Distinct phylogeographic structure recognized within Desmazierella acicola

Literature cited

• AltschulSFGishWMillerWMyersEWLipmanDJ. 1990. Basic local alignment search tool. J Mol Biol 215:403–410, doi:10.1016/S0022-2836(05)80360-2
   PubMed Web of Science ®Google Scholar
• BatraLRBatraSWT. 1963. Indian discomycetes. Univ Kansas Sci Bull 44:109–256.
   Google Scholar
• BillsGFPolishookJD. 1992. Recovery of endophytic fungi from Chamaecyparis thyoides. Sydowia 44:1–12.
   Google Scholar
• DarribaDTaboadaGLDoalloRPosadaD. 2012. jModel-Test 2: more models, new heuristics and parallel computing. Nat Meth 9:772–772, doi:10.1038/nmeth.2109
   PubMed Web of Science ®Google Scholar
• DickieIABolstridgeNCooperJAPeltzerDA. 2010. Co-invasion by Pinus and its mycorrhizal fungi. New Phytologist 187:475–484, doi:10.1111/j.1469-8137.2010.03277.x
   PubMed Web of Science ®Google Scholar
• DíezJ. 2005. Invasion biology of Australian ectomycorrhizal fungi introduced with eucalypt plantations into the Iberian Peninsula. Biol Invasions 7:3–15, doi:10.1007/s10530-004-9624-y
   Web of Science ®Google Scholar
• EllisB. 1971. Dematiaceous Hyphomycetes. Wallingford, United Kingdom: Commonwealth Mycological Institute. 608 p.
   Google Scholar
• FassatiováO. 1986. Molds and filamentous fungi in technical microbiology. Amsterdam: Elsevier. 233 p.
   Google Scholar
• GalánRRaitviirA. 1995. Desmazierella acicola Libert in Spagna. Riv Micol 38:39–44.
   Google Scholar
• GardesMBrunsTD. 1993. ITS primers with enhanced specificity for basidiomycetes—application to the identification of mycorrhizae and rusts. Mol Ecol 2:113–118, doi:10.1111/j.1365-294X.1993.tb00005.x
   PubMed Web of Science ®Google Scholar
• GremmenJ. 1960. A contribution to the mycoflora of the pine forests in the Netherlands. Nova Hedwigia 1:251–288.
   Google Scholar
• HayesAJ. 1965. Studies on the decomposition of coniferous leaf litter. J Soil Sci 16:242–257, doi:10.1111/j.1365-2389.1965.tb01435.x
   Google Scholar
• HughesSJ. 1951. Studies on microfungi IX. Calcarisporium, Verticicladium and Hansfordia (gen. nov.). Mycol Pap 43:3–25.
   Google Scholar
• HuhtinenSMäkinenY. 1984. Finnish records of Discomycetes: a new species in the monotypic genus Desmazierella (Pezizales). Mycotaxon 20:551–557.
   Web of Science ®Google Scholar
• KorfRPZhuangW-Y. 1991. A preliminary discomycete flora of macaronesia 11, Sarcosyphineae. Mycotaxon 40:1–11.
   Web of Science ®Google Scholar
• KoukolOBaldrianP. 2012. Intergeneric variability in enzyme production of microfungi from pine litter. Soil Biol Biochem 49:1–3, doi:10.1016/j.soilbio.2012.02.004
   Web of Science ®Google Scholar
• KowalskiTKehrD. 1992. Endophytic fungi colonization of branch bases in several forest tree species. Sydowia 44:137–168.
   Google Scholar
• LibertM-A. 1829. Description d’un nouveau genre de champignons nommé Desmazierella. Ann Sci Nat 17:82–83.
   Google Scholar
• LiuYJWhelenSHallBD. 1999. Phylogenetic relationships among ascomycetes: evidence from an RNA polymerse II subunit. Mol Biol Evol 16:1799–1808.
   PubMed Web of Science ®Google Scholar
• MaanenAvGourbièreF. 1997. Host and geographical distribution of Verticicladium trifidum, Thysanophora penicillioides and similar fungi on decaying coniferous needles. Can J Bot 75:699–710, doi:10.1139/b97-079
   Google Scholar
• McLennanEIDuckerSC. 1954. The ecology of the soil fungi of an Australian heathland. Aust J Botany 2:220–245, doi:10.1071/BT9540220
   Google Scholar
• McNeillJBarrieFFBuckWRDemoulinVGreuterWHawksworthDLHerendeenPSKnappSMarholdKPradoJet al. 2012. International code of nomenclature for algae, fungi and plants (Melbourne Code): adopted by the 18th International Botanical Congress Melbourne, Australia, Jul 2011. Regnum vegetabile No. 154. Königstein, Germany: Koeltz Scientific Books. 208 p.
   Google Scholar
• MillerMAPfeifferWSchwartzT. 2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Gateway Computing Environments Workshop; 14 Nov 2010; New Orleans, LA. p 1–8.
   Google Scholar
• MitchellCPMillarCSMinterDW. 1978. Studies on decomposition of Scots pine needles. Trans Br Mycol Soc 71:343–348, doi:10.1016/S0007-1536(78)80122-3
   Google Scholar
• PetersonKRBellCDKurogiSPfisterDH. 2004. Phylogeny and biogeography of Chorioactis geaster (Pezizales, Ascomycota) inferred from nuclear ribosomal DNA sequences. Harvard Pap Bot 8:141–152.
   Google Scholar
• PetriniOFisherPJ. 1988. A comparative study of fungal endophytes in xylem and whole stem of Pinus sylvestris and Fagus sylvatica. Trans Br Mycol Soc 91:233–238, doi:10.1016/S0007-1536(88)80210-9
   Web of Science ®Google Scholar
• PfisterDHSlaterCHansenK. 2008. Chorioactidaceae: a new family in the Pezizales (Ascomycota) with four genera. Mycol Res 112:513–527, doi:10.1016/j.mycres.2007.11.016
   Google Scholar
• PreussCGT. 1851. Übersicht untersuchter Pilze, besonders aus der Umgegend von Hoyerswerda. Linnaea 24:99–153.
   Google Scholar
• RambelliAVenturellaGCiccaroneC. 2008. Dematiaceous Hyphomycetes from Pantelleria mediterranean maquis litter. Flora Mediterr 18:441–4467.
   Google Scholar
• RehnerSABuckleyE. 2005. A Beauveria phylogeny inferred from nuclear ITS and EF1-alpha sequences: evidence for cryptic diversification and links to Cordyceps teleomorphs. Mycologia 97:84–98.
   PubMed Web of Science ®Google Scholar
• RonquistFTeslenkoMvan der MarkPAyresDLDarlingAHohnaSLargetBLiuLSuchardMAHuelsenbeckJP. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol 61:539–542, doi:10.1093/sysbio/sys029
   PubMed Web of Science ®Google Scholar
• SomaKSaitôT. 1979. Ecological studies of soil organisms with references to the decomposition of pine needles I. Soil macrofaunal and mycofloral surveys in coastal pine plantations. Rev Ecol Biol Sol 16:337–354.
   Google Scholar
• StamatakisA. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688–2690, doi:10.1093/bioinformatics/btl446
   PubMed Web of Science ®Google Scholar
• SudaJKynclTJarolímováV. 2005. Genome size variation in Macaronesian angiosperms: forty percent of the Canarian endemic flora completed. Plant Syst Evol 252:215–238, doi:10.1007/s00606-004-0280-6
   Web of Science ®Google Scholar
• TamuraKPetersonDPetersonNStecherGNeiMKumarS. 2011. MEGA 5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance and maximum parsimony methods. Mol Biol Evol 28:2731–2739, doi:10.1093/molbev/msr121
   PubMed Web of Science ®Google Scholar
• TejesviMVKajulaMMattilaSPirttiläAM. 2011. Bioactivity and genetic diversity of endophytic fungi in Rhododendron tomentosum Harmaja. Fungal Divers 47:97–107, doi:10.1007/s13225-010-0087-4
   Web of Science ®Google Scholar
• TokumasuS. 1978. Leaf litter fungi of the forests of Pinus densiflora and four introduced pines at Sugadaira, central Japan. Trans Mycol Soc Japan 19:383–390.
   Google Scholar
• TokumasuS. 1998. Fungal successions on pine needles fallen at different seasons: the succession of surface colonizers. Mycoscience 39:417–423, doi:10.1007/BF02460902
   Google Scholar
• TokumasuSAoikiT. 2002. A new approach to studying microfungal succession on decaying pine needles in an oceanic subtropical region in Japan. Fungal Divers 10:167–183.
   Web of Science ®Google Scholar
• TubakiKSaitôT. 1969. Endophragmia alternata sp.nov. and other hyphomycetes on Pinus leaves in Japan. Trans Br Mycol Soc 52:477–482, doi:10.1016/S0007-1536(69)80131-2
   Web of Science ®Google Scholar
• WangS-PZhangM. 2010. Notes on hyphomycetes of conifer needle I. Two newly recorded genera and three newly recorded species from China. Mycosystema 29:592–594.
   Google Scholar
• WhiteTJBrunsTDLeeSTaylorJ. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: InnisMAGelfandDHSninskyJJWhiteTJ, eds. PCR protocols: a guide to methods and applications. San Diego, California: Academic Press. p 315–322.
   Google Scholar