Multigene phylogeny of the Phallales (Phallomycetidae, Agaricomycetes) focusing on some previously unrepresented genera

Literature cited

• AgererR. 2006. Fungal relationships and structural identity of their ectomycorrhizae. Mycol Prog 5:67–107, doi:10.1007/s11557-006-0505-x
   Web of Science ®Google Scholar
• CabralTSMarinhoPGotoBTBaseiaIG. 2012. Abrachium, a new genus in the Clathraceae, and Itajahya reassessed. Mycotaxon 119:419–429, doi:10.5248/119.419
   Web of Science ®Google Scholar
• CalongeFD. 1998. Gasteromycetes, I. Lycoperdales, Nidulariales, Phallales, Sclerodermatales, Tulostomatales. Flora mycologica Iberica. Vol. 3. Berlin: J. Cramer.
   Google Scholar
• CalongeFD. 2005. A tentative key to identify the species of Phallus. Bol Soc Micol Madrid 29:9–18.
   Google Scholar
• ColganWCastellanoMABougherNL. 2005. Nats truffle and truffle-like fungi 2: Kjeldsenia aureispora gen. et sp. nov., a truffle-like fungus in the Cortinariaceae. Mycotaxon 55:175–178.
   Google Scholar
• ComandiniORinaldiACKuyperTW. 2012. Measuring and estimating ectomycorrhizal fungal diversity: a continuous challenge. In: PaganoM, ed. Mycorrhiza: occurrence in natural and restored environments. Huntington, New York: Nova Science Publishers. p 165–200.
   Google Scholar
• CordaACJ. 1892. Icones Fungorum hucusque cognitorum V. Prague: JG Calve.
   Google Scholar
• CunninghamGH. 1931. The gasteromycetes of Australasia X. The Phallales I. Proc Linn Soc NSW 56:1–15.
   Google Scholar
• DennisRWG. 1970. Fungus flora of Venezuela and adjacent countries. Kew Bull Addit Ser 3:1–531.
   Google Scholar
• Domínguez de ToledoLSCastellanoMA. 1997. First report of Gastrosporium simplex (Gasteromycetes) from South America. Mycotaxon 64:443–448.
   Google Scholar
• DörfeltHBumžaaD. 1986. Die Gasteormyceten (Bauchpilze) der Mongolischen Volksrepublik. Nova Hedwigia 43:87–111.
   Google Scholar
• DringDM. 1973. Gasteromycetes. In: AinsworthGCSparrowFKSussmanAS, eds. The fungi: an advanced treatise. Vol. IVB. New York: Academic Press. p 451–478.
   Google Scholar
• DringDM. 1980. Contributions toward a rational arrangement of the Clathraceae. Kew Bull 35:1–96, doi:10.2307/4117008
   Google Scholar
• EdgarRC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792–1797, doi:10.1093/nar/gkh340
   PubMed Web of Science ®Google Scholar
• FischerE. 1898–1999. Phallineae. In: EnglerAPrantlK, eds. Die natürlichen Pflanzenfamilien, Teil 1, Abteilung 1**. Leipzig, Germany: W. Engelmann. p 276–296.
   Google Scholar
• FischerE. 1933. Reihe Gasteromyceteae. In: EnglerAPrantlK, eds. Die natürlichen Pflanzenfamilien. Ed. 2. Band 7a. Leipzig, Germany: W. Engelmann. p 1–122.
   Google Scholar
• FogelR. 1980. Additions to the hypogeous mycoflora of the Canary Islands and Madeira. Contr Univ Mich Herb 14:75–82.
   Google Scholar
• GiachiniAJHosakaKNouhraESpataforaJTrappeJ. 2010. Phylogenetic relationships of the Gomphales based on nuc-25S-rDNA, mit-12S-rDNA, and mit-atp6-DNA combined sequences. Fungal Biol 114:224–234, doi:10.1016/j.funbio.2010.01.002
   Web of Science ®Google Scholar
• GuindonSDufayardJFLefortVAnisimovaMHordijkWGascuelO. 2010. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59:307–321, doi:10.1093/sysbio/syq010
   PubMed Web of Science ®Google Scholar
• HallTA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98.
   Google Scholar
• HibbettDSBinderM. 2002. Evolution of complex fruiting-body morphologies in homobasidiomycetes. Proc Roy Soc London, Ser B 269:1963–1969, doi:10.1098/rspb.2002.2123
   Google Scholar
• HosakaKBatesSTBeeverRECastellanoMEColganWDomínguezLNouhraERGemlJGiachiniAJKenneySRSimpsonNBSpataforaJWTrappeJM. 2006. Molecular phylogenetics of the gomphoid-phalloid fungi with an establishment of the new subclass Phallomycetidae and two new orders. Mycologia 98: 949–959, doi:10.3852/mycologia.98.6.949
   PubMed Web of Science ®Google Scholar
• HosakaKCastellanoME. 2008. Molecular phylogenentics of Geastrales with special emphasis on the position of Sclerogaster. Bull Natl Mus Nat Sci, Ser B 34:161–173.
   Google Scholar
• IosifidouPAgererR. 2002. The rhizomorphs of Gastrosporium simplex and some ideas on the systematic position of the Gastrosporiaceae (Hymenomycetes, Basidiomycota). Feddes Repert 113:11–23, doi:10.1002/1522-239X(200205)113:1/2<11::AID-FEDR11>3.0.CO;2-B
   Google Scholar
• JülichW. 1981. Higher taxa of basidiomycetes. Biblioth Mycol 85:1–485.
   Google Scholar
• KasuyaTHosakaKUnoKKakishimaM. 2012. Phylogenetic placement of Geastrum melanocephalum and polyphyly of Geastrum triplex. Mycoscience 53:411–426, doi:10.1007/S10267-012-0186-Z
   Web of Science ®Google Scholar
• KreiselH. 1996. A preliminary survey of the genus Phallus sensu lato. Czech Mycol 48:273–281.
   Google Scholar
• KretzerABrunsTD. 1999. Use of atp6 in fungal phylogenetics: an example from the Boletales. Mol Phylogenet Evol 13:483–492, doi:10.1006/mpev.1999.0680
   PubMed Web of Science ®Google Scholar
• LloydCG. 1908. Mycological notes 31. The phalloids of Japan. Mycol Writings 2:400–406.
   Google Scholar
• LloydCG. 1909. Mycological series 4. Synopsis of the known Phalloids. Mycol Writings 3:1–96.
   Google Scholar
• LongWHStoufferDJ. 1948. Studies in the Gasteromycetes XVI. The Geastraceae of the southwestern United States. Mycologia 40:547–585, doi:10.2307/3755257
   Web of Science ®Google Scholar
• MallochD. 1989. Notes on the genus Protubera (Phallales). Mycotaxon 34:133–151.
   Google Scholar
• MathenyPB. 2005. Improving phylogenetic inference of mushrooms with RPB1 and RPB2 nucleotide sequences (Inocybe; Agaricales). Mol Phylogenet Evol 35:1–20, doi:10.1016/j.ympev.2004.11.014
   PubMed Web of Science ®Google Scholar
• MillerOKMillerHH. 1988. Gasteromycetes. Morphological and development features with keys to the orders, families and genera. Eureka, California: Mad River Press.
   Google Scholar
• MontagneC. 1855. Cryptogamia Guayanensis. Ann Sci Nat, Bot, Ser 4 3:91–144.
   Google Scholar
• OttoniTBSSilvaBDBFazolinoEPBaseiaIG. 2010. Phallus roseus, first record from the Neotropics. Mycotaxon 112:5–8, doi:10.5248/112.5
   Google Scholar
• PilátA. 1958. Phallales. In: CejpKMoravecZPilátAPouzarZStaněkVJSurčekMŠebekSSmardaF, eds. Gasteromycetes. Praha: Nakladatelstvi Československé Akademie Věd. p 704–715.
   Google Scholar
• RonquistFTeslenkoMvan der MarkPAyresDLDarlingAHohnaSLargetBLiuLSuchardMAHuelsenbeckJP. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol 61:539–42, doi:10.1093/sysbio/sys029
   PubMed Web of Science ®Google Scholar
• SwoffordDL. 2002. PAUP* 4.0b10: phylogenetic analysis using parsimony and other methods. Sunderland, Massachusetts: Sinauer Associates.
   Google Scholar
• TedersooLMayTWSmithM. 2010. Ectomycorrhizal lifestyle in fungi: global diversity, distribution and evolution of phylogenetic lineages. Mycorrhiza 20: 217–263, doi:10.1007/s00572-009-0274-x
   PubMed Web of Science ®Google Scholar
• Trierveiler-PereiraTMeijerAARHosakaKSilveiraRMB. 2014. Updates on Protubera (Protophallaceae, Phallales) and additional notes on P. maracuja. Mycoscience 55:35–42, doi:10.1016/j.myc.2013.05.001
   Google Scholar
• Trierveiler-PereiraTSilveiraRMB. 2012. Notes on Xylophallus xylogenus (Phallaceae, Agaricomycetes) based on Brazilian specimens. Mycotaxon 120:309–316, doi:10.5248/120.309
   Google Scholar
• VilgalysRHesterM. 1990. Rapid genetic identification and mapping of enzymatically amplified DNA from several Cryptococcus species. J Bacteriol 172:4238–4246.
   PubMed Web of Science ®Google Scholar
• ZellerSM. 1939. New and noteworthy Gasteromycetes. Mycologia 31:1–32, doi:10.2307/3754429
   Google Scholar
• ZellerSM. 1949. Keys to the orders, families and genera of the Gasteromycetes. Mycologia 41:36–58, doi:10.2307/3755271
   Web of Science ®Google Scholar