152
Views
2
CrossRef citations to date
0
Altmetric
Original Articles

A common new species of Inocybe in the Pacific Northwest with a diagnostic PDAB reaction

, &
Pages 436-446 | Received 04 May 2012, Accepted 23 Jul 2012, Published online: 20 Jan 2017

Literature cited

  • AmmiratiJFParkerADMathenyPB. 2007. Cleistocybe, a new genus of Agaricales. Mycoscience 48:282–289, 10.1007/s10267-007-0365-5
  • BaillyMFontyPLégerN. 1967. Le dosage de l’urée dans les liquides biologiques a l’aide du pardiméthylamino-benzaldéhyde. Ann Biol Clin 25:1221–1232.
  • BensonDAKarsch-MizrachiIClarkKLipmanDJOstellJSayersEW. 2012. GenBank. Nucleic Acids Res 40:D48–D53, 10.1093/nar/gkr1202
  • BidartondoMIet al. 2008. Preserving accuracy in GenBank. Science 319:1616, 10.1126/science.319.5870.1616a
  • BridgePDSpoonerBMRobertsPJPanchalG. 2003. On the unreliability of published DNA sequences. New Phytol 160:43–48, 10.1046/j.1469-8137.2003.00861.x
  • BrownJKSchinglerRHChaubalMGMaloneMH. 1973. A rapid screening procedure for some “street-drugs” by thin-layer chromatography II. Cocaine, heroin, local anesthetics and mixtures. J Chromatogr 87:211–214, 10.1016/S0021-9673(01)91535-3
  • CalatayudJMHernandezCM. 1991. Some observations on the spectrophotometric determination of nitrite using ergonovine-p-Dimethylaminobenzaldehyde. Microchem J 43:143–148, 10.1016/0026-265X(91)90009-E
  • CrippsCLLarssonEHorakE. 2010. Subgenus Mallocybe (Inocybe) in the Rocky Mountain alpine zone with molecular reference to European arctic-alpine material. North Am Fungi 5:97–126.
  • HartmannMLeeSHallamSJMohnWW. 2009. Bacterial, archaeal and eukaryal community structures throughout soil horizons of harvested and naturally disturbed forest stands. Environ Microbiol 11:3045–3062, 10.1111/j.1462-2920.2009.02008.x
  • HeimR. 1931. Le genre Inocybe précédé d’une introduction générale à l’étude des agarics ochrosporés. Paris: Paul Lechevalier & Fils. 431 p.
  • JacobssonS. 2008. Inocybe. In: KnudsenHVesterholtJ, eds. Funga nordica. Copenhagen: Nordsvamp. p 868–906.
  • JudgeBAmmiratiJFLincoffGTrestrailJHMathenyPB. 2010. Ingestion of a newly described North American mushroom species from Michigan resulting in chronic renal failure: Cortinarius orellanosus. Clin Toxicol 48: 545–549, 10.3109/15563650.2010.495346
  • KauffmanCH. 1924. Inocybe. North Am Flora 10:227–260.
  • KobayashiT. 2002. The taxonomic studies of the genus Inocybe. Beih Nova Hedwigia 124:1–246.
  • KobayashiT. 2009. Notes on the genus Inocybe of Japan IV. Species having metuloids collected from Hokkaido, Honshu and Kyushu. Mycoscience 50:203–211, 10.1007/s10267-008-0472-y
  • KokkonenKVaurasJ. 2012. Eleven new boreal species of Inocybe with nodulose spores. Mycol Prog 11:299–341, 10.1007/s11557-011-0783-9
  • KroppBRMatheny. 2004. Basidiospore homoplasy and variation in the Inocybe chelanensis group in North America. Mycologia 96:295–309, 10.2307/3762065
  • KroppBRMathenyNanagyulyanSG. 2010. Phylogenetic taxonomy of the Inocybe splendens group and evolution of supersection “Marginatae”. Mycologia 102:560–573, 10.3852/08-032
  • KühnerR. 1955. Compléments à la “Flore Analytique”. V) Inocybe leiosporés cystidiés: Espèces nouvelles ou critiques. Bull Soc Nat d’Oyonnax 9:3–95.
  • KuyperTW. 1986. A revision of the genus Inocybe in Europe I. Subgenus Inosperma and the smooth-spored species of subgenus Inocybe. Persoonia (Suppl.) 3:1–247.
  • LarkinMABlackshieldsGBrownNPChennaRMcGettiganPAMcWilliamHValentinFWallaceIMWilmALopezRThompsonJDGibsonTJHigginsDG. 2007. Clustal W and Clustal X 2.0. Bioinformatics 23:2947–2948, 10.1093/bioinformatics/btm404
  • LargentDL. 1977. The genus Leptonia on the Pacific Boast of the United States. Bibliotheca Mycol 55:1–286.
  • LarssonERybergMMoreauP-AMathiesenADJacobssonS. 2009. Taxonomy and evolutionary relationships within species of section Rimosae (Inocybe) based on ITS, LSU and mtSSU sequence data. Persoonia 23:86–98, 10.3767/003158509X475913
  • LennoxJW. 1979. Collybioid genera in the Pacific Northwest. Mycotaxon 9:117–231.
  • Libonati-BarnesS. 1981. Systematics of Tectella, Panellus, Hohenbuehelia and Resupinatus (Tricholomataceae) in the Pacific Northwest [doctoral dissertation]. Univ. Washington Press. 732 p.
  • MathenyPB. 2005. Improving phylogenetic inference of mushrooms using RPB1 and RPB2 sequences (Inocybe, Agaricales). Mol Phylogenet Evol 35:1–20, 10.1016/j.ympev.2004.11.014
  • MathenyPBCurtisJMHofstetterVAimeMCMoncalvoJ-MGeZ-WYangZ-LSlotJCAmmiratiJFBaroniTJBougherNLHughesKWLodgeDJKerriganRWSeidlMTAanenDKDeNitisMDanieleGMDesjardinDEKroppBRNorvellLLParkerAVellingaECVilgalysRHibbettDS. 2006. Major clades of Agaricales: a multilocus phylogenetic overview. Mycologia 98:982–995, 10.3852/mycologia.98.6.982
  • MathenyPBKroppBR. 2001. A revision of the Inocybe lanuginosa group and allied species in North America. Sydowia 53:93–139.
  • MathenyPBLiuYJAmmiratiJFHallBD. 2002. Using RPB1 sequences to improve phylogenetic inference among mushrooms (Inocybe, Agaricales). Am J Bot 89:688–698, 10.3732/ajb.89.4.688
  • Moënne-LoccozPPoirierJReumauxP. 1990. Fungorum rariorum icones coloratae, part 19: Inocybes critiquables et critiqués. Berlin: J. Cramer. 55 p. 8 pl.
  • Munsell Soil Color Charts. 1954, Baltimore, Maryland: Munsell Color Co.
  • NilssonRHRybergMKristianssonEAbarenkovKLarssonK-HKõljalgU. 2006. Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective. PLoS One 1:e59, 10.1371/journal.pone.0000059
  • NishidaF. 1989. Key to the species of Inocybe in California. Mycotaxon 34:181–196.
  • NorvellLLExeterRL. 2004. Ectomycorrhizal epigeous basidiomycetes diversity in Oregon Coast Range Pseudotsuga menziesii forests—preliminary observations. In: CrippsC, ed. Fungi in forest ecosystems: diversity, ecology and systematics. Memoirs NY Bot Garden 89:159–189.
  • OvreboCL. 1989. Tricholoma, subgenus Tricholoma, section Albidogrisea: North American species found principally in the Great Lakes region. Can J Bot 67:3134–3152, 10.1139/b89-393
  • PetersenRH. 1975. The southern Appalachian Mountains as a refugium for tropical basidiomycetes. In: ParkerBCRoaneMK, eds. The distributional history of the biota of the southern Appalachians IV. Algae and Fungi: biogeography, systematics and ecology. Proceedings of a symposium held 14–15 Apr 1975 at Virginia Polytechnic Institute and State University. p 287–295.
  • PosadaDCrandallKA. 1998. ModelTest: testing the model of DNA substitution. Bioinformatics 14:817–818, 10.1093/bioinformatics/14.9.817
  • RidgwayR. 1912. Color standards and nomenclature. Washington DC: Published by the author. 43 p. 53 pl.
  • RobbersJEBradyLRTylerVEJr. 1964. A chemical and chemotaxonomic evaluation of Inocybe species. Lloydia 27:192–202.
  • RonquistFHuelsenbeckJP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–1574, 10.1093/bioinformatics/btg180
  • RoyMYagameTYamatoMIwaseKHeinzCFaccioABonfantePSelosseMA. 2009. Ectomycorrhizal Inocybe species associate with the mycoheterotrophic orchid Epipogium aphyllum but not its asexual propagules. Ann Bot 104:595–610, 10.1093/aob/mcn269
  • RybergMNilssonRHKristianssonETopelMJacobssonSLarssonE. 2008. Mining metadata from unidentified ITS sequences in GenBank: a case study in Inocybe (Basidiomycota). BMC Evol Biol 8:50, 10.1186/1471-2148-8-50
  • SingerR. 1986. The Agaricales in modern taxonomy. Koenigstein, Germany: Koeltz Scientific Books. 981 p. 88 pl.
  • StamatakisA. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688–2690, 10.1093/bioinformatics/btl446
  • StanglJ. 1989. Die Gattung Inocybe in Bayern. Hoppea 46:5–388.
  • StuntzDE. 1940. The genus Inocybe in western Washington [doctoral dissertation]. Yale Univ. Press. 406 p.
  • ThiersB. [continuously updated]. Index herbarium: a global directory of public herbaria and associated staff. New York Botanical Garden’s Virtual Herbarium. http://sweetgum.nybg.org/ih/
  • VilgalysR. 2003. Taxonomic misidentification in public DNA databases. New Phytol 160:4–5, 10.1046/j.1469-8137.2003.00894.x
  • WatlingR. 1969. Chemical tests in agaricology. In: NorrisJRRibbonsDW, eds. Methods in microbiology. London: Academic Press. p 567–597.
  • WooB. 1993. Russula: key to the Pacific Northwest species. Seattle, Washington: Published by the author for the Pacific Northwest Key Council. 36 p.
  • ZhangZSchwartzSWagnerLMillerW. 2000. A greedy algorithm for aligning DNA sequences. J Comput Biol 7:203–214, 10.1089/10665270050081478

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.