Phylogenetic placement of the ectomycorrhizal genus Cenococcum in Gloniaceae (Dothideomycetes)

Literature cited

• BarrME. 1987. Prodromus to class Loculoascomycetes. Amherst, Massachusetts: M.E. Barr Bigelow. 168 p.
   Google Scholar
• BerbeeML. 1996. Loculoascomycete origins and evolution of filamentous ascomycete morphology from 18S rRNA gene sequence data. Mol Biol Evol 13:462–470.
   PubMed Web of Science ®Google Scholar
• BinderMHibbettDS. 2006. Molecular systematics and biological diversification of Boletales. Mycologia 98: 971–981, 10.3852/mycologia.98.6.971
   PubMed Web of Science ®Google Scholar
• BoehmEWAMugambiGKMillerANHuhndorfSMMarincowitzSSpataforaJWSchochCL. 2009a. A molecular phylogenetic reappraisal of the Hysteriaceae, Mytilinidiaceae and Gloniaceae (Pleosporomycetidae, Dothideomycetes) with keys to world species. Stud Mycol 64:49–84, 10.3114/sim.2009.64.03
   Google Scholar
• BoehmEWASchochCLSpataforaJW. 2009b. On the evolution of the Hysteriaceae and Mytilinidiaceae (Pleosporomycetidae, Dothideomycetes, Ascomycota) using four nuclear genes. Mycol Res 113:461–479, 10.1016/j.mycres.2008.12.001
   PubMed Web of Science ®Google Scholar
• CastresanaJ. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17:540–552.
   PubMed Web of Science ®Google Scholar
• DouhanGWRizzoDM. 2005. Phylogenetic divergence in a local population of the ectomycorrhizal fungus Cenococcum geophilum. New Phytol 166:263–271, 10.1111/j.1469-8137.2004.01305.x
   PubMed Web of Science ®Google Scholar
• DouhanGWHurynKLDouhanLI. 2007a. Significant diversity and potential problems associated with inferring population structure within the Cenococcum geophilum species complex. Mycologia 99:812–819, 10.3852/mycologia.99.6.812
   Web of Science ®Google Scholar
• DouhanGWMartinDPRizzoDM. 2007b. Using the putative asexual fungus Cenococcum geophilum as a model to test how species concepts influence recombination analyses using sequence data from multiple loci. Cur Gen 52: 191–201, 10.1007/s00294-007-0150-1
   Google Scholar
• EdgarRC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucl Acids Res 32:1792–1797, 10.1093/nar/gkh340
   PubMed Web of Science ®Google Scholar
• Fernández-ToiránLMÁguedaB. 2007. Fruit bodies of Cenococcum geophilum. Mycotaxon 100:109–114.
   Google Scholar
• GeiserDMGueidanCMiadlikowskaJLutzoniFKauffFHofstetterVFrakerESchochCLTibellLUntereinerWAAptrootA. 2006. Eurotiomycetes: Eurotiomycetidae and Chaetothyriomycetidae. Mycologia 98:1053–1064, 10.3852/mycologia.98.6.1053
   PubMed Web of Science ®Google Scholar
• HansenKPfisterDH. 2006. Systematics of the Pezizomycetes—the operculate discomycetes. Mycologia 98:1029–1040, 10.3852/mycologia.98.6.1029
   PubMed Web of Science ®Google Scholar
• HibbettDSBinderMBischoffJFBlackwellMCannonPFErikssonOEHuhndorfSJamesTYKirkPMLückingRLumbschHTLutzoniFMathenyPBMcLaughlinDJPowellMJRedheadSSchochCLSpataforaJWStalpersJAVilgalysRAimeMCAptrootABauerRBegerowDBennyGLCastleburyLACrousPWDaiY-CGamsWGeiserDMGriffithGWGueidanCHawksworthDLHestmarkGHosakaKHumberRAHydeKDIronsideJEKoljagUKurtzmanCPLarssonK-HLichtwardtRLongcoreJMiadlikowskaJMillerAMoncalvoJ-MMozley-StandridgeSOberwinklerFParmastoEReebVRogersJDRouxCRyvardenLSampaioJPSchußlerASugiyamaJThornRGTibellLUntereinerWAWalkerCWangZWeirAWeissMWhiteMMWinkaKYaoY-JZhangN. 2007. A higher-level phylogenetic classification of the Fungi. Mycol Res 111:509–547, 10.1016/j.mycres.2007.03.004
   PubMed Web of Science ®Google Scholar
• JanyJLGarbayeJMartinF. 2002. Cenococcum geophilum populations show a high degree of genetic diversity in beech forests. New Phytol 154:651–659, 10.1046/j.1469-8137.2002.00408.x
   PubMed Web of Science ®Google Scholar
• LilleskovEABrunsTD. 2005. Spore dispersal of a resupinate ectomycorrhizal fungus, Tomentella sublilacina, via soil food webs. Mycologia 97:762–769, 10.3852/mycologia.97.4.762
   Web of Science ®Google Scholar
• LiuYJHallBD. 2004. Body plan evolution of ascomycetes, as inferred from an RNA polymerase II phylogeny. Proc Natl Acad Sci USA 101:4507–4512, 10.1073/pnas.0400938101
   PubMedGoogle Scholar
• LoBuglioKF. 1999. Ectomycorrhizal fungi: key genera in profile. CairneyJWGChambersSM, eds. Cenococcum. Berlin: Springer-Verlag. p 287–309.
   Google Scholar
• LoBuglioKFBerbeeMLTaylorJW. 1996. Phylogenetic origins of the asexual mycorrhizal symbiont Cenococcum geophilum Fr. and other mycorrhizal fungi among the ascomycetes. Mol Phylogen Evol 6:287–294, 10.1006/mpev.1996.0077
   Web of Science ®Google Scholar
• LoBuglioKFTaylorJW. 2002. Recombination and genetic differentiation in the mycorrhizal fungus Cenococcum geophilum Fr. Mycologia 94:772–280, 10.2307/3761692
   PubMed Web of Science ®Google Scholar
• LutzoniFKauffFCoxCJMcLaughlinDCelioGDentingerBPadamseeMHibbettDSJamesTYBalochEGrubeMReebVHofstetterVSchochCLArnoldAEMiadlikowskaJSpataforaJWJohnsonDHambletonSCrockettMShoemakerRSungG-HLückingRLumbschTO’DonnellKBinderMDiederichPErtzDGueidanCHansenKHarrisRCHosakaKLimY-WMathenyBNishidaHPfisterDHRogersJRossmanAYSchmittISipmanHStoneJSugiyamaJYahrRVilgalysR. 2004. Assembling the fungal tree of life: progress, classification and evolution of subcellular traits. Am J Bot 91:1446–1480, 10.3732/ajb.91.10.1446
   PubMed Web of Science ®Google Scholar
• MassicotteHBTrappeJMPetersonRLMelvilleLH. 1992. Studies on Cenococcum geophilum II. Sclerotium morphology, germination and formation in pure culture and growth pouches. Can J Bot 70: 125–132, 10.1139/b92-017
   Google Scholar
• MathenyPBWangZBinderMCurtisJMLimYMNilssonRHHughesKWHofstetterVAmmiratiJFSchochCLLangerGEMcLaughlinDJWilsonAWFrøslevTGeZWKerriganRWSlotJCVellingaECLiangZLBaroniTJFischerMHosakaKMatsuuraKSeidlMTVauraJHibbettDS. 2007. Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi). Mol Phylogenet Evol 43:430–451, 10.1016/j.ympev.2006.08.024
   PubMed Web of Science ®Google Scholar
• NelsenMPLückingRGrubeMMbatchouJSMuggiaLRivas PlataELumbschHT. 2009. Unraveling the phylogenetic relationships of lichenised fungi in Dothideomyceta. Stud Mycol 64:135–144, 10.3114/sim.2009.64.07
   PubMed Web of Science ®Google Scholar
• O’GormanCMFullerHTDyerPS. 2009. Discovery of a sexual cycle in the opportunistic fungal pathogen Aspergillus fumigatus. Nature 457:471–474, 10.1038/nature07528
   PubMed Web of Science ®Google Scholar
• RuibalCGueidanCSelbmannLGorbushinaAACrousPWGroenewaldJZMuggiaLGrubeMIsolaDSchochCLStaleyJTLutzoniFde HoogGS. 2009. Phylogeny of rock-inhabiting fungi related to Dothideomycetes. Stud Mycol 64:123–133, 10.3114/sim.2009.64.06
   PubMed Web of Science ®Google Scholar
• SchochCLShoemakerRASeifertKAHambletonSSpataforaJWCrousPW. 2006. A multigene phylogeny of the Dothideomycetes using four nuclear loci. Mycologia 64:1043–1054.
   Google Scholar
• SchochCLSungG-HLópez-GiráldezFTownsendJPMiadlikowskaJHofstetterVRobbertseBMathenyPBKauffFWangZAndrieRTrippeKCiuffettiLAmtoftAFrakerEHodkinsonBPBonitoGLutzoniFGroenewaldJZArzanlouMde HoogSCrousPWHewittDPfisterDHPetersonKGryzenhoutMWingfieldMJAptrootASuhS-OBlackwellMHillisDMGriffithGCastleburyLRossmanALumbschHTLückingRDiederichPErtzDGeiserDHosakaKInderbitzinPKohlmeyerJVolkmann-KohlmeyerBMostertLO’DonnellKRogersJShoemakerRSugiyamaJSummerbellRUntereinerWJohnstonPStenroosSZuccaroADyerPCrittendenPTrappeJMSpataforaJW. 2009a. The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits. Syst Biol 58:224–239, 10.1093/sysbio/syp020
   PubMed Web of Science ®Google Scholar
• SchochCLCrousPWGroenewaldJZBoehmEWABurgessTIde GruyterJde HoogGSDixonLJGrubeMGueidanCHaradaYHatakeyamaSHirayamaKHosoyaTHuhndorfSMHydeKDJonesEBGKohlmeyerEBGKruysÅLückingRLumbschHTMarvanováLMbatchouJSMcVayAHMillerANMugambiGKMuggiaLNelsenMPNelsonPOwensbyCAPhillipsAJLPhongpaichitSPointingSBPujade-RenaudVRajaHARivas PlataERobbertseBRuibalCSakayarojJSanoTSelbmannLShearerCAShirouzuTSlippersBSuetrongSTanakaKVolkmann-KohlmeyerBWingfieldMJWoodARWoudenbergJHCYonezawaHZhangYSpataforaJW. 2009b. A class-wide phylogenetic assessment of Dothideomycetes. Stud Mycol 64:1–15, 10.3114/sim.2009.64.01
   PubMed Web of Science ®Google Scholar
• StamatakisA. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688– 2690, 10.1093/bioinformatics/btl446
   PubMed Web of Science ®Google Scholar
• SuetrongSSchochCLSpataforaJWKohlmeyerJVolkmann-KohlmeyerBSakayarojJPhongpaichitSTanakaKHirayamaKJonesEBG. 2009. Molecular systematics of the marine Dothideomycetes. Stud Mycol 64:155–173, 10.3114/sim.2009.64.09
   PubMed Web of Science ®Google Scholar
• TedersooLMayTWSmithME. 2010. Ectomycorrhizal lifestyle in fungi: global diversity, distribution and evolution of phylogenetic lineages. Mycorrhiza 20: 217–263, 10.1007/s00572-009-0274-x
   PubMed Web of Science ®Google Scholar
• TrappeJM. 1964. Mycorrhizal hosts and distribution of Cenococcum graniforme. Lloydia 27:100–106.
   Google Scholar
• TrappeJM. 1969. Studies on Cenococcum graniforme I. An efficient method for isolation from sclerotia. Can J Bot 47:1389–1390, 10.1139/b69-198
   Google Scholar
• TrappeJM. 1971. Mycorrhiza-forming Ascomycetes. In: HacskayloE, ed. Mycorrhizae. Washington, D.C.: USDA Forest Service. p 19–37.
   Google Scholar
• TsuiCKMBerbeeML. 2006. Phylogenetic relationships and convergence of helicosporous fungi inferred from ribosomal DNA sequences. Mol Phylogenet Evol 39: 587–597, 10.1016/j.ympev.2006.01.025
   Google Scholar
• WuBYNaraKHogetsuT. 2005. Genetic structure of Cenococcum geophilum populations in primary successional volcanic deserts on Mount Fuji as revealed by microsatellite markers. New Phytol 165:285–293, 10.1111/j.1469-8137.2004.01221.x
   Google Scholar