Multilocus, DNA-based phylogenetic analyses reveal three new species lineages in the Phellinus gabonensis–P. caribaeo-quercicola species complex, including P. amazonicus sp. nov.

Literature cited

• AmalfiMDecockC. 2013. Fomitiporia castilloi sp. nov. and evidence for multiples clades around F. apiahyna in Meso- and South America, representing potential species. Mycologia 105:873–887, doi:10.3852/11-423
   Web of Science ®Google Scholar
• AmalfiMDecockC. 2014. Fomitiporia expansa, an undescribed species from French Guiana. Cryptogam, Mycol 35: 73–85, doi:10.7872/crym.v35.iss1.2014.73
   Google Scholar
• AmalfiMRaymundoTValenzuelaRDecockC. 2012. Fomitiporia cupressicola sp. nov., a parasite on Cupressus arizonica, and additional unnamed clades in the southern USA and northern Mexico, determined by multilocus phylogenetic analyses. Mycologia 104:880–893, doi:10.3852/11-196
   Web of Science ®Google Scholar
• AmalfiMRobledoGDecockC. 2014. Fomitiporia baccharidis comb. nov., a little known species from high elevation Andean forests and its affinities within the Neotropical Fomitiporia lineages. Mycol Prog 13:1075–1087, doi:10.1007/s11557-014-0995-x
   Web of Science ®Google Scholar
• AmalfiMYombiyeniPDecockC. 2010. Fomitiporia in sub-Saharan Africa: morphology and multigene phylogenetic analysis support three new species from the Guineo-Congolian rainforest. Mycologia 102:1303–1317, doi:10.3852/09-083
   PubMed Web of Science ®Google Scholar
• BuchananPKRyvardenL. 2000. An annotated checklist of polypore-like fungi recorded from New Zealand. New Zeal J Bot 38:265–323, doi:10.1080/0028825X.2000.9512683
   Web of Science ®Google Scholar
• Campos-SantanaMAmalfiMRobledoGBorges da SilveiraRMDecockC. 2014. Fomitiporia neotropica, a new species from South America evidenced by multilocus phylogenetic analyses. Mycol Prog 13:601–615, doi:10.1007/s11557-013-0943-1
   Web of Science ®Google Scholar
• Campos-SantanaMRobledoGDecockCBorges da SilveiraRM. 2015. Diversity of the poroid Hymenochaetaceae (Basidiomycota) from the Atlantic Forest and Pampa in Southern Brazil. Cryptogam Mycol 36:43–78, doi:10.7872/crym.v36.iss1.2015.43
   Web of Science ®Google Scholar
• Campos-SantanaMSilveiraRMB. 2011. Phellinus gabonensis (Hymenochaetaceae, Agaricomycota): In: VII Congreso Latinoamericano de Micología, 2011, Costa Rica. Resúmenes y Programa Latino-Micología innovación y progreso VII Congreso Latinoamericano de Micología 1:71.
   Google Scholar
• CastresanaJ. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17:540–552, doi:10.1093/oxfordjournals.molbev.a026334
   PubMed Web of Science ®Google Scholar
• CornerEJH. 1991. Ad Polyporaceas VII. The xanthochroic polypores. Nova Hedw Beih 101:1–175, pl. 1, 2.
   Google Scholar
• CuiBKDayYC. 2008. Wood-rotting fungi in eastern China 2. A new species of Fomitiporia from Wanmulin Nature Reserve, Fujian Province. Mycotaxon 105:343–351.
   Web of Science ®Google Scholar
• CuiBKDecockC. 2013. Phellinus castanopsidis sp. nov. (Hymenochaetales) from Southern China, with preliminary phylogeny based on rDNA sequences. Mycol Prog 12:341–351, doi:10.1007/s11557-012-0839-5
   Web of Science ®Google Scholar
• CunninghamGH. 1963. The Thelephoraceae of Australia and New Zealand. Bull NZ Dep Sci Ind Res 145:1–359.
   Google Scholar
• CunninghamGH. 1965. Polyporaceae of New Zealand. Bull NZ Dep Sci Ind Res 64:1–304.
   Google Scholar
• DecockCAmalfiMRobledoGCastilloG. 2013. Phylloporia nouraguensis (Hymenochaetales, Basidiomycota), an undescribed species from the Neotropics. Cryptogamie Mycol 34:15–27, doi:10.782/crym.v34.iss1.2013.15
   Web of Science ®Google Scholar
• DecockCBitewACastilloG. 2005. Fomitiporia tenuis and Fomitiporia aethiopica (Basidiomycetes, Hymenochaetales), two undescribed species from the Ethiopian Highlands: taxonomy and phylogeny. Mycologia 97:124–132, doi:10.3852/mycologia.97.1.121
   Web of Science ®Google Scholar
• DecockCHerrera FigueroaSRobledoGCastilloG. 2006. Phellinus caribaeo-quercicola sp. nov., parasitic on Quercus cubana: taxonomy and preliminary phylogenetic relationships. Mycologia 98:265–274, doi:10.3852/mycologia.98.2.265
   Web of Science ®Google Scholar
• DecockCHerrera FigueroaSRobledoGCastilloG. 2007. Fomitiporia punctata (Basidiomycota, Hymenochaetales) and its presumed taxonomic synonyms in America: taxonomy and phylogeny of some species from tropical/subtropical areas. Mycologia 99:733–752, doi:10.3852/mycologia.99.5.733
   PubMed Web of Science ®Google Scholar
• de GranvilleJJ. 1986. Les formations végétales de la bande côtière de Guyane Française. In: Le littoral côtier guyanais, fragilité de l’environnement. 1er Congrès régional de l’environnement, Sepanguy, Cayenne. p 47–63.
   Google Scholar
• de GranvilleJJ. 1988. Phytogeographical characteristics of the Guianan forest. Taxon 37:578–594, doi:10.2307/1221101
   Google Scholar
• de GranvilleJJ. 2002. Milieux et formations végétales de Guyane. Acta Bot Gallica 149:319–337, doi:10.1080/12538078.2002.10515965
   Web of Science ®Google Scholar
• EvaHDGlinniAJanvierPBlair-MyersC. 1999. Vegetation map of tropical South America at 1 :5 000 000. Space Application Institute, Global Vegetation Monitoring Unit, TREES Publ. Series D:1–44.
   Google Scholar
• FischerM. 2002. A new wood-decaying basidiomycete species associated with esca of grapevine: Fomitiporia mediterranea (Hymenochaetales). Mycol Prog 1:315–324, doi:10.1007/s11557-006-0029-4
   Google Scholar
• FischerMBinderM. 2004. Species recognition, geographic distribution and host-pathogen relationships: a case study in a group of lignicolous Basidiomycetes, Phellinus s.l. Mycologia 96:799–811, doi:10.2307/3762113
   PubMed Web of Science ®Google Scholar
• FischerMEdwardsJCunningtonJHPascoeIG. 2005. Basidiomycetous pathogens on grapevine: a new species from Australia—Fomitiporia australiensis. Mycotaxon 92:85–96.
   Web of Science ®Google Scholar
• GilbertsonRLRyvardenL. 1987. North American Polypores. Part 2. Megasporoporia–Wrightoporia. Oslo, Norway: Fungiflora. 449 p.
   Google Scholar
• IganciJRVHeidenGMiottoSTSPenningtonRT. 2011. Campos de Cima da Serra: the Brazilian Subtropical Highland Grasslands show an unexpected level of plant endemism. Bot J Linn Soc 167:378–393, doi:10.1111/j.1095-8339.2011.01182.x
   Web of Science ®Google Scholar
• KirkPMCannonPFDavidJCStalpersJA. 2001. Ainsworth & Bisby’s Dictionary of the Fungi, 9th ed. Wallingford, UK: CABI Publishing. 655 p.
   Google Scholar
• KornerupAWanscherJH. 1981. Methuen handbook of colour. 3rd ed. London: Methuen. 282 p.
   Google Scholar
• LarsenMJCobb-PoulleLA. 1990. Phellinus (Hymenochaetaceae). Synopsis Fungorum 3, Oslo, Norway: Fungiflora. 206 p.
   Google Scholar
• LarssonKHParmastoEFischerMLangerENakasoneKKRedheadSA. 2006. Hymenochaetales: a molecular phylogeny for the hymenochaetoid clade. Mycologia 98:926–936, doi:10.3852/mycologia.98.6.926
   PubMed Web of Science ®Google Scholar
• LloydGC. 1915. Synopsis of the genus Fomes. Mycol Writ 4:209–288.
   Google Scholar
• LoweJL. 1957. Polyporaceae of North America. The genus Fomes. Syracuse, New York: State Univ. College of Forestry, Syracuse Univ. 97 p.
   Google Scholar
• MaddisonDMaddisonW. 2000. MacClade 4.0. Analysis of phylogeny and character evolution. Sunderland, Massachusetts: Sinauer Associates.
   Google Scholar
• MathenyPBWangZBinderMCurtisJMLimYWNilssonRHHughesKWPetersenRHHofstetterVAmmiratiJFSchochCLangerGEMcLaughlinDJWilsonAWCranePEFrøslevTGeZWKerriganRWSlotJCVellingaECLiangZLAimeMCBaroniTJFischerMHosakaKMatsuuraKSeidlMTVauraJHibbettDS. 2007. Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi). Mol Phylogenet Evol 43:430–451, doi:10.1016/j.ympev.2006.08.024
   PubMed Web of Science ®Google Scholar
• MurrillWA. 1907. (Agaricales) Polyporaceae. N Am Flora 9:1–72.
   Google Scholar
• NiemeläT. 1975. On Fennoscandian polypores. IV. Phellinus igniarius, P. nigricans and P. populicola n. sp. Ann Bot Fenn 12:93–122.
   Google Scholar
• PeelMCFinlaysonBLMcMahonTA. 2007. Updated world map of the Köppen-Geiger climate classification. Hydrol Earth Syst Sc 11:1633–1644, doi:10.5194
   Web of Science ®Google Scholar
• PieriMRivoireB. 2000. Le genre Phellinus. Quelques espèces rares ou critiques en France, avec une clé des espèces du genre Phellinus s.l. signalées en Europe occidentale. Bull Soc Mycol Fr 116:305–331.
   Google Scholar
• PosadaDCrandallKA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14:817–818, doi:10.1093/bioinformatics/14.9.817
   PubMed Web of Science ®Google Scholar
• PuillandreNLambertABrouilletSAchazG. 2012. ABGD, Automatic Barcode Gap Discovery for primary species delimitation. Mol Ecol 21:1864–1877, doi:10.1111/j.1365-294X.2011.05239.x
   PubMed Web of Science ®Google Scholar
• QuaedvliegWBinderMGroenewaldJZSummerellBACarnegieAJBurgessTICrousPW. 2014. Introducing the Consolidated Species Concept to resolve species in the Teratosphaeriaceae. Persoonia 33:1–40, doi:10.3767/003158514X681981
   PubMed Web of Science ®Google Scholar
• RambautADrummondAJ. 2007. Tracer 1.4. http://beast.bio.ed.ac.uk/Tracer).
   Google Scholar
• RehnerSABuckleyE. 2005. A Beauveria phylogeny inferred from nuclear ITS and EF1-a sequences: evidence for cryptic diversification and links to Cordyceps teleomorphs. Mycologia 97:84–98, doi:10.3852/mycologia.97.1.84
   PubMed Web of Science ®Google Scholar
• RizzoDMGieserPTBurdsallHH. 2003. Phellinus coronadensis: a new species from southern Arizona, USA. Mycologia 95:74–79, doi:10.2307/3761963
   Web of Science ®Google Scholar
• RobledoGUrcelayCRajchenbergM. 2003. New species causing decay on living Polylepis australis in Cordoba, central Argentina. Mycologia 95:347–353, doi:10.2307/3762046
   Google Scholar
• RonquistFTeslenkoMvan der MarkPAyresDDarlingAHōhnaSLargetBLiuLSuchardMAHuelsenbeckJP. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol 61:539–542, doi:10.1093/sysbio/sys029
   PubMed Web of Science ®Google Scholar
• RyvardenL. 1990. Type studies in the Polyporaceae – 22. Species described by C. G. Lloyd in Polyporus. Mycotaxon 38:83–102.
   Web of Science ®Google Scholar
• RyvardenL. 2004. Neotropical Polypores 1. Introduction, Ganodermataceae and Hymenochaetaceae. Syn Fung 19:1–229.
   Google Scholar
• RyvardenLJohansenI. 1980. A preliminary polypore flora of East Africa. Oslo: Fungiflora. 636 p.
   Google Scholar
• SimmonsMPPickettKMMiyaM. 2004. How meaningful are Bayesian support values? Mol Biol Evol 21:188–199, doi:10.1093/molbev/msh014
   PubMed Web of Science ®Google Scholar
• StamatakisAHooverPRougemontJ. 2008. A rapid bootstrap algorithm for the RAxML Web-Servers. Syst Biol 57:758–771, doi:10.1080/10635150802429642
   PubMed Web of Science ®Google Scholar
• SwoffordDL. 2003. PAUP* 4. Phylogenetic analysis using parsimony (*and other methods). Sunderland: Massachusetts. Sinauer Associates.
   Google Scholar
• TaylorJWGeiserDMJacobsonDJKrokenSKasugaTGeiserDMHibbettDSFisherMC. 2000. Phylogenetic species recognition and species concepts in fungi. Fungal Genet Biol 31:21–32, doi:10.1006/fgbi.2000.1228
   PubMed Web of Science ®Google Scholar
• TaylorJWTurnerEPringleADettmanJJohannessonH. 2006. Fungal species: thoughts on their recognition, maintenance, and selection. In: GaddGMWatkinsonSCDyerPS, eds. Fungi in the Environment. p 313–339.
   Google Scholar
• ThiersB. (continuously updated). Index Herbariorum: a global directory of public herbaria and associated staff. New York Botanical Garden’s Virtual Herbarium. http://sweetgum.nybg.org/ih/
   Google Scholar
• ThompsonJDGibsonTJPlewniakFJeanmouginFHigginsDG. 1997. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882, doi:10.1093/nar/25.24.4876
   PubMed Web of Science ®Google Scholar
• TianXMYuHYZhouLWDecockCVlasákJDaiYC. 2013. Phylogeny and taxonomy of the Inonotus linteus complex. Fungal Divers 58:159–169, doi:10.1007/s13225-012-0202-9
   Web of Science ®Google Scholar
• TomšovskýMSedlákPJankovskýL. 2010a. Species recognition and phylogenetic relationships of European Porodaedalea (Basidiomycota, Hymenochaetales). Mycol Prog 9:225–233, doi:10.1007/s11557-009-0628-y
   Web of Science ®Google Scholar
• TomšovskýMVampolaPSedlákPByrtusováZJankovskýL. 2010b. Delimitation of central and northern European species of the Phellinus ignarius group (Basidiomycota, Hymenochaetales) based on analysis of ITS and translation elongation factor 1 alpha DNA sequences. Mycol Prog 9:431–445, doi:10.1007/s11557-009-0653-x
   Web of Science ®Google Scholar
• ValenciaRConditRFosterRBRomolerouxKVilla MuñozGSvenningJCMagårdEBassMLososLCBalslevH. 2004. Yasuni forest Dynamics plot, Ecuador. In: LososECLeighJGilesE, eds. Tropical forest diversity and dynamism: findings from a large-scale plot network. Chicago: Univ. Chicago Press. p 609–628.
   Google Scholar
• VlasákJKoutJ. 2011. Pileate Fomitiporia species in the USA. New combinations Fomitiporia calkinsii and F. bakeri. Mycol Prog 10:445–452, doi:10.1007/s11557-010-0715-0
   Google Scholar
• VlasákJKoutJVlasák JrJRyvardenL. 2011. New records of polypores from southern Florida. Mycotaxon 118: 159–176, doi:10.5248/118.159
   Google Scholar
• VlasákJLiHJZhouLWDaiYC. 2013. A further study on Inonotus linteus complex (Hymenochaetales, Basidiomycota) in tropical America. Phytotaxa 124:25–36, doi:10.11646/phytotaxa.124.1.3
   Google Scholar
• WagnerTFischerM. 2002. Proceeding toward a natural classification of the worldwide taxa Phellinus s.l and Inonotus s.l. and phylogenetic relationship of allied genera. Mycologia 94:998–1016, doi:10.2307/3761866
   PubMed Web of Science ®Google Scholar
• WhiteTJBrunsTLeeSTaylorJW. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics: In: InnisMAGelfandDHSninskyJJWhiteTJ, eds. PCR Protocols: a guide to methods and applications. New York: Academic Press. p 315–322.
   Google Scholar
• YombiyeniPAmalfiMDouanla-MeliCDecockC. 2011. Poroid Hymenochaetaceae from Guineo-Congolian rainforest: Phellinus gabonensis sp. nov. from Gabon—taxonomy and phylogenetic relationships. Mycol Prog 10:351–362, doi:10.1007/s11557-010-0708-z
   Google Scholar
• YombiyeniPBaleziAAmalfiMDecockC. 2015. Hymenochaetaceae from the Guineo-Congolian rainforest: three new species of Phylloporia based on morphological, DNA sequences and ecological data. Mycologia 107:996–1011, doi:10.3852/14-298
   Web of Science ®Google Scholar
• ZhouLWVlasákJDecockCAssefaAStenlidJAbateDWuSHDaiYC. 2015. Global diversity and taxonomy of the Inonotus linteus complex (Hymenochaetales, Basidiomycota): Sanghuangporus gen. nov., Tropicoporus excentrodendri and T. guanacastensis gen. et spp. nov., and 17 new combinations. Fungal Divers 77:335–347 doi:10.1007/s13225-015-0335-8
   Google Scholar