Acidomelania panicicola gen. et sp. nov. from switchgrass roots in acidic New Jersey pine barrens

Literature Cited

• BidartondoMIBrunsTDBlackwellMEdwardsITaylorAFSHortonTZhangNKoljalgUMayGKuyperTWBeverJDGilbertGTaylorJWDeSantisTZPringleABornemanJThornGBerbeeMMuellerGMAndersenGLVellingaECBrancoSAndersonIDickieIAAvisPTimonenSKjollerRLodgeDJBatemanRMPurvisACrousPWHawkesCBarracloughTBurtANilssonRHLarssonKHAlexanderIMoncalvoJMBerubeJSpataforaJLumbschHTBlairJESuhSOPfisterDHBinderMBoehmEWKohnLMataJLDyerPSungGHDentingerBSimmonsEGBairdREVolkTJPerryBAKerriganRWCampbellJRajeshJReynoldsDRGeiserDHumberRAHausmannNSzaroTStajichJGathmanAPeayKGHenkelTRobinsonCHPukkilaPJNguyenNHVillaltaCKennedyPBergemannSAimeMCKauffFPorras-AlfaroAGueidanCBeckAAndersenBMarekSCrouchJAKerriganJRistainoJBHodgeKTKuldauGSamuelsGJRajaHAVoglmayrHGardesMJanosDPRogersJDCannonPWoolfolkSWKistlerHCCastellanoMAMaldonado-RamirezSLKirkPMFarrarJJOsmundsonTCurrahRSet al. 2008. Preserving accuracy in GenBank. Science 319:1616, doi:10.1126/science.319.5870.1616a
   PubMed Web of Science ®Google Scholar
• CarboneIKohnLM. 1999. A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia 91:553–556, doi:10.2307/3761358
   Web of Science ®Google Scholar
• DayMJHallJCCurrahRS. 2012. Phialide arrangement and character evolution in the helotialean anamorph genera Cadophora and Phialocephala. Mycologia 104: 371–381, doi:10.3852/11-059
   Web of Science ®Google Scholar
• DigbySGoosRD. 1987. Morphology, development and taxonomy of Loramyces. Mycologia 79:821–831, doi:10.2307/3807683
   Google Scholar
• EdgarRC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput, Nucleic Acids Res 32:1792–1797, doi:10.1093/nar/gkh340
   Google Scholar
• FormanRTT. 1998. Pine Barrens: Ecosystem and Landscape. New Jersey: Rutgers University Press. 601 p.
   Google Scholar
• GrünigCRBrunnerPCDuòASieberTN. 2008a. Assignment of species rank to six reproductively isolated cryptic species of the Phialocephala fortinii s.l.-Acephala applanata species complex. Mycologia 100:46–67, doi:10.3852/mycologia.100.1.47
   Google Scholar
• GrünigCRQuelozVSieberTNHoldenriederO. 2008b. Dark septate endophytes (DSE) of the Phialocephala fortinii s.l.-Acephala applanata species complex in tree roots: classification, population biology and ecology. Botany 86:1355–1369, doi:10.1139/B08-108
   Web of Science ®Google Scholar
• GrünigCRSieberTN. 2005. Molecular and phenotypic description of the widespread root symbiont Acephala applanata gen. et sp. nov., formerly known as dark-septate endophyte Type 1. Mycologia 97:628–640, doi:10.3852/mycologia.97.3.628
   Google Scholar
• HibbettDSTaylorJW. 2013. Fungal systematics: Is a new age of enlightenment at hand? Nat Rev Microbiol 11: 129–133, doi:10.1038/nrmicro2963
   PubMed Web of Science ®Google Scholar
• IngoldCTChapmanB. 1952. Aquatic Ascomycetes: Loramyces juncicola Weston and L. macrospora n. sp. Trans Br Mycol Soc 35:268–272, doi:10.1016/S0007-1536(52)80036-1
   Google Scholar
• JumpponenATrappeJM. 1998. Dark septate endophytes: a review of facultative biotrophic root-colonizing fungi. New Phytol 140:295–310, doi:10.1046/j.1469-8137.1998.00265.x
   PubMed Web of Science ®Google Scholar
• KeddyPA. 2007. Plants and vegetation: origins, processes, consequences. Cambridge, UK: Cambridge Univ. Press. 666 p.
   Google Scholar
• KnappDGPintyeAKovásGM. 2012. The dark side is not fastidious—dark-septate endophytic fungi of native and invasive plants of semiarid sandy areas. PLos One 7: e32570, doi:10.1371/journal.pone.0032570
   PubMed Web of Science ®Google Scholar
• LumbschHTHuhndorfSH. 2010. Myconet. Vol. 14. Fieldiana, life and earth sciences 1:1–64, doi:10.3158/1557.1
   Google Scholar
• MandyamKJumpponenA. 2005. Seeking the elusive function of the root-colonizing dark-septate endophytic fungi. Stud Mycol 53:173–189, doi:10.3114/sim.53.1.173
   Google Scholar
• MandyamKLoughinTJumpponenA. 2010. Isolation and morphological and metabolic characterization of common endophytes in annually burned tallgrass prairie. Mycologia 102:813–821, doi:10.3852/09-212
   PubMed Web of Science ®Google Scholar
• MenkisAAllmerJVasiliauskasRLygisVStenlidJFinlayR. 2004. Ecology and molecular characterization of dark septate fungi from roots, living stems, coarse and fine woody debris. Mycol Res 108:965–973, doi:10.1017/S0953756204000668
   PubMed Web of Science ®Google Scholar
• RehnerSASamuelsGJ. 1995. Molecular systematics of the Hypocreales—a teleomorph gene phylogeny and the status of their anamorphs. Can J Bot 73:S816–S823, doi:10.1139/b95-327
   Google Scholar
• RidgwayR. 1912. Color standards and color nomenclature. Washington, DC: Ridgway.
   Google Scholar
• SchochC Fungal Barcoding Consortium. 2012. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. 2012. Proc Natl Acad Sci USA 109:6241–6246, doi:10.1073/pnas.1117018109
   PubMed Web of Science ®Google Scholar
• StoykeGCurrahRS. 1991. Endophytic fungi from the mycorrhizae of alpine ericoid plants. Can J Bot 69:347–352, doi:10.1139/b91-047
   Google Scholar
• TamuraKPetersonDPetersonNStecherGNeiMKumarS. 2011. MEGA 5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance and maximum parsimony methods. Mol Biol Evol 28:2731–2739, doi:10.1093/molbev/msr121
   PubMed Web of Science ®Google Scholar
• TaylorJWJacobsonDJKrokenSKasugaTGeiserDMHibbettDSFisherMC. 2000. Phylogenetic species recognition and species concepts in fungi. Fungal Gen Biol 31:21–32, doi:10.1006/fgbi.2000.1228
   PubMed Web of Science ®Google Scholar
• TuiningaARDightonJ. 2004. Changes in ectomycorrhizal communities and nutrient availability following prescribed burning in two upland pine-oak forests in the New Jersey pine barrens. Can J For Res 43:1755–1765, doi:10.1139/x04-037
   Google Scholar
• WangZJohnstonPRTakamatsuSSpataforaJWHibbettDS. 2006. Toward a phylogenetic classification of the Leotiomycetes based on rDNA data. Mycologia 98: 1065–1075, doi:10.3852/mycologia.98.6.1065
   PubMed Web of Science ®Google Scholar
• WestonWH. 1929. Observations on Loramyces, an undescribed aquatic ascomycete. Mycologia 21:55–76, doi:10.2307/3753939
   Google Scholar
• WhiteTJBrunsTLeeSTaylorJ. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: InnisMGelfandDSninskyJWhiteT eds. PCR protocols: a guide to methods and applications. New York: Academic Press.
   Google Scholar
• ZijlstraJDvan’t HofPBarJVerkleyGJMSummerbellRCParadiIBraakhekkeWGBerendseF. 2005. Diversity of symbiotic root endophytes of the Helotiales in ericaceous plants and the grass, Deschampsia flexuosa. Stud Mycol 53:147–162, doi:10.3114/sim.53.1.147
   Google Scholar