261
Views
1
CrossRef citations to date
0
Altmetric
Original Articles

Characterization and phylogenetic analysis of the mating-type loci in the asexual ascomycete genus Ulocladium

, , , , &
Pages 649-665 | Received 06 Dec 2013, Accepted 17 Feb 2014, Published online: 20 Jan 2017

Literature cited

  • ArieTKanekoIYoshidaTNoguchiMNomuraYYamaguchiI. 2000. Mating-type genes from asexual phytopathogenic ascomycetes Fusarium oxysporum and Alternaria alternata. Mol Plant Microbe Interact 13: 1330–1339, doi:10.1094/MPMI.2000.13.12.1330
  • AstellCRAhlstrom-JonassonLSmithMTatchellKNasmythKAHallBD. 1981. The sequence of the DNAs coding for the mating-type loci of Saccharomyces cerevisiae. Cell 27:15–23, doi:10.1016/0092-8674(81)90356-1
  • BarveMArieTSalimathSMuehlbauerFPeeverT. 2003. Cloning and characterization of the mating type locus from Ascochyta rabiei (teleomorph: Didymella rabiei) and a MAT phylogeny of legume-associated Ascochyta spp. Fungal Genet Biol 39:151–167, doi:10.1016/S1087-1845(03)00015-X
  • BellG. 1982. The masterpiece of nature: the evolution and genetics of sexuality. Berkeley: Univ. California Press. 635 p.
  • BennettRYunSHLeeTTurgeonBArseniukECunferBBergstromG. 2003. Identity and conservation of mating type genes in geographically diverse isolates of Phaeosphaeria nodorum. Fungal Genet Biol 40:25–37, doi:10.1016/S1087-1845(03)00062-8
  • BlakesleeAF. 1904. Sexual reproduction in the Mucorinae. Proc Am Acd Arts Sci 40:205–319, doi:10.2307/20021962
  • BöhmJHoffBO’DonnellCMWolfersSKlixVBingerDZadraIKürnsteinerHPöggelerSKückU. 2013. Sexual reproduction and mating type-mediated strain development in the penicillin-producing fungus Penicillium chrysogenum. Proc Natl Acad Sci USA 110:1476–1481, doi:10.1073/pnas.1217943110
  • BoltonMDSecorGARiveraVWeilandJJRudolphKBirlaKRengifoJCampbellLG. 2012. Evaluation of the potential for sexual reproduction in field populations of Cercospora beticola from USA. Fungal Biol 116: 511–521, doi:10.1016/j.funbio.2012.01.011
  • BowdenRLLeslieJF. 1999. Sexual recombination in Gibberella zeae. Phytopathology 89: 182–188, doi:10.1094/PHYTO.1999.89.2.182
  • BushleyKELiYWangWJWangXLJiaoLSpataforaJWYaoYJ. 2013. Isolation of the MAT1-1 mating type idiomorph and evidence for selfing in the Chinese medicinal fungus Ophiocordyceps sinensis. Fungal Biol 117:599–610, doi:10.1016/j.funbio.2013.06.001
  • ChaverriPBischoffJFEvansHCHodgeKT. 2005. Regiocrella, a new entomopathogenic genus with a pycnidial anamorph and its phylogenetic placement in the Clavicipitaceae. Mycologia 97: 1225–1237, doi:10.3852/mycologia.97.6.1225
  • CoppinEDebuchyRArnaiseSPicardM. 1997. Mating types and sexual development in filamentous ascomycetes. Microbiol Mol Biol Rev 61:411–428.
  • DebuchyRTurgeonB. 2006. Mating-type structure, evolution and function in Euascomycetes. Growth, differentiation and sexuality. Mycota 1:293–323, doi:10.1007/3-540-28135-5_15
  • DoyleJJ. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19:11–15.
  • DyerPSO’GormanCM. 2012. Sexual development and cryptic sexuality in fungi: insights from Aspergillus species. Microbiol Rev 36:165–192.
  • EisenJ. 2000. Horizontal gene transfer among microbial genomes: new insights from complete genome analysis. Curr Opin Genet Dev 10:606–611, doi:10.1016/S0959-437X(00)00143-X
  • FelsensteinJ. 1974. The evolutionary advantage of recombination. Genetics 78:737–756.
  • FosterSJFittBDL. 2004. Isolation and characterisation of the mating-type (MAT) locus from Rhynchosporium secalis. Curr Genet 44:277–286, doi:10.1007/s00294-003-0445-9
  • GalaganJECalvoSECuomoCMaLJWortmanJRBatzoglouSLeeSIBasturkmenMSpevakCCClutterbuckJKapitonovVJurkaJScazzocchioCFarmanMButlerJPurcellSHarrisSBrausGHDrahtOBuschSD’EnfertCBouchierCGoldmanGHBell-PedersenDGriffiths-JonesSDoonanJHYuJVienkenKPainAFreitagMSelkerEUArcherDBPenalvaMAOakleyBRMomanyMTanakaTKumagaiTAsaiKMachidaMNiermanWCDenningDWCaddickMHynesMPaolettiMFischerRMillerBDyerPSachsMSOsmaniSABirrenBW. 2005. Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae. Nature 438: 1105–1115, doi:10.1038/nature04341
  • GlassNLVollmerSJStabenCGrotelueschenJMetzenbergRLYanofskyC. 1988. DNAs of the two mating-type alleles of Neurospora crassa are highly dissimilar. Science 241:570–573, doi:10.1126/science.2840740
  • GroenewaldMGroenewaldJZHarringtonTCAbelnECCrousPW. 2006. Mating type gene analysis in apparently asexual Cercospora species is suggestive of cryptic sex. Fungal Genet Biol 43:813–825, doi:10.1016/j.fgb.2006.05.008
  • HongSGCramerRALawrenceCBPryorBM. 2005. Alt a 1 allergen homologs from Alternaria and related taxa: analysis of phylogenetic content and secondary structure. Fungal Genet Biol 42:119–129, doi:10.1016/j.fgb.2004.10.009
  • InderbitzinPHarknessJTurgeonBGBerbeeML. 2005. Lateral transfer of mating system in Stemphylium. Proc Natl Acad Sci USA 102:11390–11395, doi:10.1073/pnas.0501918102
  • JohnsonDASimmonsEGMillerJSStewartEL. 2002. Taxonomy and pathology of Macrospora/Nimbya on some North American bulrushes (Scirpus spp.). Mycotaxon 84:413–428.
  • KishinoHHasegawaM. 1989. Evaluation of the maximum likelihood estimate of evolutionary tree topologies from DNA sequence data, and the branch order in Hominoida. J Mol Evol 29:170–179, doi:10.1007/BF02100115
  • KöhlJMolhoekWGoossen-van de GeijnHvan der PlasCHL. 2003. Potential of Ulocladium atrum for biocontrol of onion leaf spot through suppression of sporulation of Botrytis spp. BioControl 48:349–359, doi:10.1023/A:1023614622179
  • KronstadJWStabenC. 1997. Mating type in filamentous fungi. Annu Rev Genet 31:245–276, doi:10.1146/annurev.genet.31.1.245
  • LawrenceDPGannibalPBPeeverTLPryorBM. 2013. The sections of Alternaria: formalizing species-group concepts. Mycologia 105:530–546, doi:10.3852/12-249
  • LawrenceDPParkMSPryorBM. 2012. Nimbya and Embellisia revisited, with nov. comb for Alternaria celosiae and A. perpunctulata. Mycol Prog 11:799–815, doi:10.1007/s11557-011-0793-7
  • LiuYGWhittierRF. 1995. Thermal asymmetric interlaced PCR: automatable amplification and sequencing of insert end fragments from P1 and YAC clones for chromosome walking. Genomics 25: 674–681, doi:10.1016/0888-7543(95)80010-J
  • LucasMTWebsterJ. 1964. Conidia of Pleospora scirpicola and P. valesiaca. Trans Br Mycol Soc 47:247–256, doi:10.1016/S0007-1536(64)80059-0
  • MartinSHWingfieldBDWingfieldMJSteenkampET. 2011. Structure and evolution of the Fusarium mating type locus: new insights from the Gibberella fujikuroi complex. Fungal Genet Biol 48:731–740, doi:10.1016/j.fgb.2011.03.005
  • MetzenbergRLGlassNL. 1990. Mating type and mating strategies in Neurospora. Bioessays 12: 53–59, doi:10.1002/bies.950120202
  • O’DonnellKWardTJGeiserDMCorby KistlerHAokiT. 2004. Genealogical concordance between the mating type locus and seven other nuclear genes supports formal recognition of nine phylogenetically distinct species within the Fusarium graminearum clade. Fungal Genet Biol 41:600–623, doi:10.1016/j.fgb.2004.03.003
  • PeckJR. 1994. A ruby in the rubbish-beneficial mutations, deleterious mutations and the evolution of sex. Genetics 137:597–606.
  • PöggelerS. 1999. Phylogenetic relationships between mating-type sequences from homothallic and heterothallic ascomycetes. Curr Genet 36: 222–231, doi:10.1007/s002940050494
  • PöggelerS. 2001. Mating-type genes for classical strain improvements of ascomycetes. Appl Microbiol Biotechnol 56: 589–601, doi:10.1007/s002530100721
  • PöggelerS. 2002. Genomic evidence for mating abilities in the asexual pathogen Aspergillus fumigatus. Curr Genet 42: 153–160, doi:10.1007/s00294-002-0338-3
  • PöggelerSKückU. 2000. Comparative analysis of the mating-type loci from Neurospora crassa and Sordaria macrospora: identification of novel transcribed ORFs. Mol Gen Genet 263:292–301, doi:10.1007/s004380051171
  • PöggelerSO’GormanCMHoffBKückU. 2011. Molecular organization of the mating-type loci in the homothallic ascomycete Eupenicillium crustaceum. Fungal Biol 115: 615–624, doi:10.1016/j.funbio.2011.03.003
  • PosadaDCrandallKA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14:817–818, doi:10.1093/bioinformatics/14.9.817
  • PragerEMWilsonAC. 1988. Ancient origin of lactalbumin from lysozyme: analysis of DNA and amino-acid sequences. J Mol Evol 27:326–335, doi:10.1007/BF02101195
  • PryorBMBigelowDM. 2003. Molecular characterization of Embellisia and Nimbya species and their relationship to Alternaria, Ulocladium and Stemphylium. Mycologia 95: 1141–1154, doi:10.2307/3761916
  • RauDAtteneGBrownAHDNanniLMaierFJBalmasVSabaESchäferWPapaR. 2007. Phylogeny and evolution of mating-type genes from Pyrenophora teres, the causal agent of barley “net blotch” disease. Curr Genet 51:377–392, doi:10.1007/s00294-007-0126-1
  • RiceWR. 2002. Experimental tests of the adaptive significance of sexual recombination. Nat Rev Genet 3:241–251, doi:10.1038/nrg760
  • RonquistFHuelsenbeckJP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–1574, doi:10.1093/bioinformatics/btg180
  • RunaFParkMSPryorBM. 2009. Ulocladium systematics revisited: phylogeny and taxonomic status. Mycol Prog 8:35–47, doi:10.1007/s11557-008-0576-y
  • RydholmCDyerPSLutzoniF. 2007. DNA sequence characterization and molecular evolution of MAT1 and MAT2 mating-type loci of the self-compatible ascomycete mold Neosartorya fischeri. Eukaryot Cell 6:868–874, doi:10.1128/EC.00319-06
  • SantosJMCorreiaVGPhillipsAJL. 2010. Primers for mating-type diagnosis in Diaporthe and Phomopsis: their use in teleomorph induction in vitro and biological species definition. Fungal Biol 114: 255–270, doi:10.1016/j.funbio.2010.01.007
  • SeibelCTischDKubicekCPSchmollM. 2012. The role of pheromone receptors for communication and mating in Hypocrea jecorina (Trichoderma reesei). Fungal Genet Biol 49:814–824, doi:10.1016/j.fgb.2012.07.004
  • SharonAYamaguchiKChristiansenSHorwitzBAYoderOTurgeonBG. 1996. An asexual fungus has the potential for sexual development. Mol Gen Genet 251: 60–68, doi:10.1007/BF02174345
  • SimmonsEG. 1989. Macrospora Fuckel (Pleosporales) and related anamorphs. Sydowia 41:314–329.
  • SimmonsEG. 1990. Embellisia and related teleomorphs. Mycotaxon 38:251–265.
  • SimmonsEG. 2001. Perfect States of Stemphylium IV. Harvard Pap Bot 6:199–208.
  • SinghGAshbyAM. 1998. Cloning of the mating-type loci from Pyrenopeziza brassicae reveals the presence of a novel mating type gene within a discomycete MAT-1-2 locus encoding a putative metallothionein-like protein. Mol Microbiol 30:799–806, doi:10.1046/j.1365-2958.1998.01112.x
  • SinghGDyerPSAshbyAM. 1999. Intraspecific and interspecific conservation of mating-type genes from the discomycete plant-pathogenic fungi Pyrenopeziza brassicae and Tapesia yallundae. Curr Genet 36:290–300, doi:10.1007/s002940050503
  • StebbinsGL. 1950. Variation and evolution in plants. New York: Columbia Univ. Press.
  • StrandbergRNygrenKMenkisAJamesTYWikLStajichJEJohannessonH. 2010. Conflict between reproductive gene trees and species phylogeny among heterothallic and pseudohomothallic members of the filamentous ascomycete genus Neurospora. Fungal Genet Biol 47:869–878, doi:10.1016/j.fgb.2010.06.008
  • SwoffordDL. 2002. PAUP* 4.0b10: phylogenetic analysis using parsimony (*and other methods). Sunderland, Massachusetts: Sinauer Associates.
  • TempletonAR. 1983. Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and the apes. Evolution 37:221–224, doi:10.2307/2408332
  • ThompsonJDGibsonTJPlewniakFJeanmouginFHigginsDG. 1997. The Clustal X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876–4882, doi:10.1093/nar/25.24.4876
  • TurgeonBG. 1998. Application of mating type gene technology to problems in fungal biology. Annu Rev Phytopathol 36:115–137, doi:10.1146/annurev.phyto.36.1.115
  • TurgeonBGBohlmannHCiuffettiLMChristiansenSKYangGSchäferWYoderO. 1993. Cloning and analysis of the mating-type genes from Cochliobolus heterostrophus. Mol Gen Genet 238:270–284.
  • UengPReszkaEChungKArseniukEKrupinskyJ. 2003. Comparison of glyceraldehyde-3-phosphate dehydrogenase genes in Phaeosphaeria nodorum and P. avenaria species. Plant Pathol Bull 12:255–268.
  • VanniniBAVettrainoA. 2000. Ulocladium chartarum as the causal agent of a leaf necrosis on Quercus pubescens. For Pathol 30:297–303, doi:10.1046/j.1439-0329.2000.00210.x
  • VoigtKCozijnsenAJKroymannJPöggelerSHowlettBJ. 2005. Phylogenetic relationships between members of the crucifer pathogenic Leptosphaeria maculans species complex as shown by mating type (MAT1-2), actin and beta-tubulin sequences. Mol Phylogenet Evol 37:541–557, doi:10.1016/j.ympev.2005.07.006
  • WaalwijkCMendesOVerstappenECPde WaardMAKemaGHJ. 2002. Isolation and characterization of the mating-type idiomorphs from the wheat Septoria leaf-blotch fungus Mycosphaerella graminicola. Fungal Genet Biol 35:277–286, doi:10.1006/fgbi.2001.1322
  • WhiteMJD. 1978. Modes of speciation. San Francisco: W. H. Freeman & Co. 455 p.
  • WikLKarlssonMJohannessonH. 2008. The evolutionary trajectory of the mating-type (mat) genes in Neurospora relates to reproductive behavior of taxa. BMC Evol Biol 8:109, doi:10.1186/1471-2148-8-109
  • WilkenPMSteenkampETHallTAde BeerZWWingfieldMJWingfieldBD. 2012. Both mating types in the heterothallic fungus Ophiostoma quercus contain MAT1-1 and MAT1-2 genes. Fungal Biol 116:427–437, doi:10.1016/j.funbio.2012.01.002
  • WirselSHorwitzBYamaguchiKYoderOTurgeonB. 1998. Single mating type-specific genes and their 3′ UTRs control mating and fertility in Cochliobolus heterostrophus. Mol Gen Genet 259: 272–281, doi:10.1007/s004380050813
  • WoudenbergJHCGroenewaldJZBinderMCrousPW. 2013. Alternaria redefined. Stud Mycol 75:171–212, doi:10.3114/sim0015
  • YunSHArieTKanekoIYoderOCTurgeonBG. 2000. Molecular organization of mating type loci in heterothallic, homothallic and asexual Gibberella/Fusarium species. Fungal Genet Biol 31:7–20, doi:10.1006/fgbi.2000.1226
  • YunSHBerbeeMLYoderOTurgeonBG. 1999. Evolution of the fungal self-fertile reproductive life style from self-sterile ancestors. Proc Natl Acad Sci USA 96:5592–5597, doi:10.1073/pnas.96.10.5592
  • ZaffaranoPLDuòAGrünigCR. 2010. Characterization of the mating type (MAT) locus in the Phialocephala fortinii s.l.-Acephala applanata species complex. Fungal Genet Biol 7:761–772, doi:10.1016/j.fgb.2010.06.001
  • ZhangSZhangYJLiuXZWenHAWangMLiuDS. 2011. Cloning and analysis of the MAT1-2-1 gene from the traditional Chinese medicinal fungus Ophiocordyceps sinensis. Fungal Biol 115:708–714, doi:10.1016/j.funbio.2011.05.004
  • ZhaxybayevaOGogartenJP. 2002. Bootstrap, Bayesian probability and maximum likelihood mapping: exploring new tools for comparative genome analyses. BMC genomics 3:4, doi:10.1186/1471-2164-3-4

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.