Meredithblackwellia eburnea gen. et sp. nov., Kriegeriaceae fam. nov. and Kriegeriales ord. nov.—toward resolving higher-level classification in Microbotryomycetes

Literature cited

• AimeMCMathenyPBHenkDAFriedersEMNilssonRHPiepenbringMMcLaughlinDJSzaboLJBegerowDSampaioJPBauerRWeissMOberwinklerFHibbettDS. 2006. An overview of the higher level classification of Pucciniomycotina based on combined analyses of nuclear large and small subunit rDNA sequences. Mycologia 98:895–905, 10.3852/mycologia.98.6.896
   Google Scholar
• AimeMCToomeMMcLaughlinDJ. 2012. Pucciniomycotina. In: McLaughlinDJSpataforaJW, eds. Mycota. Vol. VII, 2nd ed. Systematics and evolution (In press).
   Google Scholar
• AmendASSeifertKABrunsTD. 2010. Quantifying microbial communities with 454 pyrosequencing: Does read abundance count? Mol Ecol 19:5555–5565, 10.1111/j.1365-294X.2010.04898.x
   PubMed Web of Science ®Google Scholar
• AndrewsJHHarrisRF. 2000. The ecology and biogeography of microorganisms on plant surfaces. Annu Rev Phytopathol 38:145–180, 10.1146/annurev.phyto.38.1.145
   PubMed Web of Science ®Google Scholar
• BauerRBegerowDOberwinklerFMarvanováL. 2003. Classicula: the teleomorph of Naiadella fluitans. Mycologia 95:756–764, 10.2307/3761949
   Google Scholar
• BauerRBegerowDSampaioJPWeissMOberwinklerF. 2006. The simple-septate basidiomycetes: a synopsis. Mycol Prog 5:41–66, 10.1007/s11557-006-0502-0
   Web of Science ®Google Scholar
• BegerowDBauerROberwinklerF. 1997. Phylogenetic studies on nuclear LSU rDNA sequences of smut fungi and related taxa. Can J Bot 75:2045–2056, 10.1139/b97-916
   Google Scholar
• BuckJW. 2002. In vitro antagonism of Botrytis cinerea by phylloplane yeasts. Can J Bot 80:885–891, 10.1139/b02-078
   Google Scholar
• CelioGJPadamseeMDentingerBTMBauerRMcLaughlinDJ. 2006. Assembling the Fungal Tree of Life: constructing the structural and biochemical database. Mycologia 98:850–859, 10.3852/mycologia.98.6.850
   Web of Science ®Google Scholar
• DoublésJCMcLaughlinDJ. 1992. Basidial development, life history and the anamorph of Kriegeria eriophori. Mycologia 84:668–678, 10.2307/3760376
   Web of Science ®Google Scholar
• FellJWBoekhoutTFonsecaAScorzettiGStatzell-TallmannA. 2000. Biodiversity and systematics of basidiomycetous yeasts as determined by large-subunit rDNA D1/D2 domain sequence analysis. Int J Syst Evol Microbiol 50:1351–1371, 10.1099/00207713-50-3-1351
   PubMed Web of Science ®Google Scholar
• GardesMBrunsTD. 1993. ITS primers with enhanced specificity for basidiomycetes: application to the identification of mycorrhiza and rusts. Mol Ecol 2:113–118, 10.1111/j.1365-294X.1993.tb00005.x
   PubMed Web of Science ®Google Scholar
• GolubevWIScorzettiG. 2010. Rhodotorula rosulata sp. nov., Rhodotorula silvestris sp. nov. and Rhodotorula straminea sp. nov., novel myo-inositol-assimilating yeast species in the Microbotryomycetes. Int J Syst Evol Microbiol 60:2501–2506, 10.1099/ijs.0.016303-0
   Google Scholar
• HamamotoMNakaseT. 2000. Phylogenetic analysis of the ballistoconidium-forming yeast genus Sporobolomyces based on 18S rDNA sequences. Int J Syst Evol Microbiol 50:1373–1380, 10.1099/00207713-50-3-1373
   Google Scholar
• HochHC. 1986. Freeze substitution of fungi. In: AldrichHCToddWJ, eds. Ultrastructure techniques for microorganisms. New York: Plenum Press. p 183–212.
   Google Scholar
• KirkPMCannonPFMinterDWStalpersJA. 2008. Dictionary of the Fungi. 10th ed. Wallingford, UK: CABI.
   Google Scholar
• KumarSNeiMDudleyJTamuraK. 2008. MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences. Briefings Bioinform 9: 299–306, 10.1093/bib/bbn017
   PubMed Web of Science ®Google Scholar
• KumarTKACelioGJMathenyPBMcLaughlinDJHibbettDSManimohanP. 2007. Phylogenetic relationships of Auriculoscypha based on ultrastructural and molecular studies. Mycol Res 111:268–274, 10.1016/j.mycres.2006.12.003
   Google Scholar
• KurtzmanCPFellJWBoekhoutT, eds. 2011. The yeasts. A taxonomic study. 5th ed. Amsterdam: Elsevier.
   Google Scholar
• LeeJKParkKSParkSParkHSongYHKangSHKimHJ. 2010. An extracellular ice-binding glycoprotein from Arctic psychrophilic yeast. Cryobiology 60:222–228, 10.1016/j.cryobiol.2010.01.002
   PubMed Web of Science ®Google Scholar
• MargesinRFonteynePASchinnerFSampaioJP. 2007. Rhodotorula psychrophila sp. nov., Rhodotorula psychrophenolica sp. nov. and Rhodotorula glacialis sp. nov., novel psychrophilic basidiomycetous yeast species isolated from alpine environments. Int J Syst Evol Microbiol 57:2179–2184, 10.1099/ijs.0.65111-0
   PubMed Web of Science ®Google Scholar
• MarvanováLSuberkroppK. 1990. Camptobasidium hydrophilum and its anamorph, Crucella subtilis: a new heterobasidiomycete from streams. Mycologia 82:208–217, 10.2307/3759849
   Web of Science ®Google Scholar
• MathenyPBGossmannJAZalarPKumarTKAHibbettDS. 2006. Resolving the phylogenetic position of the Wallemiomycetes: an enigmatic major lineage of Basidiomycota. Can J Bot 84:1794–1805, 10.1139/b06-128
   Google Scholar
• MathenyPBWangZBinderMCurtisJMLimYWNilssonRHHughesKWHofstetterVAmmiratiJFSchochCLLangerELangerGMcLaughlinDJWilsonAWFroslevTGeZWKerriganRWSlotJCYangZLBaroniTJFischerMHosakaKMatsuuraKSeidlMTVaurasJHibbettDS. 2007. Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi). Mol Phylogenet Evol 43:430–451, 10.1016/j.ympev.2006.08.024
   PubMed Web of Science ®Google Scholar
• McCormackPJWildmanHGJeffriesP. 1994. Production of antibacterial compounds by phylloplane-inhabiting yeasts and yeastlike fungi. Appl Environ Microbiol 60: 927–931.
   PubMedGoogle Scholar
• McCullyEKRobinowCF. 1972. Mitosis in heterobasidiomycetous yeasts I. Leucosporidium scottii (Candida scottii). J Cell Sci 10:857–881.
   PubMed Web of Science ®Google Scholar
• McLaughlinDJ. 1990. A new cytoplasmic structure in the basidiomycete Helicogloea: the microscala. Exp Mycol 14:331–338, 10.1016/0147-5975(90)90056-Y
   Google Scholar
• McLaughlinDJFriedersEMBerresMEDoublésJCWickSM. 1996. Immunofluorescence analysis of the microtubule cytoskeleton in the yeast phase of the basidiomycetes Kriegeria eriophori and Septobasidium carestianum. Mycologia 88:339–349, 10.2307/3760874
   Web of Science ®Google Scholar
• MillerMAPfeifferWSchwartzT. 2010. Creating the CIPRES science gateway for inference of large phylogenetic trees. New Orleans: Proceedings of the Gateway Computing Environments Workshop. p 1–8.
   Google Scholar
• MooreRT. 1996. An inventory of the phylum Ustomycota. Mycotaxon 59:1–31.
   Web of Science ®Google Scholar
• NakaseT. 2000. Expanding world of ballistosporous yeasts: distribution in the phyllosphere, systematics and phylogeny. J Gen Appl Microbiol 46:189–216, 10.2323/jgam.46.189
   Google Scholar
• NishidaHAndoKAndoYHirataASugiyamaJ. 1995. Mixia osmundae: transfer from the Ascomycota to the Basidiomycota based on evidence from molecules and morphology. Can J Bot 73:S660–S666, 10.1139/b95-308
   Google Scholar
• RobersonRWFullerMS. 1988. Ultrastructural aspects of the hyphal tip of Sclerotium rolfsii preserved by freeze substitution. Protoplasma 146:143–149, 10.1007/BF01405923
   Web of Science ®Google Scholar
• RonquistFHuelsenbeckJP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–1574, 10.1093/bioinformatics/btg180
   PubMed Web of Science ®Google Scholar
• SampaioJP. 2004. Diversity, phylogeny and classification of basidiomycetous yeasts. In: AgererRPiepenbringMBlanzP, eds. Frontiers in basidiomycote mycology. Eching, Germany: IHW-Verlag. p 49–80.
   Google Scholar
• SampaioJPGadanhoMBauerRWeissM. 2003. Taxonomic studies in the Microbotryomycetidae: Leucosporidium golubevii sp. nov., Leucosporidiella gen. nov. and the new orders Leucosporidiales and Sporidiobolales. Mycol Prog 2:53–68, 10.1007/s11557-006-0044-5
   Google Scholar
• ScorzettiGFellJWFonsecaAStatzell-TallmanA. 2002. Systematics of basidiomycetous yeasts: a comparison of large subunit D1/D2 and internal transcribed spacer rDNA regions. FEMS Yeast Res 2:495–517.
   PubMed Web of Science ®Google Scholar
• ShivajiSBhadraBRaoRSPradhanS. 2008. Rhodotorula himalayensis sp. nov., a novel psychrophilic yeast isolated from Roopkund Lake of the Himalayan mountain ranges, India. Extremophiles 12:375–381, 10.1007/s00792-008-0144-z
   PubMed Web of Science ®Google Scholar
• SwannECFriedersEMMcLaughlinDJ. 1999. Microbotryum, Kriegeria and the changing paradigm in basidiomycete classification. Mycologia 91:51–66, 10.2307/3761193
   Web of Science ®Google Scholar
• SwannECTaylorJW. 1995. Phylogenetic perspectives on the basidiomycete systematics: evidence from the 18S rRNA gene. Can J Bot 73:S862–S868, 10.1139/b95-332
   Google Scholar
• SwoffordDL. 2002. PAUP* 4: phylogenetic analysis using parsimony (*and other methods). Sunderland, Massachusetts: Sinauer Associates.
   Google Scholar
• TakashimaMSuhS-ONakaseT. 1995. Phylogenetic relationships among the species of the genus Bensingtonia and related taxa based on the small subunit ribosomal DNA sequences. J Gen Appl Microbiol 41: 131–141, 10.2323/jgam.41.131
   Web of Science ®Google Scholar
• TurchettiBThomas HallSRConnellLBBrandaEBuzziniPTheelenBMüllerWHBoekhoutT. 2011. Psychrophilic yeasts from Antarctica and European glaciers: description of Glaciozyma gen. nov., Glaciozyma martini sp. nov. and Glaciozyma watsonii sp. nov. Extremophiles 15:573–586, 10.1007/s00792-011-0388-x
   PubMed Web of Science ®Google Scholar
• VilgalysRHesterM. 1990. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol 172:4238–4246.
   PubMed Web of Science ®Google Scholar
• WhippsJMHandPPinkDBendingGD. 2008. Phyllosphere microbiology with special reference to diversity and plant genotype. J Appl Microbiol 105:1744–1755, 10.1111/j.1365-2672.2008.03906.x
   PubMed Web of Science ®Google Scholar
• WhiteTJBrunsTDLeeSTaylorJW. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: InnisMAGelfandDHSninskyJJWhiteTJ, eds. PCR protocols: a guide to methods and applications. Academic Press. p 315–322.
   Google Scholar