577
Views
36
CrossRef citations to date
0
Altmetric
Original Articles

A systematic, morphological and ecological overview of the Clavariaceae (Agaricales)

, , &
Pages 896-911 | Received 03 Mar 2012, Accepted 05 Dec 2012, Published online: 20 Jan 2017

Literature cited

  • AgererRChristanJMayrCHobbieE. 2012. Isotopic signatures and trophic status of Ramaria. Mycol Prog 11:47–59 , doi:10.1007/s11557-010-0726-x
  • AltschulSFGishWMillerWMyersEWLipmanDJ. 1990. Basic local alignment search tool. J Mol Biol 215:403–410.
  • ArnoldsE. 1986. Notes on Hygrophoraceae IX. Camarophyllopsis Herink, an older name for Hygrotrama Sing. Mycotaxon 25:639–644.
  • BaldocchiDDBowlingDR. 2003. Modeling the discrimination of 13CO2 above and within a temperate broadleaf forest canopy on hourly to seasonal time scales. Plant, Cell, Environ 26:231–244 , doi:10.1046/j.1365-3040.2003.00953.x
  • BensonDAKarsch-MizrachiILipmanDJOstellJSayersEW. 2011. GenBank. Nucleic Acids Res 39(suppl 1):D32–D37 , doi:10.1093/nar/gkq1079
  • BergeroRPerottoSGirlandaMVidanoGLuppiAM. 2000. Ericoid mycorrhizal fungi are common root associates of a Mediterranean ectomycorrhizal plant (Quercus Ilex). Mol Ecol 9:1639–1649 , doi:10.1046/j.1365-294x.2000.01059.x
  • BinderMLarssonK-HMathenyPBHibbetDS. 2010. Amylocorticiales ord. nov. and Jaapiales ord. nov.: early-diverging clades of Agaricomycetidae dominated by corticioid forms. Mycologia 102: 865– 880 , doi:10.3852/09-288
  • BoertmannD. 2002. Index Hygrocybearum. A catalogue to names and potential names in tribus Hygrocybeae Kühner (Tricholomatales, Fungi). Biblioth Mycol 192: 1–168.
  • BowlingDRPatakiDERandersonJT. 2008. Carbon isotopes in terrestrial ecosystem pools and CO2 fluxes. New Phytol 178:24–40 , doi:10.1111/j.1469-8137.2007.02342.x
  • BrearleyFQScholesJDSeeLS. 2005. Nitrogen nutrition and isotopic discrimination in tropical ectomycorrhizal fungi. Res Microbiol 156:184–190 , doi:10.1016/j.resmic.2004.09.003
  • BurkeDJMartinKJRygiewiczPTTopaMA. 2005. Ectomycorrhizal fungi identification in single and pooled root samples: terminal restriction fragment length polymorphism (TRFLP) and morphotyping compared. Soil Biol Biochem 37: 1683– 1694 , doi:10.1016/j.soilbio.2005.01.028
  • BurkeDJMartinKJRygiewiczPTTopaMA. 2006. Relative abundance of ectomycorrhizas in a managed loblolly pine (Pinus taeda) genetics plantation as determined through terminal restriction fragment length polymorphism profiles. Can J Bot 84:924–932 , doi:10.1139/b06-046
  • CornerEJH. 1950. A monograph of Clavaria and allied genera. Ann Bot Mem 1:1–750.
  • CornerEJH. 1970. A monograph of Clavaria and allied genera. (Suppl.) Beihefte Zur Nova Hedwigia 33:1–299.
  • CraineJMElmoreAJAidarMPMBustamanteMDawsonTEHobbieEAKahmenAMackMCMcLauchlanKKMichelsenANardotoGBPardoLHPeñuelasJReichPBSchuurEAGStockWDTemplerPHVirginiaRAWelkerJMWrightIJ. 2009. Global patterns of foliar nitrogen isotopes and their relationships with climate, mycorrhizal fungi, foliar nutrient concentrations and nitrogen availability. New Phytol 183:980–992 , doi:10.1111/j.1469-8137.2009.02917.x
  • DentingerBTMMcLaughilnDJ. 2006. Reconstructing the Clavariaceae using nuclear large subunit rDNA sequences and a new genus segregated from Clavaria. Mycologia 98:946–962 , doi:10.3852/mycologia.98.5.746
  • DijkstraPLaVioletteCMCoyleJSDoucettRRSchwartzEHartSCHungateBA. 2008. 15N enrichment as an integrator of the effects of C and N on microbial metabolism and ecosystem function. Ecol Lett 11:1–9 , doi:10.1111/j.1461-0248.2008.01154.x
  • DoddJL. 1972. The genus Clavicorona. Mycologia 64:737–773 , doi:10.2307/3757931
  • DonkMA. 1964. A conspectus of the families of Aphyllophorales. Persoonia 3:199–324.
  • EnglanderLHullRJ. 1980. Reciprocal transfer of nutrients between ericaceous plants and a Clavaria sp. New Phytol 84:661–667 , doi:10.1111/j.1469-8137.1980.tb04779.x
  • García-SandovalRCifuentesJDe LunaEEstrada-TorresAVillegasM. 2005. A phylogeny of Ramariopsis and allied taxa. Mycotaxon 94:265–292.
  • GebauerGDietrichP. 1993. Nitrogen isotope ratios in different compartments of a mixed stand of spruce, larch and beech trees and of understorey vegetation including fungi. Isotopes Environ Health Stud 29:35–44 , doi:10.1080/10256019308046133
  • GleixnerGDanierHJWernerRASchmidtHL. 1993. Correlations between the 13 C content of primary and secondary plant products in different cell compartments and that in decomposing basidiomycetes. Plant Physiol 102:1287–1290.
  • GriffithGWEastonGLJonesAW. 2002. Ecology and diversity of waxcaps (Hygrocybe spp.) fungi. Bot J Scot 54:7–22 , doi:10.1080/03746600208685025
  • HarrisonKA. 1972. Pistillaria fusiformis. Mycologia 64:208–212 , doi:10.2307/3758029
  • HeathTAHedtkeSMHillisDM. 2008. Taxon sampling and the accuracy of phylogenetic analyses. J Syst Evol 46:239–257.
  • HelserLRSmithAH. 1963. North American species of Hygrophorus. Knoxville: Univ. Tennessee Press. 416 p.
  • HennMRChapelaIH. 2001. Ecophysiology of 13C and 15N isotopic fractionation in forest fungi and the roots of the saprotrophic-mycorrhizal divide. Oecologia 128: 480–487 , doi:10.1007/s004420100680
  • HjortstamKLarssonK-H. 1995. A new species of Hyphodontiella. Mycotaxon 56:473–478.
  • HobbieEAAgererR. 2009. Nitrogen isotopes in ectomycorrhizal sporocarps correspond to belowground exploration types. Plant Soil 327:71–83 , doi:10.1007/s11104-009-0032-z
  • HobbieEAColpaertJVWhiteMWOuimetteAPMackoSA. 2008. Nitrogen form, availability, and mycorrhizal colonization affect biomass and nitrogen isotope patterns in Pinus sylvestris. Plant Soil 310:121–136 , doi:10.1007/s11104-008-9637-x
  • HobbieEAJumpponenATrappeJ. 2005. Foliar and fungal 15N; 14N ratios reflect development of mycorrhizae and nitrogen supply during primary succession: testing analytical models. Oecologia 146:258–268 , doi:10.1007/s00442-005-0208-z
  • HobbieEAMackoSAShugartHH. 1999. Insights into nitrogen and carbon dynamics of ectomycorrhizal and saprotrophic fungi from isotopic evidence. Oecologia 118:353–360 , doi:10.1007/s004420050736
  • HobbieJEHobbieEA. 2006. 15N in symbiotic fungi and plants estimates nitrogen and carbon flux rates in Arctic tundra. Ecology 87:816–822 , doi:10.1890/0012-9658(2006)87[816:NISFAP]2.0.CO;2
  • HögbergPHögbergMNQuistMEEkbladANasholmT. 1999a. Nitrogen isotope fractionation during nitrogen uptake by ectomycorrhizal and non-mycorrhizal Pinus sylvestris. New Phytol 142:569–576 , doi:10.1046/j.1469-8137.1999.00404.x
  • HögbergPPlamboeckAHTaylorAFSFranssonPMA. 1999b. Natural 13C abundance reveals trophic status of fungi and host-origin of carbon in mycorrhizal fungi in mixed forests. PNAS, USA 96:8534–8539 , doi:10.1073/pnas.96.15.8534
  • JamesonA. 1973. Characterization of the pigments of Clavulinopsis fusiformis [master’s thesis]. Knoxville: Univ. Tennessee Press. 51 p.
  • JülichW. 1981. Higher taxa of Basidiomycetes. Bibl Mycol 85:1–485.
  • JülichW. 1985. Bemerkungen zu Clavulinopsis und Ramariopsis. Intern J Mycol Lichenol 2:119–122.
  • KirkPMCannonPFMinterDWStaplersJA. 2008. Dictionary of the Fungi. 10th ed. Wallingford, UK: CAB International. 784 p.
  • KohzuATateishiTYamadaAKobaKWadaE. 2000. Nitrogen isotope fractionation during nitrogen transport from ectomycorrhizal fungi, Suillus granulatus, to the host plant, Pinus densiflora. Jap Soc Soil Sci Plant Nutrition 46:733–739 , doi:10.1080/00380768.2000.10409138
  • LarkinMABlackshieldsGBrownNPChennaRMcGettiganPAMcWilliamHValentinFWallaceIMWilmALopezRThompsonJDGibsonTJHigginsDG. 2007. Clustal W and Clustal X. Version 2.0. Bioinformatics 23: 2947–2948 , doi:10.1093/bioinformatics/btm404
  • LarssonK-H. 2007. Re-thinking the classification of corticioid fungi. Mycol Res 111:1040–1063 , doi:10.1016/j.mycres.2007.08.001
  • LarssonK-HLæssøeTYorouNSRyvardenL. 2011. The phylogenetic position of Hydnodon and Scytinopogon. Mycological Society of American meeting, Fairbanks, Alaska, 2–5 Aug 2011 (abstract).
  • LarssonK-HLarssonEKõljalgU. 2004. High phylogenetic diversity among corticioid homobasidiomycetes. Mycol Res 108:983–1002 , doi:10.1017/S0953756204000851
  • LickeyEBHughesKWPetersenRH. 2003. Phylogenetic and taxonomic studies in Artomyces and Clavicorona (Homobasidiomycetes: Auriscalpiaceae). Sydowia 55: 118–254.
  • LilleskovEAHobbieEAFaheyTJ. 2002. Ectomycorrhizal fungal taxa differing in response to nitrogen deposition also differ in pure culture organic nitrogen use and natural abundance of nitrogen isotopes. New Phytol 154:219–231 , doi:10.1046/j.1469-8137.2002.00367.x
  • LindahlBDIhrmarkKBobergJTrumboreSEHogbergPStenlidJFinlayRD. 2007. Spatial separation of litter decomposition and mycorrhizal nitrogen uptake in a boreal forest. New Phytol 173:611–620 , doi:10.1111/j.1469-8137.2006.01936.x
  • MaddisonDRMaddisonWP. 2005. MacClade 4: analysis of phylogeny and character evolution. Version 4.08 for OS X. Sunderland, Massachusetts: Sinauer Associates.
  • MaddisonWPMaddisonDR. 2011. Mesquite 2.75: a modular system for evolutionary analysis. http://mesquiteproject.org
  • MarshalJDBrooksJRLajthaK. 2007. Sources of variation in the stable isotopic composition of plants. In: MichenerR, ed. Stable isotopes in ecology and environmental science. 2nd ed. Hoboken, New Jersey: Wiley-Blackwell Publishing. p 22–60.
  • MathenyPBCurtisJMHofstetterVAimeMCMoncalvoJMGeZWYangZLSlotJCAmmiratiJFBaroniTJBougherNLHughesKWLodgeDJKerriganRWSeidlMTAanenDKDeNitisMDanieleGDesjardinDEKroppBRNorvellLLParkerAVellingaECVilgalysRHibbettDS. 2006. Major clades of Agaricales: a multilocus phylogenetic overview. Mycologia 98:982–995 , doi:10.3852/mycologia.98.6.982
  • MathenyPBKroppBR. 2001. A revision of the Inocybe lanuginosa group and allied species in North America. Sydowia 53:93–139.
  • MayorJRSchuurEAGHenkelTW. 2009. Elucidating the nutritional dynamics of fungi using stable isotopes. Ecol Lett 12:171–183 , doi:10.1111/j.1461-0248.2008.01265.x
  • NilssonRHKristianssonERybergMLarssonKH. 2005. Approaching the taxonomic affiliation of unidentified sequences in public databases—an example from the mycorrhizal fungi. BMC Bioinformatics 6.
  • NilssonRHRybergMSjökvistEAbarenkovK. 2011. Rethinking taxon sampling in the light of environmental sequencing. Cladistics 27:197–203 , doi:10.1111/j.1096-0031.2010.00336.x
  • PeglerDNYoungTWK. 1985. Basidiospore structure in Ramariopsis (Clavariaceae). Trans Br Mycol Soc 84: 207–214 , doi:10.1016/S0007-1536(85)80071-1
  • PetersenRH. 1966. Notes on Clavarioid fungi V. Emendation and additions to Ramariopsis. Mycologia 58:201–207 , doi:10.2307/3756960
  • PetersenRH. 1967. Notes on Clavarioid fungi VII. Redefinition of the Clavaria vernalis-C. mucida complex. Am Midl Nat 77:205–221 , doi:10.2307/2423440
  • PetersenRH. 1978. Notes on Clavarioid fungi XV. Reorganization of Clavaria, Clavulinopsis and Ramariopsis. Mycologia 70:660–671 , doi:10.2307/3759402
  • PetersenRH. 1986. Notes on Clavarioid fungi XIX. Colored illustrations of selected taxa, with comments on Cantharellus. Nova Hedwigia 42:151–160.
  • PetersenRH. 1988. The clavarioid fungi of New Zealand. Wellington: DSIR Bull 236. 170 p.
  • PineEMHibbettDSDonoghueMJ. 1999. Phylogenetic relationships of cantharelloid and clavarioid Homobasidiomycetes based on mitochondrial and nuclear rDNA sequences. Mycologia 91:944–963 , doi:10.2307/3761626
  • PosadaD. 2008. jModelTest: Phylogenetic model averaging. Mol Biol Evol 25:1253–1256 , doi:10.1093/molbev/msn083
  • ReaC. 1922. British Basidiomycetaceae. A handbook of the larger British fungi. Cambridge, UL: Cambridge Univ. Press. 799 p.
  • ReadDJPerez-MorenoJ. 2002. Mycorrhizas and nutrient cycling in ecosystems—a journey toward relevance? New Phytol 157:475–492 , doi:10.1046/j.1469-8137.2003.00704.x
  • RinaldiACComandiniOKuyperTW. 2008. Ectomycorrhizal fungal diversity: separating the wheat from the chaff. Fungal Divers 33:1–45.
  • RybergMKristianssonESjökvistENilssonRH. 2009. An outlook on the fungal internal transcribed spacer sequences in GenBank and the introduction of a web-based tool for the exploration of fungal diversity. New Phytol 181:471–477 , doi:10.1111/j.1469-8137.2008.02667.x
  • RybergMNilssonRHKristianssonETopelMJacobssonSLarssonE. 2008. Mining metadata from unidentified ITS sequences in GenBank: a case study in Inocybe (Basidiomycota). BMC Evol Biol 8:50 , doi:10.1186/1471-2148-8-50
  • SeitzmanBHOuimetteAMixonRLHobbieEAHibbettDS. 2011. Conservation of biotrophy in Hygrophoraceae inferred from combined stable isotope and phylogenetic analyses. Mycologia 103:280–290 , doi:10.3852/10-195
  • SeviourRJWillingRRChilversGA. 1973. Basidiocarps associated with ericoid mycorrhizas. New Phytol 72: 381–385 , doi:10.1111/j.1469-8137.1973.tb02045.x
  • ShimodairaHHasegawaM. 1999. Multiple comparisons of log likelihoods with applications to phylogenetic inference. Mol Biol Evol 16:1114–1116 , doi:10.1093/oxfordjournals.molbev.a026201
  • StamatakisAHooverPRougemontJ. 2008. A rapid bootstrap algorithm for the RAxML web-servers. Syst Biol 75:758–771 , doi:10.1080/10635150802429642
  • StebbinsMERobbinsWJ. 1949. Mineral oil and preservation of fungus cultures. Mycologia 41:632–636 , doi:10.2307/3755019
  • TaylorJWTurnerETownsendJPDettmanJRJacobsonD. 2006. Eukaryotic microbes, species recognition and the geographic limits of species: examples from the kingdom Fungi. Philos Trans R Soc Lond B Biol Sci 361:1947–1963 , doi:10.1098/rstb.2006.1923
  • TedersooLMayTWSmithME. 2010. Ectomycorrhizal lifestyle in fungi: global biodiversity, distribution and evolution of phylogenetic lineages. Mycorrhiza 20:217–263 , doi:10.1007/s00572-009-0274-x
  • ThiersB. [continuously updated]. Index herbariorum: a global directory of public herbaria and associated staff. New York Botanical Garden’s virtual herbarium. http://sweetgum.nybg.org/ih/ ( accessed Oct 2012)
  • TrappeJM. 1962. Fungus associates of ectotrophic mycorrhizae. Bot Rev 28:538–606 , doi:10.1007/BF02868758
  • van OvereemC. 1923. Ueber Javanische Clavariaceae. Bull Jard Bot Buitenzorg III 5:254–280.
  • WhiteTJBrunsTDLeeSBTaylorJW. 1990. Amplification and direct sequencing of fungal ribosomal RNA Genes for phylogenetics. In: InnisNGelfandDSninskyJWhiteT, eds. PCR: protocols and applications—a laboratory manual. New York: Academic Press. p 315–322.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.