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Original Articles

SNP markers identify widely distributed clonal lineages of Phytophthora colocasiae in Vietnam, Hawaii and Hainan Island, China

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Pages 676-685 | Received 18 May 2013, Accepted 15 Jan 2014, Published online: 20 Jan 2017

Literature Cited

  • AnnPJKaoCWKoWH. 1986. Mating-type distribution of Phytophthora colocasiae in Taiwan. Mycopathologia 93: 193–194, doi:10.1007/BF00443524
  • BairdNAEtterPDAtwoodTSCurreyMCShiverALLewisZASelkerEUCreskoWAJohnsonEA. 2008. Rapid SNP discovery and genetic mapping using sequenced RAD markers. PLoS One 3:e3376, doi:10.1371/journal.pone.0003376
  • BergquistRR. 1972. Efficacy of fungicides for control of Phytophthora leaf blight of taro. Ann Bot 36:281–287.
  • CABI/EPPO. 1997, Phytophthora colocasiae. Distribution maps of plant diseases No. 466. Wallingford, UK: CAB International.
  • CaillonSQuero-GarciaJLescureJPLebotV. 2006. Nature of taro (Colocasia esculenta [L.] Schott) genetic diversity prevalent in a Pacific Ocean island, Vanua Lava, Vanuatu. Genet Res Crop Evol 53:1273–1289, doi:10.1007/s10722-005-3877-x
  • DaveyJWBlaxterML. 2010. RADSeq: next-generation population genetics. Brief Funct Genomics 9:416–423, doi:10.1093/bfgp/elq031
  • DobrowolskiMPTommerupICBlakemanHDO’BrienPA. 2002. Non-Mendelian inheritance revealed in a genetic analysis of sexual progeny of Phytophthora cinnamomi with microsatellite markers. Fungal Genet Biol 35:197–212 FAO. FAOSTAT. Food and Agriculture Organization. Available at: http://faostat.fao.org, doi:10.1006/fgbi.2001.1319
  • GobenaDMcGrathMLamourK. 2011. Survival and spread of Phytophthora capsici on Long Island, New York. Mycol Prog.
  • HuJDiaoYZhouYLinDBiYPangZTrout-FryxellRLiuXLamourK. 2013. Loss of heterozygosity drives clonal diversity of Phytophthora capsici in China. PLoS ONE (in press).
  • KoWH. 1979. Mating types distribution of Phytophthora colocasiae on Island of Hawaii. Mycologia 71:434–437, doi:10.2307/3759163
  • LamourKFinleyL. 2006. A strategy for recovering high quality genomic DNA from a large number of Phytophthora isolates. Mycologia 98:514–517, doi:10.3852/mycologia.98.3.514
  • LamourKFinleyLMudgeJGobenaDHurtado-GonzalezOShmutzJKuoAMillerNARiceBJRaffaeleSCanoLMBhartiAKDonahooRSFinleySHuitemaEHulveyJPlattDSalamovASavidorASharmaRStamRStoreyDThinesMWinJHaasBJDinwiddieDLJenkinsJKnightJRAffourtitJPHanCSChertkovOLindquistEADetterCGrigorievIVKamounSKingsmoreSK. 2012. Genome sequencing and mapping reveal loss of heterozygosity as a mechanism for rapid adaptation in the vegetable pathogen Phytophthora capsici. Mol Plant Microbe Interact 25:1350–1360, doi:10.1094/MPMI-02-12-0028-R
  • LebotVHerailCGunuaTPardalesJPranaMThongjiemMVietN. 2003. Isozyme and RAPD variation among Phytophthora colocasiae isolates from southeast Asia and the Pacific. Plant Pathol 52:303–313, doi:10.1046/j.1365-3059.2003.00851.x
  • LinM-JKoW-H. 2008. Occurrence of isolates of Phytophthora colocasiae in Taiwan with homothallic behavior and its significance. Mycologia 100:727–734, doi:10.3852/08-070
  • MishraAKSharmaKMisraRS. 2010. Isozyme and PCR-based genotyping of epidemic Phytophthora colocasiae associated with taro leaf blight. Arch Phytopathol Plant Protect 43:1367–1380, doi:10.1080/03235400802476450
  • MiyasakaSCLamourKShintakuMShresthaSUchidaJ. 2013. Taro leaf blight caused by Phytophthora colocasiae. In: LamourK, ed. Phytophthora: a global perspective. UK: Wiley-Blackwell. p 104–112.
  • MiyasakaSCMcCullochCENelsonSC. 2012. Taro germplasm evaluated for resistance to taro leaf blight. Hort Technol 22:838–849.
  • MontgomeryJWittwerCTPalaisRZhouL. 2007. Simultaneous mutation scanning and genotyping by high-resolution DNA melting analysis. Nat Protoc 2:59–66, doi:10.1038/nprot.2007.10
  • PaikiFA. 1996. Symptoms of taro leaf blight (Phytophthora colocasiae) and relationship with yield component in Biak, Irian jaya. Sci New Guinea 21:153–157.
  • PeakallRSmousePE. 2006. GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes 6:288–295, doi:10.1111/j.1471-8286.2005.01155.x
  • PritchardJKStephensMDonellyP. 2000. Inference of population structure using multilocus genotype data. Genetics 155:945–959.
  • RaciborskiM. 1900. Parasitic algae and fungi, Java. Batavia Bull NY State Mus 19:189.
  • SchornackSHuitemaECanoLMBozkurtTOOlivaRvan DammeMSchwizerSRaffaeleSChaparro-GarciaAFarrerRSegretinMEBosJHaasBJZodyMCNusbaumCWinJThinesMKamounS. 2009. Ten things to know about oomycete effectors. Mol Plant Pathol 10:795–803, doi:10.1111/j.1364-3703.2009.00593.x
  • SharmaKMishraAMisraR. 2009. Identification and characterization of differentially expressed genes in the resistance reaction in taro infected with Phytophthora colocasiae. Mol Biol Rep 36:1291–1297, doi:10.1007/s11033-008-9311-7
  • TrujilloEE. 1967. Diseases of the genus Colocasia in the Pacific area and their control. Proc 2nd int symp trop root tuber crops. Univ. Hawaii. p 136–40.
  • TysonJLFullertonRA. 2007. Mating types of Phytophthora colocasiae from the Pacific region, India and southeast Asia. Australasian Plant Dis Notes 2:111–112, doi:10.1071/DN07046
  • VasquezEA. 1990. Yield loss in taro due to Phytophthora leaf blight. J Root Crops 16:48–50.
  • VavilovNI. 1951. The origin, variation, immunity and breeding of cultivated plants. Soil Sci 72:482, doi:10.1097/00010694-195112000-00018
  • ZhangKMZhengFCLiYDAnnPJKoWH. 1994. Isolates of Phytophthora colocasiae from Hainan Island in China: evidence suggesting an Asian origin of this species. Mycologia 86:108–112, doi:10.2307/3760724
  • ZhouLWangLPalaisRPryorRWittwerCT. 2005. High-resolution DNA melting analysis for simultaneous mutation scanning and genotyping in solution. Clinic Chem 51:1770–1777, doi:10.1373/clinchem.2005.054924

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