Nuclear DNA content of the hybrid plant pathogen Phytophthora andina determined by flow cytometry

Literature cited

• AdlerNErseliusLChaconMFlierWOrdonezMKroonLForbesG. 2004. Genetic diversity of Phytophthora infestans sensu lato in Ecuador provides new insight into the origin of this important plant pathogen. Phytopathology 94:154–162, doi:10.1094/PHYTO.2004.94.2.154
   PubMed Web of Science ®Google Scholar
• AndersonCLKubisiakTLNelsonCDSmithJADavisJM. 2010. Genome size variation in the pine fusiform rust pathogen Cronartium quercuum f.sp. fusiforme as determined by flow cytometry. Mycologia 102:1295–1302, doi:10.3852/10-040
   Web of Science ®Google Scholar
• BertierLBrouwerHde CockACookeDOlssonCHofteM. 2013. The expansion of Phytophthora clade 8b: three new species associated with winter grown vegetable crops. Persoonia 31:63–76, doi:10.3767/003158513X668554
   PubMed Web of Science ®Google Scholar
• BlairJECoffeyMDMartinFN. 2012. Species tree estimation for the late blight pathogen, Phytophthora infestans, and close relatives. PLoS One 7:e37003, doi:10.1371/journal.pone.0037003
   PubMed Web of Science ®Google Scholar
• BrasierCM. 1995. Episodic selection as a force in fungal microevolution, with special reference to clonal speciation and hybrid introgression. Can J Bot 73:S1213–S1221, doi:10.1139/b95-381
   Google Scholar
• BrasierCMCookeDEDuncanJM. 1999. Origin of a new Phytophthora pathogen through interspecific hybridization. P Natl Acad Sci USA 96:5878–5883, doi:10.1073/pnas.96.10.5878
   PubMed Web of Science ®Google Scholar
• BrurbergMBElameenALeVHNærstadRHermansenALehtinenAHannukkalaANielsenBHansenJAnderssonBYuenJ. 2011. Genetic analysis of Phytophthora infestans populations in the Nordic European countries reveals high genetic variability. Fungal Biol 115:335–342, doi:10.1016/j.funbio.2011.01.003
   PubMed Web of Science ®Google Scholar
• BurgessTI. 2015. Molecular characterization of natural hybrids formed between five related indigenous clade 6 Phytophthora species. PLoS One 10:23, doi:10.1371/journal.pone.0134225
   Google Scholar
• CatalMKingLTumbalamPWiriyajitsomboonPKirkWWAdamsGC. 2010. Heterokaryotic nuclear conditions and a heterogeneous nuclear population are observed by flow cytometry in Phytophthora infestans. Cytometry Part A 77A:769–775, doi:10.1002/cyto.a.20888
   Google Scholar
• CatenCEJinksJL. 1968. Spontaneous variability of single isolates of Phytophthora infestans. I. Cultural variation. Can J Bot 46:329–348, doi:10.1139/b68-055
   Google Scholar
• CookeDECanoLMRaffaeleSBainRACookeLREtheringtonGJDeahlKLFarrerRAGilroyEMGossEMGrünwaldNJHeinIMacLeanDMcNicolJWRandallEOlivaRFPelMAShawDSSquiresJNTaylorMCVleeshouwersVGBirchPRLeesAKKamounS. 2012. Genome analyses of an aggressive and invasive lineage of the Irish potato famine pathogen. PLoS Pathog 8:e1002940, doi:10.1371/journal.ppat.1002940
   PubMed Web of Science ®Google Scholar
• DoleželJGreilhuberJSudaJ. 2007. Estimation of nuclear DNA content in plants using flow cytometry. Nat Protoc 2:2233–2244, doi:10.1038/nprot.2007.310
   PubMed Web of Science ®Google Scholar
• ErwinDCRibeiroOK. 1996. Phytophthora Diseases Worldwide. Saint Paul, Minnesota: American Phytopathological Society Press. 562 p.
   Google Scholar
• GossEMCardenasMEMyersKForbesGAFryWERestrepoSGrünwaldNJ. 2011. The plant pathogen Phytophthora andina emerged via hybridization of an unknown Phytophthora species and the Irish potato famine pathogen, P. infestans. PLoS One 6:e24543, doi:10.1371/journal.pone.0024543
   PubMed Web of Science ®Google Scholar
• GregoryT. 2005. Synergy between sequence and size in large-scale genomics. Nat Rev Genet 6:699–708, doi:10.1038/nrg1674
   PubMed Web of Science ®Google Scholar
• GriffithGWShawDS. 1998. Polymorphisms in Phytophthora infestans: four mitochondrial haplotypes are detected after PCR amplification of DNA from pure cultures or from host lesions. Appl Environ Microbiol 64:4007–4014.
   PubMed Web of Science ®Google Scholar
• HaasBJKamounSZodyMCJiangRHYHandsakerRECanoLMGrabherrMKodiraCDRaffaeleSTorto-AlaliboTBozkurtTOAh-FongAMVAlvaradoLAndersonVLArmstrongMRAvrovaABaxterLBeynonJBoevinkPCBollmannSRBosJIBBuloneVCaiGCakirCCarringtonJCChawnerMContiLCostanzoSEwanRFahlgrenNFischbachMaFugelstadJGilroyEMGnerreSGreenPJGrenville-BriggsLJGriffithJGrünwaldNJHornKHornerNRHuC-HHuitemaEJeongD-HJonesAMEJonesJDGJonesRWKarlssonEKKunjetiSGLamourKLiuZMaLMacleanDChibucosMCMcDonaldHMcWaltersJMeijerHJGMorganWMorrisPFMunroCaO’NeillKOspina-GiraldoMPinzónAPritchardLRamsahoyeBRenQRestrepoSRoySSadanandomASavidorASchornackSSchwartzDCSchumannUDSchwessingerBSeyerLSharpeTSilvarCSongJStudholmeDJSykesSThinesMvan de VondervoortPJIPhuntumartVWawraSWeideRWinJYoungCZhouSFryWMeyersBCvan WestPRistainoJGoversFBirchPRJWhissonSCJudelsonHSNusbaumC. 2009. Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature 461:393–398, doi:10.1038/nature08358
   PubMed Web of Science ®Google Scholar
• HamedBHGisiU. 2013. Generation of pathogenic F1 progeny from crosses of Phytophthora infestans isolates differing in ploidy. Plant Pathol 62:708–718, doi:10.1111/j.1365-3059.2012.02655.x
   Google Scholar
• HansenEMReeserPWSuttonW. 2012. Phytophthora borealis and Phytophthora riparia, new species in Phytophthora ITS Clade 6. Mycologia 104:1133–1142, doi:10.3852/11-349
   PubMed Web of Science ®Google Scholar
• HussonCAguayoJRevellinCFreyPIoosRMarçaisB. 2015. Evidence for homoploid speciation in Phytophthora alni supports taxonomic reclassification in this species complex. Fungal Genet Biol 77:12–21, doi:10.1016/j.fgb.2015.02.013
   PubMed Web of Science ®Google Scholar
• JungTStukelyMJCHardyGEStJWhiteDPaapTDunstanWABurgessTI. 2011. Multiple new Phytophthora species from ITS Clade 6 associated with natural ecosystems in Australia: evolutionary and ecological implications. Persoonia 26:13–39, doi:10.3767/003158511X557577
   PubMed Web of Science ®Google Scholar
• LeonbergerAJSpeersCRuhlGCreswellTBeckermanJL. 2012. A Survey of Phytophthora spp. in midwest nurseries, greenhouses, and landscapes. Plant Dis 97:635–640, doi:10.1094/PDIS-07-12-0689-RE
   Google Scholar
• LiYCookeDELvan der LeeTJacobsenE. 2013. Efficient multiplex simple sequence repeat genotyping of the oomycete plant pathogen Phytophthora infestans. J Microbiol Methods 92:316–322, doi:10.1016/j.mimet.2012.11.021
   PubMed Web of Science ®Google Scholar
• LiYZhouQQianKvan der LeeTHuangS. 2015. Successful asexual lineages of the Irish potato famine pathogen are triploid. bioRxiv, doi:10.1101/024596
   Google Scholar
• Man in ’t VeldWAde CockAWSummerbellRC. 2007. Natural hybrids of resident and introduced Phytophthora species proliferating on multiple new hosts. Eur J Plant Pathol 117:25–33, doi:10.1007/s10658-006-9065-9
   Google Scholar
• Man in ’t VeldWARosendahlKCHongC. 2012. Phytophthora xserendipita sp. nov. and P. ×pelgrandis, two destructive pathogens generated by natural hybridization. Mycologia 104:1390–1396, doi:10.3852/11-272
   Web of Science ®Google Scholar
• OlivaR. 2009. Occurrence of sympatric Phytophthora species in the highland of Ecuador [doctoral dissertation]. Zurich: Swiss Federal Institute of Technology. 142 p.
   Google Scholar
• OlivaRKroonLChaconGFlierWRistainoJForbesG. 2010. Phytophthora andina sp nov. a newly identified heterothallic pathogen of solanaceous hosts in the Andean highlands. Plant Pathol 59:613–625, doi:10.1111/j.1365-3059.2010.02287.x
   Google Scholar
• OttoSWhittonJ. 2000. Polyploid incidence and evolution. Annu Rev Genet 34:401–437, doi:10.1146/annurev.genet.34.1.401
   PubMed Web of Science ®Google Scholar
• RaffaeleSFarrerRACanoLMStudholmeDJMacLeanDThinesMJiangRHYZodyMCKunjetiSGDonofrioNMMeyersBCNusbaumCKamounS. 2010. Genome evolution following host jumps in the Irish potato famine pathogen lineage. Science 330:1540–1543, doi:10.1126/science.1193070
   PubMed Web of Science ®Google Scholar
• RaffaeleSKamounS. 2012. Genome evolution in filamentous plant pathogens: why bigger can be better. Nat Rev Microbiol 10:417–430, doi:10.1038/nrmicro2790
   PubMed Web of Science ®Google Scholar
• SansomeE. 1977. Polyploidy and induced gametangial formation in British isolates of Phytophthora infestans. J Gen Microbiol 99:311–316, doi:10.1099/00221287-99-2-311
   Google Scholar
• SchardlCLCravenKD. 2003. Interspecific hybridization in plant-associated fungi and oomycetes: a review. Mol Ecol 12:2861–2873, doi:10.1046/j.1365-294X.2003.01965.x
   Web of Science ®Google Scholar
• TooleyPTherrienC. 1987. Cytophotometric determination of the nuclear DNA content of 23 Mexican and 18 non-Mexican isolates of Phytophthora infestans. Exp Mycol 11:19–26, doi:10.1016/0147-5975(87)90032-6
   Google Scholar
• TooleyPTherrienCRitchD. 1989. Mating type, race composition, nuclear DNA content, and isozyme analysis of Peruvian isolates of Phytophthora infestans. Phytopathology 79:478–481, doi:10.1094/Phyto-79-478
   Web of Science ®Google Scholar
• van der LeeTDeWitteIDrenthAAlfonsoCGoversF. 1997. AFLP linkage map of the oomycete Phytophthora infestans. Fungal Genet Biol 21:278–291, doi:10.1006/fgbi.1997.0981
   PubMed Web of Science ®Google Scholar
• van der LeeTTestaARoboldAvan ’t KloosterJGoversF. 2004. High-density genetic linkage maps of Phytophthora infestans reveal trisomic progeny and chromosomal rearrangements. Genetics 167:1643–1661, doi:10.1534/genetics.104.029652
   Google Scholar
• VercauterenABoutetXD’hondtLVan BockstaeleEMaesMLeusLChandelierAHeungensK. 2011. Aberrant genome size and instability of Phytophthora ramorum oospore progenies. Fungal Genet Biol 48:537–543, doi:10.1016/j.fgb.2011.01.008
   Google Scholar
• YangXRichardsonPAHongC. 2014. Phytophthora ×stagnum nothosp. nov., a new hybrid from irrigation reservoirs at ornamental plant nurseries in Virginia. PLoS One 9:e103450, doi:10.1371/journal.pone.0103450
   Google Scholar