallida. IMI Descr Fungi Bacter 160:1600.
   Google Scholar
• Montagne C. 1840. Second centurie de plantes cellulaires exoiques nouvelles, décades VI, VII et VIII. Ann Sci Nat Bot Ser 2 14:321–350.
   Google Scholar
• Mori Y, Sato Y, Takamatsu S. 2000. Molecular phylogeny and radiation time of Erysiphales inferred from the nuclear ribosomal DNA sequences. Mycoscience 41:437–447.
   Google Scholar
• Oliva EM, Cirelli AF, Lederkremer RM. 1986. Chemical composition of the cell wall of the tree fungus Cyttaria harioti. Exp Mycol 10:150–156.
   Google Scholar
• Palm BT. 1932. On Cyttaria Berk. and Cyttariella n. gen. Ann Mycol 38:405–420.
   Google Scholar
• Paulin AE, Harrington TC. 2000. Phylogenetic placement of anamorphic species of Chalara among Ceratocystis species and other ascomycetes. Stud Mycol 45:209–222.
   Google Scholar
• Peterson KR, Pfister DH, Bell CD. 2010. Cophylogeny and biogeography of the fungal parasite Cyttaria and its host Nothofagus, the southern beech. Mycologia 102:1417–1425.
   Google Scholar
• Pfister DH, LoBuglio KF. 2009. Placement of Medeolaria farlowii in the Leotiomycetes, and comments on sampling within the class. Mycol Prog published online, DOI 10.1007/s11557-009-0644-y:8p.
   Google Scholar
• Platt J. 2000. Lichens, earth tongues and endophytes: evolutionary patterns inferred from phylogenetic analyses of multiple loci [Doctoral dissertation]. Corvallis, Oregon: Oregon State Univ. 177 p.
   Google Scholar
• Rawlings GB. 1956. Australasian Cyttariaceae. Trans R Soc NZ 84:19–28.
   Google Scholar
• Rehner SA, Buckley E. 2005. A Beauveria phylogeny inferred from nuclear ITS and EF1-alpha sequences: evidence for cryptic diversification and links to Cordyceps teleomorphs. Mycologia 97:84–98.
   Google Scholar
• Rifai MA. 1968. The Australasian Pezizales in the herbarium of the Royal Botanic Gardens, Kew. Verh Kon Ned Akad Wetensch Afd Natuurk Tweede Sect 57(3):1–295.
   Google Scholar
• ———. 1977. Two little-known fungi parasitizing Ustilina deusta. Kew Bull 31:723–729.
   Google Scholar
• Rossman AY, Aime MC, Farr DF, Castlebury LA, Peterson KR, Leahy R. 2004. The coelomycetous genera Chaetomella and Pilidium represent a newly discovered lineage of inoperculate discomycetes. Mycol Prog 3:275–290.
   Google Scholar
• Saccardo PA. 1889. Sylloge Discomycetum et Phymatosphaeriacearum. Sylloge Fungorum 8:1–1143.
   Google Scholar
• Santesson R. 1945. Cyttaria, a genus of inoperculate discomycetes. Sven Bot Tidskr 39:319–345.
   Google Scholar
• Schoch CL, Sung G-H, Lopez-Giraldez F, Townsend JP, Miadlikowska J, Hofstetter V, Robbertse B, Matheny PB, Kauff F, Wang Z, Gueidan C, Andrie RM, Trippe K, Ciufetti LM, Wynns A, Fraker E, Hodkinson BP, Bonito G, Groenewald JZ, Arzanlou M, de Hoog GS, Crous PW, Hewitt D, Pfister DH, Peterson K, Gryzenhout M, Wingfield MJ, Aptroot A, Suh S-O, Blackwell M, Hillis DM, Griffith GW, Castlebury LA, Rossman AY, Lumbsch HT, Lucking R, Budel B, Rauhut A, Diederich P, Ertz D, Geiser DM, Hosaka K, Inderbitzin P, Kohlmeyer J, Volkmann-Kohlmeyer B, Mostert L, O’Donnell K, Sipman H, Rogers JD, Shoemaker RA, Sugiyama J, Summerbell RC, Untereiner W, Johnston PR, Stenroos S, Zuccaro A, Dyer PS, Crittenden PD, Cole MS, Hansen K, Trappe JM, Yahr R, Lutzoni F, Spatafora JW. 2009. The Ascomycota Tree of Life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits. Syst Biol 58:224–239.
   Google Scholar
• Schröter J, Lindau G. 1897. Pezizineae. In: Engler A, Prantl K, eds. Die naturlichen pfanzenfamilien I (1). Leipzig: Wilhelm Engelmann. p 173–243.
   Google Scholar
• Setoguchi H. 2005. Co-evolution of Nothofagus plants and the ascomycete Cyttaria spp. with the Gondwanaland breakup. In: Sugiyama J, ed. Diversity and evolution of fungi, bacteria and viruses. Tokyo: Shokabo Publishing. p 155–156 (In Japanese).
   Google Scholar
• Shear CL, Dodge BO. 1921. The life history and identity of Patellina fragariae, Lepthothyrium macrothecium and Peziza oenotherae. Mycologia 13:134–170.
   Google Scholar
• Spooner BM, Trigaux G. 1985. A new Encoelia (Helotiales) from Prunus spinosa in France. Trans Br Mycol Soc 85: 547–552.
   Google Scholar
• Sugiyama M, Ohara A, Mikawa T. 1999. Molecular phylogeny of onygenalean fungi based on small subunit ribosomal DNA (SSU rDNA) sequences. Mycoscience 40:251–258.
   Google Scholar
• Swenson U, Backlund A, McLoughlin S, Hill RS. 2001. Nothofagus biogeography revisited with special emphasis on the enigmatic distribution of subgenus Brassospora in New Caledonia. Cladistics 17:28–47.
   Google Scholar
• Swofford DL. 2002. PAUP*: phylogenetic analysis using parsimony (*and other methods). Version 4.0b10. Sunderland, Massachusetts: Sinauer Associates.
   Google Scholar
• Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876–4882.
   Google Scholar
• Vilgalys R, Hester M. 1990. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol 172:4238–4246.
   Google Scholar
• Wang Z, Binder M, Schoch C, Johnston PR, Spatafora JW, Hibbett DS. 2006a. Evolution of helotialean fungi (Helotiomycetes, Pezizomycotina): a nuclear rDNA phylogeny. Mol Phylogenet Evol 41:295–312.
   Google Scholar
• ———, Johnston PR, Takamatsu S, Spatafora JW, Hibbett DS. 2006b. Toward a phylogenetic classification of the Leotiomycetes based on rDNA data. Mycologia 98: 1065–1075.
   Google Scholar
• White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols. San Diego: Academic Press. p 315–322.
   Google Scholar
• Wiens JJ. 1998. Does adding characters with missing data increase or decrease phylogenetic accuracy? Syst Biol 47:625–640.
   Google Scholar
• ———. 2001. Character analysis in morphological phylogenetics: problems and solutions. Syst Biol 50:689–699.
   Google Scholar
• ———. 2003. Missing data, incomplete taxa and phylogenetic accuracy. Syst Biol 52:528–538.
   Google Scholar
• Wilson JM. 1937. The structure of galls formed by Cyttaria septentrionalis on Fagus moorei. Proc Linn Soc NSW 62: 1–8.
   Google Scholar
• Winka K. 2000. Phylogenetic relationships within the Ascomycota based on 18S rDNA sequences [Doctoral dissertation]. Umeå, Sweden: Umeå Univ. 91 p.
   Google Scholar
• Zhuang WY. 1988. Studies on some discomycete genera with an ionomidotic reaction: Ionomidotis, Poloniodiscus, Cordierites, Phyllomyces and Ameghiniella. Mycotaxon 31:261–298.
   Google Scholar
• ———, Yu ZH, Wu WP, Langue C, Fouret N. 2000. Preliminary notes on phylogenetic relationships in the Encoelioideae inferred from 18S rDNA sequences. Mycosystema 19:478–484.
   Google Scholar