15. References
- AHMADIAN, A; LUNDEBERG, J (2002) A brief history of genetic variation analysis. Bio Techniques 32: 1122–1124; 1126; 1128 passim.
- ALLEN, M F; BALL, B V (1995) Characterisation and serological relationships of strains of Kashmir bee virus. Annals of Applied Biology 126(3): 471–484. http://dx.doi.org/10.1111/j.1744–7348.1995.tb05382.x
- ALLEN, M F; BALL, B V; WHITE, R; ANTONIW, J F (1986) The detection of acute paralysis virus in Varroa jacobsoni by the use of a simple indirect ELISA. Journal of Apicultural Research 25(2): 100–105.
- ALTSCHUL, S F; GISH, W; MILLER, W; MEYERS, E W; LIPMAN, D J (1990) Basic local alignment search tool. Journal of Molecular Biology 215(3): 403–410. http://dx.doi.org/10.1016/S0022-2836(05)80360-2
- AMDIOUNI, H; MAUNULA, L; HAJJAMI, K; FAOUZI, A; SOUKRI, A; NOURLIL, J (2012) Recovery comparison of two virus concentration methods from wastewater using cell culture and real-time PCR. Current Microbiology 65(4): 432–437. http://dx.doi.org/10.1007/s00284-012-0174-8
- ANDERSON, D L; GIBBS, A J (1988) Inapparent virus infections and their interactions in pupae of the honey bee (Apis mellifera L.) in Australia. Journal of General Virology 69: 1617–1625. http://dx.doi.org/10.1099/0022-1317-69-7-1617
- ANDERSON, D L; GIBBS, A J (1989) Transpupal transmission of Kashmir bee virus and sacbrood virus in the honey bee (Apis mellifera). Annals of Applied Biology 114(1): 1–7. http://dx.doi.org/10.1111/j.1744–7348.1989.tb06781.x
- ANTÚNEZ, K; D'ALESSANDRO, B; CORBELLA, E; RAMALLO, G; ZUNINO, P (2006) Honey bee viruses in Uruguay. Journal of Invertebrate Pathology 91(1): 67–70. http://dx.doi.org/10.1016/jjip.2006.05.009
- ANTÚNEZ, K; D'ALESSANDRO, B; CORBELLA, E; ZUNINO, P (2005) Detection of chronic bee paralysis virus and acute bee paralysis virus in Uruguayan honey bees. Journal of Invertebrate Pathology 90(1): 69–72. http://dx.doi.org/10.1016/jjip.2005.07.001
- APFALTER, P; ASSADIAN, O; BLASI, F; BOMAN, J; GAYDOS, C A; KUNDI, M; MAKRISTATHIS, A; NEHR, M; ROTTER, M L; HIRSCHL, A M (2002) Reliability of nested PCR for detection of Chlamydia pneumoniae DNA in atheromas: results from a multicenter study applying standardized protocols. Journal of Clinical Microbiology 40(12): 4428–4434. http://dx.doi.org/10.1128/JCM.40.12.4428–4434.2002
- ARENS, M (1999) Methods for subtyping and molecular comparison of human viral genomes. Clinical Microbioly Reviews 12(4): 612–626.
- ARTHOFER, W; STEINER, F M; SCHLICK-STEINER, B C (2011) Rapid and cost-effective screening of newly identified microsatellite loci by high-resolution melting analysis. Molecular Genetics and Genomics 286(3–4): 225–235. http://dx.doi.org/10.1007/s00438-011-0641-0
- BAILEY, L (1965) Paralysis of the honey bee, Apis mellifera Linnaeus. Journal of Invertebrate Pathology 7(2): 132–140. http://dx.doi.org/10.1016/0022-2011(65)90024-8
- BAILEY, L (1967) Acute bee-paralysis virus in adult honey bees injected with sacbrood virus. Virology 33(2): 368. http://dx.doi.org/10.1016/0042-6822(67)90161-4
- BAILEY, L (1968) The multiplication of sacbrood virus in the adult honey bee. Virology 36(2): 312–313. http://dx.doi.org/10.1016/0042-6822(68)90151-7
- BAILEY, L (1976) Viruses attacking the honey bee. Advances in Virus Research 20: 271–304. http://dx.doi.org/10.1016/S0065-3527
- BAILEY, L; BALL, B V (1978) Apis iridescent virus and “Clustering disease” of Apis cerana. Journal of Invertebrate Pathology 31(3): 368–371. http://dx.doi.org/10.1016/0022-2011(78)90231-8
- BAILEY, L; BALL, B V (1991) Honey bee pathology (2nd Ed.). Academic Press; London, UK. 193 pp.
- BAILEY, L; BALL, B V; CARPENTER, J M (1980) Small virus like particles in honey bees associated with chronic paralysis virus and with a previously undescribed disease. Journal of General Virology 46: 149–155. http://dx.doi.org/10.1099/0022-1317-46-1-149
- BAILEY, L; BALL, B V; PERRY, J N (1981) The prevalence of viruses of honey bees in Britain. Annals of Applied Biology 97: 109–118. http://dx.doi.org/10.1111/j.1744–7348.1981.tb02999.x
- BAILEY, L; BALL, B V; PERRY, J N (1983a) Association of viruses with two protozoal pathogens of the honey bee. Annals of Applied Biology 103: 13–20. http://dx.doi.org/10.1111/j.1744–7348.1983.tb02735.x
- BAILEY, L; BALL, B V; PERRY, J N (1983b) Honey bee paralysis: Its natural spread and its diminished incidence in England and Wales. Journal of Apicultural Research 22(3): 191–195.
- BAILEY, L; BALL, B V; WOODS, R D (1976) An iridovirus from bees. Journal of General Virology 31(3): 459–461. http://dx.doi.org/10.1099/0022-1317-31-3-459
- BAILEY, L; CARPENTER, J M; WOODS, R D (1979) Egypt bee virus and Australian isolates of Kashmir bee virus. Journal of General Virology 43(3): 641–647. http://dx.doi.org/10.1099/0022-1317-43-3-641
- BAILEY, L; FERNANDO, E F W (1972) Effects of sacbrood virus on adult honey bees. Annals of Applied Biology 72: 27–35. http://dx.doi.org/10.1111/j.1744–7348.1972.tb01268.x
- BAILEY, L; GIBBS, A J (1964) Acute infection of bees with paralysis virus. Journal of Insect Pathology 6(4): 395–407.
- BAILEY, L; GIBBS, A J; WOODS, R D (1963) Two viruses from adult honey bees (Apis mellifera Linnaeus). Virology 21: 390–395. http://dx.doi.org/10.1016/0042-6822(63)90200-9
- BAILEY, L; MILNE, R G (1969) The multiplication regions and interaction of acute and chronic bee-paralysis viruses in adult honey bees. Journal of General Virology 4(1): 9–14. http://dx.doi.org/10.1099/0022-1317-4-1-9
- BAILEY, L; WOODS, R D (1974) Three previously undescribed viruses from the honey bee. Journal of General Virology 25: 175–186. http://dx.doi.org/10.1099/0022-1317-25-2-175
- BAILEY, L; WOODS, R D (1977) Two more small RNA viruses from honey bees and further observations on sacbrood and acute bee-paralysis viruses. Journal of General Virology 37: 175–182. http://dx.doi.org/10.1099/0022-1317-37-1-175
- BAKONYI, T; FARKAS, R; SZENDROI, A; DOBOS-KOVACS, M; RUSVAI, M (2002a) Detection of acute bee paralysis virus by RT-PCR in honey bee and Varroa destructor field samples: rapid screening of representative Hungarian apiaries. Apidologie 33(1): 63–74. http://dx.doi.org/10.1051/apido:2001004
- BAKONYI, T; GRABENSTEINER, E; KOLODZIEJEK, J; RUSVAI, M; TOPOLSKA, G; RITTER, W; NOWOTNY, N (2002b) Phylogenetic analysis of acute bee paralysis virus strains. Applied and Environmental Microbiology 68(12): 6446–6450. http://dx.doi.org/10.1128/AEM.68.12.6446–6450.2002
- BALL, B V (1985) Acute paralysis virus isolates from honey bee colonies infested with Varroa jacobsoni. Journal of Apicultural Research 24(2): 115–119.
- BALL, B V (1989) Varroa jacobsoni as a virus vector. In Cavalloro, R (Ed.). Present status of varroatosis in Europe and progress in the Varroa mite contro. EEC; Luxemburg. pp. 241–244.
- BALL, B V; ALLEN, M F (1988) The prevalence of pathogens in honey bee colonies infested with the parasitic mite Varroa jacobsoni. Annals of Applied Biology 113: 237–244. http://dx.doi.org/10.1111/j.1744–7348.1988.tb03300.x
- BALL, B V; OVERTON, H A; BUCK, K W (1985) Relationship between the multiplication of chronic bee paralysis virus and its associate particle. Journal of General Virology 66(7): 1423–1429. http://dx.doi.org/10.1099/0022-1317-66-7-1423
- BECKER, S; FRANCO, J R; SIMARRO, P P; STICH, A; ABEL, P M; STEVERDING, D (2004) Real-time PCR for detection of Trypanosoma brucei in human blood samples. Diagnostic Microbiology and Infectious Disease 50(3): 193–199. http://dx.doi.org/10.1016/j.diagmicrobio.2004.07.001 BELÁK, S; THORÉN, P; LEBLANC, N; VILJOEN, G (2009) Advances in viral disease diagnostic and molecular epidemiological technologies. Expert Reviews in Molecular Diagnostics 9(4): 367–381. http://dx.doi.org/10.1586/ERM.09.19
- BENJEDDOU, M; LEAT, N; ALLSOPP, M; DAVISON, S (2001) Detection of acute bee paralysis virus and black queen cell virus from honey bees by reverse transcriptase PCR. Applied and Environmental Microbiology 67(5): 2384–2387. http://dx.doi.org/10.1128/AEM.67.5.2384–2387.2001
- BENJEDDOU, M; LEAT, N; ALLSOPP, M; DAVISON, S (2002) Development of infectious transcripts and genome manipulation of Black queen-cell virus of honey bees. Journal of General Virology 83(12): 3139–3146.
- BERENYI, O; BAKONYI, T; DERAKHSHIFAR, I; KOGLBERGER, H; NOWOTNY, N (2006) Occurrence of six honey bee viruses in diseased Austrian apiaries. Applied and Environmental Microbiology 72: 2414–2420. http://dx.doi.org/10.1128/AEM.72A2414–2420.2006
- BERGEM, M; NORBERG, K; AAMODT, R M (2006) Long-term maintenance of in vitro cultured honey bee (Apis mellifera) embryonic cells. BMC Developmental Biology 6(17). http://dx.doi.org/10.1186/1471-213X-6-17
- BICKLE, P J; DOKSUM, K A (1981) An analysis of transformations revisited. Journal of the American Statistical Association 76(374): 296–311. http://dx.doi.org/10.1080/01621459.1981.10477649
- BIRCH, L; ENGLISH, C A; BURNS, M; KEER, J T (2004) Generic scheme for independent performance assessment in the molecular biology laboratory. Clinical Chemistry 50(9): 1553–1559. http://dx.doi.org/10.1373/clinchem.2003.029454
- BLANCHARD, P; SCHURR, F; OLIVIER, V; CELLE, O; ANTÚNEZ, K; BAKONYI, T; BERTHOUD, H; HAUBRUGE, E; HIGES, M; KASPRZAK, S; KOEGLBERGER, H; KRYGER, P; THIÉRY, R; RIBIÈRE, M (2009) Phylogenetic analysis of the RNA-dependent RNA polymerase (RdRp) and a predicted structural protein (pSP) of the Chronic bee paralysis virus (CBPV) isolated from various geographic regions. Virus Research 144(2): 334–338. http://dx.doi.org/10.1016/j.virusres.2009.04.025
- BLANCHARD, P; OLIVIER, V; ISCACHE, A L; CELLE O; SCHURR, F; LALLEMAND, P; RIBIÈRE, M (2008) Improvement of RT-PCR detection of chronic bee paralysis virus (CBPV) required by the description of genomic variability in French CBPV isolates. Journal of Invertebrate Pathology 97(2): 182–185. http://dx.doi.org/10.1016/jjip.2007.07.003
- BLANCHARD, P; REGNAULT, J; SCHURR, F; DUBOIS, E; RIBIÈRE, M (2012) Intra-laboratory validation of chronic bee paralysis virus quantitation using an accredited standardised real-time quantitative RT-PCR method. Journal of Virological Methods 180(1–2): 26–31. http://dx.doi.org/10.1016/j.jviromet.2011.12.005
- BLANCHARD, P; RIBIÈRE, M; CELLE, O; LALLEMAND, P; SCHURR, F; OLIVIER, V; ISCACHE, A L; FAUCON, J P (2007) Evaluation of a real-time two step RT-PCR assay for quantitation of Chronic bee paralysis virus (CBPV) genome in experimentally-infected bee tissues and in life stages of a symptomatic colony. Journal of Virological Methods 141: 7–13. http://dx.doi.org/10.1016/j.jviromet.2006.11.021
- BONCRISTIANI, H F; DI PRISCO, G; PETTIS, J S; HAMILTON, M; CHEN, Y P (2009) Molecular approaches to the analysis of deformed wing virus replication and pathogenesis in the honey bee, Apis mellifera. Virology Journal 6: 1–9. http://dx.doi.org/10.1186/1743-422X-6-221
- BOWEN-WALKER, P L; MARTIN, S J; GUNN, A (1999) The transmission of deformed wing virus between honey bees (Apis mellifera L.) by the ectoparasitic mite Varroa jacobsoni Oud. Journal of Invertebrate Pathology 73: 101–106. http://dx.doi.org/10.1006/jipa.1998.4807
- BOYER, J C; HAENNI, A L (1994) Infectious transcripts and cDNA clones of RNA viruses. Virology 198(2): 415–426. http://dx.doi.org/10.1006/viro.1994.1053
- BOX, G E P; COX, D R (1964) An analysis of transformations. Journal of the Royal Statistical Society B 26(2): 211–252. http://dx.doi.org/http://wwwjstor.org/stable/2984418
- BRUNETTO, M R; COLOMBATTO, P; BONINO, F (2009) Bio-mathematical models ofviral dynamics to tailor antiviral therapy in chronic viral hepatitis. World Journal of Gastroenterology 15(5): 531–537. http://dx.doi.org/10.3748/wjg.15.531
- BUSTIN, S A (2000) Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays. Journal of Molecular Endocrinology 25(2): 169–193. http://dx.doi.org/10.1677/jme.0.0250169
- BUSTIN, S A; BEAULIEU, J F; HUGGETT, J; JAGGI, J; KIBENGE, R; FSBOLSVIK, P A; PENNING, L C; TOEGEL, S (2010) MIQE précis: Practical implementation of minimum standard guidelines for fluorescence-based quantitative real-time PCR experiments. BMC Molecular Biology 11: e74. http://dx.doi.org/10.1186/1471-2199-11-74
- BUSTIN, S A; BENES, V; GARSON, J A; HELLEMANS, J; HUGGETT, J; KUBISTA, M; MUELLER, R; NOLAN, T; PFAFFL, M W; SHIPLEY, G L; VANDESOMPELE, J; WITTWER, C T (2009) The MIQE Guidelines: Minimum information for publication of quantitative Real-Time PCR experiments. Clinical Chemistry 55(4): 611–622. http://dx.doi.org/10.1373/clinchem.2008.112797
- BUSTIN, S A; NOLAN, T (2004) Pitfalls of quantitative real-time reverse-transcription polymerase chain reaction. Journal of Bimolecular Techniques 15(3): 155–166.
- CARRECK, N L; BALL, B V; MARTIN, S J (2010) The epidemiology of cloudy wing virus infections in honey bee colonies in the UK. Journal of Apicultural Research 49(1): 66–71. http://dx.doi.org/10.3896/IBRA.1.49.1.09
- CARRIÈRE, M; PÈNE, V; BREIMAN, A; CONTI, F; CHOUZENOUX, S; MEURS, E; ANDRIEU, M; JAFFRAY, P; GRIRA, L; SOUBRANE, O; SOGNI, P; CALMUS, Y; CHAUSSADE, S; ROSENBERG, A R; PODEVIN, P (2007) A novel, sensitive, and specific RT-PCR technique for quantitation of hepatitis C virus replication. Journal of Medical Virology 79:155–160. http://dx.doi.org/10.1002/jmv.20773
- CASADEVALL, A; PIROFSKI, L-A (1999) Host-pathogen interactions: Redefining the basic concepts of pathogenicity and virulence. Infection and Immunity 67(8): 3703–3713.
- CASADEVALL, A; PIROFSKI, L-A (2001) Host-pathogen interactions: Attributes of virulence. Journal of Infectious Diseases 184(3): 337–344. http://dx.doi.org/10.1086/322044
- CELLE, O; BLANCHARD, P; SCHURR, F; OLIVIER, V; COUGOULE, N; FAUCON, J P; RIBIÈRE, M (2008) Detection of chronic bee paralysis virus (CBPV) genome and RNA replication in various hosts: possible ways of spread. Virus Research 133: 280–284. http://dx.doi.org/10.1016/j.virusres.2007.12.011
- CHANTAWANNAKUL, P; WARD, L; BOONHAM, N; BROWN, M (2006) A scientific note on the detection of honey bee viruses using real-time PCR (TaqMan) in varroa mites collected from a Thai honey bee (Apis mellifera) apiary. Journal of Invertebrate Pathology 91 (1): 69–73. http://dx.doi.org/10.1016/jjip.2005.11.001
- CHEN, Y P; EVANS, J D; FELDLAUFER, M F (2006a) Horizontal and vertical transmission of viruses in the honey bee (Apis mellifera). Journal of Invertebrate Pathology 92: 152–159.
- CHEN, Y P; EVANS, J; HAMILTON, M; FELDLAUFER, M (2007) The influence of RNA integrity on the detection of honey bee viruses: molecular assessment of different sample storage methods. Journal of Apicultural Research 46(2): 81–87. http://dx.doi.org/10.3896/IBRA.1.46.2.03
- CHEN, Y P; HIGGINS, J A; FELDLAUFER, M F (2005a) Quantitative real-time reverse transcription-PCR analysis of deformed wing virus infection in the honey bee (Apis mellifera L.). Applied and Environmental Microbiology 71(1): 436–441. http://dx.doi.org/10.1128/AEM.71.1.436–441.2005
- CHEN, Y P; PETTIS, J S; COLLINS, A; FELDLAUFER, M F (2006b) Prevalence and transmission of honey bee viruses. Applied and Environmental Microbiology 72: 606–611.
- CHEN, Y P; PETTIS, J S; EVANS, J D; KRAMER, M; FELDLAUFER, M F (2004a) Transmission of Kashmir bee virus by the ectoparasitic mite, Varroa destructor. Apidologie 35: 441–448. http://dx.doi.org/10.1051/apido:2004031
- CHEN, Y P; PETTIS, J S; FELDLAUFER, M F (2005b) Detection of multiple viruses in queens of the honey bee Apis mellifera L. Journal of Invertebrate Pathology 90(2): 118–121. http://dx.doi.org/10.1016/j.jip.2005.08.005
- CHEN, Y P; SMITH, I B; COLLINS, A M; PETTIS, J S; FELDLAUFER, M F (2004b) Detection of deformed wing virus infection in honey bees, Apis mellifera L., in the United States. American Bee Journal 144: 557–559.
- CHEN, Y P; ZHAO, Y; HAMMOND, J; HSU, H T; EVANS, J; FELDLAUFER, M (2004c) Multiple virus infections in the honey bee and genome divergence of honey bee viruses. Journal of Invertebrate Pathology 87(2–3): 84–93. http://dx.doi.org/10.1016/j.jip.2004.07.005
- CHERNESKY, M; JANG, D; CHONG, S; SELLORS, J; MAHONY, J (2003) Impact of urine collection order on the ability of assays to identify Chlamydia trachomatis infections in men. Sexually Transmitted Diseases 30(4): 345–347.
- http://dx.doi.org/10.1097/00007435-200304000-00014
- CHUI, L; DREBOT, M; ANDONOV, A; PETRICH, A; GLUSHEK, M; MAHONY, J (2005) Comparison of 9 different PCR primers for the rapid detection of severe acute respiratory syndrome coronavirus using 2 RNA extraction methods. Diagnostic Microbiology and Infectious Diseases 53(1): 47–55. http://dx.doi.org/10.1016/j.diagmicrobio.2005.03.007
- CLARK, T B (1978) A filamentous virus of the honey bee. Journal of Invertebrate Pathology 32: 332–340. http://dx.doi.org/10.1016/0022-2011(78)90197-0
- COBEY, S W; TARPY, D R; WOYKE, J (2013) Standard methods for instrumental insemination of Apis mellifera queens. In V Dietemann; J D Ellis; P Neumann (Eds) The COLOSS BEEBOOK, Volume I: standard methods for Apis mellifera research. Journal of Apicultural Research 52(4): http://dx.doi.org/10.3896/IBRA.1.52.4.
- CORNMAN, S R; SCHATZ, M C; JOHNSTON, S J; CHEN, Y P; PETTIS, J; HUNT, G; BOURGEOIS, L; ELSIK, C; ANDERSON, D; GROZINGER, C M; EVANS, J D (2010) Genomic survey of the ectoparasitic mite Varroa destructor, a major pest of the honey bee Apis mellifera. BMC Genomics 11: 602. http://dx.doi.org/10.1186/1471-2164-11-602
- CORONA, M; HUGHES, K A; WEAVER, D B; ROBINSON, G E (2005) Gene expression patterns associated with queen honey bee longevity. Mechanisms of Ageing and Development 126(11): 1230–1238. http://dx.doi.org/10.1016/j.mad.2005.07.004
- COX, J L; HEYSE, J F; TUKEY, J W (2000) Efficacy estimates from parasite count data that include zero counts. Experimental Parasitology 96: 1–8. http://dx.doi.org/10.1006/expr.2000.4550
- COX-FOSTER, D L; CONLAN, S; HOLMES, E; PALACIOS, G; EVANS, J D; MORAN, N A; QUAN, P L; BRIESE, T; HORNIG, M; GEISER, D M; MARTINSON, V; VANENGELSDORP, D; KALKSTEIN, A L; DRYSDALE, A; HUI, J; SHAI, J; CUI, L; HUTCHISON, S K; SIMONS, J F; EGHOLM, M; PETTIS, J S; LIPKIN, W I (2007) A metagenomic survey of microbes in honey bee colony collapse disorder. Science 318: 283–287. http://dx.doi.org/10.1126/science.1146498
- CRAGGS, J K; BALL, J K; THOMSON, B J; IRVING, W L; GRABOWSKA, A M (2001) Development of a strand-specific RT-PCR based assay to detect the replicative form of hepatitis C virus RNA. Journal of Virological Methods 94(1–2): 111–120. http://dx.doi.org/10.1016/S0166-0934(01)00281-6
- CRAILSHEIM, K; BRODSCHNEIDER, R; AUPINEL, P; BEHRENS, D; GENERSCH, E; VOLLMANN, J; RIESSBERGER-GALLÉ, U (2013) Standard methods for artificial rearing of Apis mellifera larvae. In V Dietemann; J D Ellis; P Neumann (Eds) The COLOSS BEEBOOK, Volume I: standard methods for Apis mellifera research. Journal of Apicultural Research 52(1): http://dx.doi.org/10.3896/IBRA.1.52.1.05
- DAINAT, B; EVANS, J D; CHEN, Y P; NEUMANN, P (2011) Sampling and RNA quality for diagnosis of honey bee viruses using quantitative PCR. Journal of Virological Methods 174(1–2): 150–152. http://dx.doi.org/10.1016/j.jviromet.2011.03.029
- DAINAT, B; KEN, T; BERTHOUD, H; NEUMANN, P (2009) The ectoparasitic mite Tropilaelaps mercedesae (Acari, Laelapidae) as a vector of honey bee viruses. Insectes Sociaux. 56: 40–43. http://dx.doi.org/10.1007/s00040-008-1030-5
- DALL, D J (1987) Multiplication of Kashmir bee virus in pupae of the honey bee, Apis mellifera. Journal of Invertebrate Pathology 49 (3): 279–290. http://dx.doi.org/10.1016/0022-2011(87)90060-7
- DE MIRANDA, J R (2008) Diagnostic techniques for virus detection in honey bees. In Aubert, MFA; Ball, B V; Fries, I; Moritz, R F A; Milani, N; Bernardinelli, I (Eds). Virology and the honey bee. EEC Publications; Brussels, Belgium. pp. 121–232.
- DE MIRANDA, J R; CORDONI, G; BUDGE, G (2010a) The acute bee paralysis virus—Kashmir bee virus—Israeli acute paralysis virus complex. Journal of Invertebrate Pathology 103: S30–S47. http://dx.doi.org/10.1016/j.jip.2009.06.014
- DE MIRANDA, J R; CHEN, Y; RIBIÈRE, M; GAUTHIER, L (2011) Varroa and viruses. In Carreck, N L (Ed.). Varroa—still a problem in the 21stcentury. International Bee Research Association; Cardiff, UK. pp 11–31.
- DE MIRANDA, J R; DAINAT, B; LOCKE, B; CORDONI, G; BERTHOUD, H; GAUTHIER, L; NEUMANN, P; BUDGE, G E; BALL, B V; STOLTZ, D B (2010b) Genetic characterisation of slow paralysis virus of the honey bee (Apis mellifera L.). Journal of General Virology 91: 2524–2530. http://dx.doi.org/10.1099/vir.0.022434-0
- DE MIRANDA, J R; DREBOT, M; TYLER, S; SHEN, M; CAMERON, C E; STOLTZ, D B; CAMAZINE, S M (2004) Complete nucleotide sequence of Kashmir bee virus and comparison with acute bee paralysis virus. Journal of General Virology 85: 2263–2270. http://dx.doi.org/10.1099/vir.0.79990-0
- DE MIRANDA, J R; FRIES, I (2008) Venereal and vertical transmission of deformed wing virus in honey bees (Apis mellifera L.). Journal of Invertebrate Pathology 98: 184–189. http://dx.doi.org/10.1016/j.jip.2008.02.004
- DE MIRANDA, J R; GENERSCH, E (2010) Deformed wing virus. Journal of Invertebrate Pathology 103: S48–S61. http://dx.doi.org/10.1016/j.jip.2009.06.012
- DENHOLM, C H (1999) Inducible honey bee viruses associated with Varroa jacobsoni. PhD thesis, Keele University; UK. 225 pp.
- DE SMET, L; RAVOET, J; DE MIRANDA J R; WENSELEERS, T; MORITZ R F A; DE GRAAF D C (2012) BeeDoctor, A versatile MLPA-based diagnostic tool for screening bee viruses. PLoS-ONE 7(10): e47953. http://dx.doi.org/10.1371/journal.pone.0047953
- DIPRISCO, G; PENNACHCHIO, F; CAPRIO, E; BONCRISTIANI, H F; EVANS, J D; CHEN, Y P (2011) Varroa destructor is an effective vector of Israeli acute paralysis virus in the honey bee, Apis mellifera. Journal of General Virology 92: 151–155. http://dx.doi.org/10.1099/vir.0.023853-0
- EBERT, D; BULL, J J (2003) Challenging the trade-off model for the evolution of virulence: is virulence management feasible? Trends in Microbiology 11: 15–20. http://dx.doi.org/10.1016/S0966-842X
- EVANS, J D (2001) Genetic evidence for co-infection of honey bees by acute bee paralysis and Kashmir bee viruses. Journal of Invertebrate Pathology 78(4): 189–193. http://dx.doi.org/10.1006/jipa.2001.5066
- EVANS, J D (2004) Transcriptional immune responses by honey bee larvae during invasion by the bacterial pathogen, Paenibacillus larvae. Journal of Invertebrate Pathology 85(2): 105–111. http://dx.doi.org/10.1016/j.jip.2004.02.004
- EVANS, J D (2006) Beepath: An ordered quantitative-PCR array for exploring honey bee immunity and disease. Journal of Invertebrate Pathology 93(2): 135–139. http://dx.doi.org/10.1016/j.jip.2006.04.004
- EVANS, J D; SCHWARZ, R S; CHEN, Y P; BUDGE, G; CORNMAN, R S; DE LA RUA, P; DE MIRANDA, J R; FORET, S; FOSTER, L; GAUTHIER, L; GENERSCH, E; GISDER, S; JAROSCH, A; KUCHARSKI, R; LOPEZ, D; LUN, C M; MORITZ, R F A; MALESZKA, R; MUÑOZ, I; PINTO, M A (2013) Standard methodologies for molecular research in Apis mellifera. In V Dietemann; J D Ellis; P Neumann (Eds) The COLOSS BEEBOOK, Volume I: standard methods for Apis mellifera research. Journal of Apicultural Research 52(4): http://dx.doi.org/10.3896/IBRA.1.52.4.11
- EVANS, J D; HUNG, A C F (2000) Molecular phylogenetics and classification of honey bee viruses. Archives of Virology 145(10): 2015–2026. http://dx.doi.org/10.1007/s007050070037
- EVISON, S E F; ROBERTS, K E; LAURENSON, L; PIETRAVALLE, S; HUI, J; BIESMEIJER, J C; SMITH, J E; BUDGE, G E; HUGHES, W O H (2012) Pervasiveness of parasites in pollinators. PLoS ONE 7(1): e30641. http://dx.doi.org/10.1371/journal.pone.0030641
- EYER, M; CHEN, Y P; SCHAFER, M O; PETTIS, J S; NEUMANN, P (2009) Honey bee sacbrood virus infects adult small hive beetles, Aethina tumida (Coleoptera: Nitidulidae). Journal of Apicultural Research 48(4): 296–297. http://dx.doi.org/10.3896/IBRA.1.48.4.11
- FIEVET, J; TENTCHEVA, D; GAUTHIER, L; DE MIRANDA, J R; COUSSERANS, F; COLIN, M E; BERGOIN, M (2006) Localization of deformed wing virus infection in queen and drone Apis mellifera L. Virology Journal 3: e16. http://dx.doi.org/10.1186/1743-422X-3-16
- FIORINI, G S; CHIU, D T (2005) Disposable microfluidic devices: fabrication, function, and application. Biotechniques 38(3): 429–446. http://dx.doi.org/10.2144/05383RV02
- FORSGREN, E; DE MIRANDA, J R; ISAKSSON, M; WIE, S; FRIES, I (2009) Deformed wing virus associated with Tropilaelaps mercedesae infesting European honey bees (Apis mellifera). Experimental and Applied Acarology 47: 87–97. http://dx.doi.org/10.1007/s10493-008-9204-4
- FRIES, I; CAMAZINE, S (2001) Implications of horizontal and vertical pathogen transmission for honey bee epidemiology. Apidologie 32 (3): 199–214.
- FUJIYUKI, T; MATSUZAKA, E; NAKAOKA, T; TAKEUCHI, H; WAKAMOTO, A; OHKA, S; SEKIMIZU, K; NOMOTO, A; KUBO, T (2009) Distribution of Kakugo virus and its effects on the gene expression profile in the brain of the worker honey bee Apis mellifera L. Journal of Virology 83: 11560–11568. http://dx.doi.org/10.1128/JVI.00519-09
- FUJIYUKI, T; OHKA, S; TAKEUCHI, H; ONO, M; NOMOTO, A; KUBO, T (2006) Prevalence and phylogeny of Kakugo virus, a novel insect picorna-like virus that infects the honey bee (Apis mellifera L.), under various colony conditions. Journal of Virology 80: 11528–11538. http://dx.doi.org/10.1128/JVI.00754-06
- FUJIYUKI, T; TAKEUCHI, H; ONO, M; OHKA, S; SASAKI, T; NOMOTO, A; KUBO T (2004) Novel insect picorna-like virus identified in the brains of aggressive worker honey bees. Journal of Virology 78: 1093–1100. http://dx.doi.org/10.1128/JVI.78.3.1093–1100.2004
- GANTZER, C; MAUL, A; AUDIC, J M; SCHWARTZBROD, L (1998) Detection of infectious enteroviruses, enterovirus genomes, somatic coliphages, and Bacteroides fragilis phages in treated wastewater. Applied and Environmental Microbiology 64(11): 4307–4312.
- GARDNER, S N; KUCZMARSKI, T A; VITALIS, E A; SLEZAK, T R (2003) Limitations of TaqMan PCR for detecting divergent viral pathogens illustrated by hepatitis A, B, C and E viruses and human immunodeficiency virus. Journal of Clinical Microbiology 41(6): 2417–2427. http://dx.doi.org/10.1128/JCM.41.6.2417–2427.2003
- GAUTHIER, L; RAVALLEC, M; TOURNAIRE, M; COUSSERANS, F; BERGOIN, M; DAINAT, B; DE MIRANDA, J R (2011) Viruses associated with ovarian degeneration in Apis mellifera L. queens. PLoS Pathogens 6: e16217. http://dx.doi.org/10.1371/journal.pone.0016217
- GAUTHIER, L; TENTCHEVA, D; TOURNAIRE, M; DAINAT, B; COUSSERANS, F; COLIN, M E; BERGOIN, M (2007) Viral load estimation in asymptomatic honey bee colonies using the quantitative RT-PCR technique. Apidologie 38: 426–436. http://dx.doi.org/10.1051/apido:2007026
- GENERSCH, E (2005) Development of a rapid and sensitive RT-PCR method for the detection of deformed wing virus, a pathogen of the honey bee (Apis mellifera). Veterinary Journal 169(1): 121123. http://dx.doi.org/10.1016/j.tvjl.2004.01.004
- GENERSCH, E; GISDER, S; HEDTKE, K; HUNTER, W B; MÖCKEL, N; MÜLLER, U (2013) Standard methods for cell cultures in Apis mellifera research. In V Dietemann; J D Ellis; P Neumann (Eds) The COLOSS BEEBOOK, Volume I: standard methods for Apis mellifera research. Journal of Apicultural Research 52(1): http://dx.doi.org/10.3896/IBRA.1.52.1.02
- GILDOW, F E; D'ARCY, C J (1990) Cytopathology and experimental host range of Rhopalosiphum padi virus, a small isometric RNA virus infecting cereal grain aphids. Journal of Invertebrate Pathology 55(2): 245–257. http://dx.doi.org/10.1016/0022-2011(90)90060-J
- GISDER, S; AUMEIER, P; GENERSCH, E (2009) Deformed wing virus (DWV): viral load and replication in mites (Varroa destructor). Journal of General Virology 90: 463–467. http://dx.doi.org/10.1099/vir.0.005579-0
- GISDER, S; MOCKEL, N; LINDE, A; GENERSCH, E (2011) A cell culture model for Nosema ceranae and Nosema apis allows new insights into the life cycle of these important honey bee-pathogenic microsporidia. Environmental Microbiology 13(2): 404–413. http://dx.doi.org/10.1111/j.1462–2920.2010.02346.x
- GLOVER, R H; ADAMS, I P; BUDGE, G; WILKINS, S; BOONHAM, N (2011) Detection of honey bee (Apis mellifera) viruses with an oligonucleotide microarray. Journal of Invertebrate Pathology 107 (3): 216–219. http://dx.doi.org/10.1016/j.jip.2011.03.004
- GRABENSTEINER, E; BAKONYI, T; RITTER, W; PECHHACKER, H; NOWOTNY, N (2007) Development of a multiplex RT-PCR for the simultaneous detection of three viruses of the honey bee (Apis mellifera L.): acute bee paralysis virus, black queen cell virus and sacbrood virus. Journal of Invertebrate Pathology 94(3): 222–225. http://dx.doi.org/10.1016/j.jip.2006.11.006
- GRABENSTEINER, E; RITTER, W; CARTER, M J; DAVISON, S; PECHHACKER, H; KOLODZIEJEK, J; BOECKING, O; DERAKHSHIFAR, I; MOOSBECKHOFER, R; LICEK, E; NOWOTNY, N (2001) Sacbrood virus of the honey bee (Apis mellifera): rapid identification and phylogenetic analysis using reverse transcription -PCR. Clinical and Diagnostic Laboratory Immunology 8(1): 93–104. http://dx.doi.org/10.1128/CDLI8.1.93–104.2001
- GREEN, M R; SAMBROOK, J (2012) Molecular cloning: a laboratory manual (4th Ed.). Cold Spring Harbor Laboratory Press; Cold Spring Harbor, USA. 2028 pp.
- GUNJI, T; KATO, N; HIJIKATA, M; HAYASHI, K; SAITOH, S; SHIMOTOHNO, K (1994) Specific detection of positive and negative stranded hepatitis C viral RNA using chemical RNA modification. Archives of Virology 134(3–4): 293–302. http://dx.doi.org/10.1385/0-89603-521-2:465
- HARLOW, E; LANE D (1988) Antibodies: A laboratory manual. Cold Spring Harbor Laboratory Press; Cold Spring Harbor, New York, USA. 726 pp.
- HAUSER, S; WEBER, C; VETTER, G; STEVENS, M; BEUVE, M; LEMAIRE, O (2000) Improved detection and differentiation of poleroviruses infecting beet or rape by multiplex RT-PCR. Journal of Virological Methods 89(1–2): 11–21. http://dx.doi.org/10.1016/S0166-0934(00)00203-2
- HIGGINS, J A; NASARABADI, S; KARNS, J S; SHELTON, D R; COOPER, M; GBAKIMA, A; KOOPMAN, R P (2003) A handheld real time thermal cycler for bacterial pathogen detection. Biosensors and Bioelectronics 18(9): 1115–1123. Erratum in: Biosensors and Bioelectronics 20, 663–664. http://dx.doi.org/10.1016/S0956-5663(02)00252-X HIGHFIELD, A C; EL NAGAR, A; MACKINDER, L C M; NOËL, L M-L J; HALL, M J; MARTIN, S J; SCHROEDER, D C (2009) Deformed wing virus implicated in overwintering honey bee colony losses. Applied and Environmental Microbiology 75(22): 7212–7220. http://dx.doi.org/10.1128/AEM.02227-09
- HORSINGTON, J; ZHANG, Z (2007) Analysis of foot-and-mouth disease virus replication using strand-specific quantitative RT-PCR. Journal of Virological Methods 144(1–2): 149–155. http://dx.doi.org/10.1016/j.jviromet.2007.05.002
- HUMAN, H; BRODSCHNEIDER, R; DIETEMANN, V; DIVELY, G; ELLIS, J; FORSGREN, E; FRIES, I; HATJINA, F; HU, F-L; JAFFÉ, R; KÖHLER, A; PIRK, C W W; ROSE, R; STRAUSS, U; TANNER, G; TARPY, D R; VAN DER STEEN, J J M; VEJSNAElig;S, F; WILLIAMS, G R; ZHENG, H-Q (2013) Miscellaneous standard methods for Apis mellifera research. In V Dietemann; J D Ellis; P Neumann (Eds) The COLOSS BEEBOOK, Volume I: standard methods for Apis mellifera research. Journal of Apicultural Research 52(4): http://dx.doi.org/10.3896/IBRA.1.52.4.10
- HUNG, A C F (2000) PCR detection of Kashmir bee virus in honey bee excreta. Journal of Apicultural Research 39(3–4): 103–106.
- HUNG, A C F; SHIMANUKI, H (1999) A scientific note on the detection of Kashmir bee virus in individual honey bees and varroa mites. Apidologie 30(4): 353–354. http://dx.doi.org/10.1051/apido:19990414
- HUNG, A C F; BALL, B V; ADAMS, J R; SHIMANUKI, H; KNOX, D A (1996a) A scientific note on the detection of American strains of acute paralysis virus and Kashmir bee virus in dead bees in one US honey bee (Apis mellifera L.) colony. Apidologie 27: 55–56.
- HUNG, A C F; SHIMANUKI, H; KNOX, D A (1996b) Inapparent infection of acute bee paralysis virus and Kashmir bee virus in US honey bees. American Bee Journal 136: 874–876.
- HUNTER, W B (2010) Medium for development of bee cell cultures (Apis mellifera. Hymenoptera: Apidae). In Vitro Cellular & Developmental Biology-Animal 46(2): 83–86. http://dx.doi.org/10.1007/s11626-009-9246-x
- HUNTER, W; ELLIS, J; VANENGELSDORP, D; HAYES, J; WESTERVELT, D; GLICK, E; WILLIAMS, M; SELA, I; MAORI, E; PETTIS, J; COX-FOSTER, D; PALDI, N (2010) Large-scale field application of RNAi technology reducing Israeli acute paralysis virus disease in honey bees (Apis mellifera, Hymenoptera: Apidae). PLoS Pathogens 6: e1001160. http://dx.doi.org/10.1371journal.ppat.1001160
- IQBAL, J; MÜLLER, U (2007) Virus infection causes specific learning deficits in honey bee foragers. Proceedings of the Royal Society London B274: 1517–1521. http://dx.doi.org/10.1098/rspb.2007.0022
- JAKAB, G; DROZ, E; BRIGNETI, G; BAULCOMBE, D; MALNOË, P (1997) Infectious in vivo and in vitro transcripts from a full-length cDNA clone of PVY-N605, a Swiss necrotic isolate of potato virus Y. Journal of General Virology 78(12): 3141–3145.
- KITAGISHI, Y; OKUMURA, N; YOSHIDA, H; NISHIMURA, Y; TAKAHASHI, J; MATSUDA, S (2011) Long-term cultivation of in vitro Apis mellifera cells by gene transfer of human c-myc proto-oncogene. In Vitro Cellular and Developmental Biology-Animal 47 (7): 451–453. http://dx.doi.org/10.1007/s11626-011-9431-6
- KURATH, G; HEICK, J A; DODDS, J A (1993) RNase protection analyses show high genetic diversity among field isolates of satellite tobacco mosaic virus. Virology 194(1): 414–418. http://dx.doi.org/10.1006/viro.1993.1278
- KUKIELKA, D; SÁNCHEZ-VIZCAÍNO, J M (2008) A sensitive one-step real-time RT-PCR method for detection of deformed wing virus and black queen cell virus in honey bee Apis mellifera. Journal of Virological Methods 147: 275–281. http://dx.doi.org/10.1016/j.jviromet.2007.09.008
- KUKIELKA, D; SÁNCHEZ-VIZCAÍNO, J M (2009) One-step real-time quantitative PCR assays for the detection and field study of sacbrood honey bee and acute bee paralysis viruses. Journal of Virological Methods 161: 240–246. http://dx.doi.org/10.1016/j.jviromet.2009.06.014
- LANFORD, R E; CHAVEZ, D; CHISARI, F V; SUREAU, C (1995) Lack of detection of negative-strand hepatitis C virus RNA in peripheral blood mononuclear cells and other extrahepatic tissues by the highly strand-specific rTth reverse transcriptase PCR. Journal of Virology 69(12): 8079–8083.
- LANFORD, R E; SUREAU, C; JACOB, J R; WHITE, R; FUERST, T R (1994) Demonstration of in vitro infection of chimpanzee hepatocytes with hepatitis C virus using strand-specific RT/PCR. Virology 202(2): 606–614. http://dx.doi.org/10.1006/viro.1994.1381
- LANZI, G; DE MIRANDA, J R; BONIOTTI, M B; CAMERON, CE; LAVAZZA, A; CAPUCCI, L; CAMAZINE, S M; ROSSI, C (2006) Molecular and biological characterization of deformed wing virus of honey bees (Apis mellifera L.). Journal of Virology 80: 4998–5009. http://dx.doi.org/10.1128/JVI.80.10.4998–5009.2006
- LASKUS, T; RADKOWSKI, M; WANG, L F; VARGAS, H; RAKELA, J (1998) Detection of hepatitis G virus replication sites by using highly strand-specific Tth-based reverse transcriptase PCR. Journal of Virology 72(4): 3072–3075.
- LAUBSCHER, J M; VON WECHMAR, M B (1992) Influence of aphid lethal paralysis virus and Rhopalosiphum padi virus on aphid biology at different temperatures. Journal of Invertebrate Pathology 60(2): 134–140. http://dx.doi.org/10.1016/0022-2011(92)90086-J
- LAUBSCHER, J M; VON WECHMAR, M B (1993) Assessment of aphid lethal paralysis virus as an apparent population growth-limiting factor in grain aphids in the presence of other natural enemies. Biocontrol Science and Technology 3(4): 455–466. http://dx.doi.org/10.1080/09583159309355300
- LEAT, N; BALL, B V; GOVAN, V; DAVISON, S (2000) Analysis of the complete genome sequence of black queen-cell virus, a picorna-like virus of honey bees. Journal of General Virology 81(8): 2111–2119.
- LEE, P E; FURGALA, B (1967) Viruslike particles in adult honey bees (Apis mellifera L.) following injection with sacbrood virus. Virology 32: 11–17. http://dx.doi.org/10.1016/0042-6822(67)90247-4
- LI, J L; PENG, W J; WU, J; STRANGE, J P; BONCRISTIANI, H F; CHEN, Y P (2011) Cross-species infection of deformed wing virus poses a new threat to pollinator conservation. Journal of Economic Entomology 104: 732–739. http://dx.doi.org/10.1603/EC10355
- LIEPOLD, P; WIEDER, H; HILLEBRANDT, H; FRIEBEL, A; HARTWICH, G (2005) DNA-arrays with electrical detection: a label-free low cost technology for routine use in life sciences and diagnostics. Bioelectrochemistry 67(2): 143–150. http://dx.doi.org/10.1016/j.bioelechem.2004.08.004
- LIN, L; LIBBRECHT, L; VERBEECK, J; VERSLYPE, C; ROSKAMS, T; VAN PELT, J; VAN RANST, M; FEVERY, J (2009) Quantitation of replication of the HCV genome in human livers with end-stage cirrhosis by strand-specific real-time RT-PCR assays: methods and clinical relevance. Journal of Medical Virology 81(9): 1569–1575. http://dx.doi.org/10.1002/jmv.21510
- LOCKE, B; FORSGREN, E; FRIES, I; DE MIRANDA, J R (2012) Acaricide treatment affects viral dynamics in Varroa destructor- infested honey bee colonies via both host physiology and mite control. Applied and Environmental Microbiology 78: 227–235. http://dx.doi.org/10.1128/AEM.06094-11
- LOMMEL, S A; MORRIS, T J; PINNOCK, D E (1985) Characterization of nucleic acids associated with Arkansas bee virus. Intervirology 23: 199–207. http://dx.doi.org/10.1159/000149606
- MARMUR, J; DOTY, P (1959) Heterogeneity in deoxyribonucleic acids. 1. Dependence on composition of the configurational stability of deoxyribonucleic acids. Nature 183(4673): 1427–1429. http://dx.doi.org/10.1038/1831427a0
- MARMUR, J; DOTY, P (1962) Determination of base composition of deoxyribonucleic acid from 1st thermal denaturation temperature. Journal of Molecular Biology 5(1): 109–118. http://dx.doi.org/10.1016/S0022-2836(62)80066-7
- MAORI, E; LAVI, S; MOZES-KOCH, R; GANTMAN, Y; PERETZ, Y; EDELBAUM, O; TANNE, E; SELA, I (2007a) Isolation and characterization of Israeli acute paralysis virus, a dicistrovirus affecting honey bees in Israel: evidence for diversity due to intra-and inter-species recombination. Journal of General Virology 88: 3428–3438. http://dx.doi.org/10.1099/vir.0.83284-0
- MAORI, E; PALDI, N; SHAFIR, S; KALEV, H; TSUR, E; GLICK, E; SELA, I (2009) IAPV, a bee-affecting virus associated with Colony Collapse Disorder can be silenced by dsRNA ingestion. Insect Molecular Biology 18(1): 55–60.
- http://dx.doi.org/10.1111/j.1365–2583.2009.00847.x
- MAORI, E; TANNE, E; SELA, I (2007b) Reciprocal sequence exchange between non-retro viruses and hosts leading to the appearance of new host phenotypes. Virology 362(2): 342–349. http://dx.doi.org/10.1016/j.virol.2006.11.038
- MARTIN, S J; HIGHFIELD, A C; BRETTELL, L; VILLALOBOS, E M; BUDGE, G E; POWELL, M; NIKAIDO, S; SCHROEDER, D C (2012) Global honey bee viral landscape altered by a parasitic mite. Science 336: 1304–1306. http://dx.doi.org/10.1126/science.1220941
- MCCLELLAND, E E; BERNHARDT, P; CASADEVALL, A (2006) Estimating the relative contributions of virulence factors for pathogenic microbes. Infection and Immunity 74(3): 1500–1504. http://dx.doi.org/10.1128/IAI.74.3.1500–1504.2006
- McGUINESS, P H; BISHOP, G A; MCCAUGHAN, G W; TROWBRIDGE, R; GOWANS, E J (1994) False detection of negative-strand hepatitis C virus RNA. Lancet 343: 551–552. http://dx.doi.org/10.1016/S0140-6736(94)91509-1
- MEEUS, I; SMAGGHE, G; SIEDE, R; JANS, K; DE GRAAF, D C (2010) Multiplex RT-PCR with broad-range primers and an exogenous internal amplification control for the detection of honey bee viruses in bumble bees. Journal of Invertebrate Pathology 105: 200–2003. http://dx.doi.org/10.1016/j.jip.2010.06.012
- MINOR, P D (1985) Growth, assay and purification of picornaviruses. In Mahy, B W (Ed.). Virology, a practical approach. IRL Press; Oxford, UK. pp. 25–41.
- MOON, J S; DOMIER, L L; MCCOPPIN, N K; D'ARCY, C J; JIN, H (1998) Nucleotide sequence analysis shows that Rhopalosiphum padi virus is a member of a novel group of insect-infecting RNA viruses. Virology 243(1): 54–65. http://dx.doi.org/10.1006/viro.1998.9043
- MOORE, J; JIRONKIN, A; CHANDLER, D; BURROUGHS, N; EVANS, D J; RYABOV, E V (2011) Recombinants between deformed wing virus and Varroa destructor virus-1 may prevail in Varroa destructor-infested honey bee colonies. Journal of General Virology 92: 156161 http://dx.doi.org/10.1099/vir.0.025965-0
- NF EN ISO/IEC 17025 (2005) General requirements for the competence of testing and calibration laboratories. 40 pp.
- OIE (2010) Manual of diagnostic tests and vaccines for terrestrial animals In Chapter 1.1.1.4/5. Principles and methods of validation of diagnostic assay for infectious diseases. Adopted in May 2009.
- OLIVIER, V; BLANCHARD, P; CHAOUCH, S; LALLEMAND, P; SCHURR, F; CELLE, O; DUBOIS, E; TORDO, N; THIERY, R; HOULGATTE, R; RIBIÈRE, M (2008) Molecular characterization and phylogenetic analysis of chronic bee paralysis virus, a honey bee virus. Virus Research 132: 59–68. http://dx.doi.org/10.1016/j.virusres.2007.10.014
- ONGUS, J R (2006) Varroa destructor virus 1: A new picorna-like virus in varroa mites as well as honey bees. PhD thesis, Wageningen University, Netherlands. 132 pp.
- ONGUS, J R; PEETERS, D; BONMATIN, J M; BENGSCH, E; VLAK, J M; VAN OERS, M M (2004) Complete sequence of a picorna-like virus of the genus Iflavirus replicating in the mite Varroa destructor. Journal of General Virology 85: 3747–3755. http://dx.doi.org/10.1099/vir.0.80470-0
- ONGUS, J R; ROODE, E C; PLEIJ, C W A; VLAK, J M; VAN OERS, M M (2006) The 5' non-translated region of Varroa destructor virus 1 (genus Iflavirus): structure prediction and RES activity in Lymantria dispar cells. Journal of General Virology 87: 3397–3407. http://dx.doi.org/10.1099/vir.0.82122-0
- ONODERA, K (2007) Selection for 3'-end triplets for polymerase chain reaction primers. In Yuryev, A (Ed.). PCR primer design. Methods in Molecular Biology TM series #402. Humana Press; Totowa, New Jersey, USA. pp. 61–74.
- PALACIOS, G; HUI, J; QUAN, P L; KALKSTEIN, A; HONKAVUORI, K S; BUSSETTI, A V; CONLAN, S; EVANS, J; CHEN, Y P; VAN ENGELSDORP, D; EFRAT, H; PETTIS, J; COX-FOSTER, D; HOLMES, E C; BRIESE, T; LIPKIN, W I (2008) Genetic analysis of Israel acute paralysis virus: distinct clusters are circulating in the United States. Journal of Virology 82(13): 6209–6217. http://dx.doi.org/10.1128/JVI.00251-08
- PAPIN, J F; VAHRSON, W; DITTMER, D P (2004) SYBR green-based real-time quantitative PCR assay for detection of West Nile virus circumvents false-negative results due to strain variability. Journal of Clinical Microbiology 42(4): 1511–1518. http://dx.doi.org/10.1128/JCM.42.4.1511–1518.2004
- PENG, W J; LI, J L; BONCRISTIANI, H F; STRANGE, J P; HAMILTON, M; CHEN, Y P (2011) Host range expansion of honey bee black queen cell virus in the bumble bee, Bombus huntii. Apidologie 42: 650–658. http://dx.doi.org/10.1007/s13592-011-0061-5
- PEYREFITTE, C N; PASTORINO, B; BESSAUD, M; TOLOU, H J; COUISSINIER-PARIS, P (2003) Evidence for in vitro falsely-primed cDNAs that prevent specific detection of virus negative strand RNAs in dengue-infected cells: improvement by tagged RT-PCR. Journal of Virological Methods 113(1): 19–28. http://dx.doi.org/10.1016/S0166-0934(03)00218-0
- PFAFFL, M W; HAGELEIT, M (2001) Validities of mRNA quantification using recombinant RNA and recombinant DNA external calibration curves in real-time RT-PCR. Biotechnology Letters 23(4): 275–282. http://dx.doi.org/10.1023/A:1005658330108
- PIRK, C W W; DE MIRANDA, J R; FRIES, I; KRAMER, M; PAXTON, R; MURRAY, T; NAZZI, F; SHUTLER, D; VAN DER STEEN, J J M; VAN DOOREMALEN, C (2013) Statistical guidelines for Apis mellifera research. In V Dietemann; J D Ellis; P Neumann (Eds) The COLOSS BEEBOOK, Volume I: standard methods for Apis mellifera research. Journal of Apicultural Research 52(4): http://dx.doi.org/10.3896/IBRA.1.52.4.13
- PIROFSKI, L A; CASADEVALL, A (2012) Q & A: What is a pathogen? A question that begs the point. BMC Biology 10: e6. http://www.biomedcentral.com/1741-7007/10/6
- PLASKON, N E; ADELMAN, Z N; MYLES, K M (2009) Accurate strand- specific quantification of viral RNA. PLoS ONE 4(10): e7468. http://dx.doi.org/10.1371/journal.pone.0007468
- PURCELL, M K; HART, S A; KURATH, G; WINTON, J R (2006) Strand-specific, real-time RT-PCR assays for quantification of genomic and positive-sense RNAs of the fish rhabdovirus, infectious hematopoietic necrosis virus. Journal of Virological Methods 132(1–2): 18–24. http://dx.doi.org/10.1016/j.jviromet.2005.08.017
- RACANIELLO, V; BALTIMORE, D (1981) Cloned poliovirus complementary DNA is infectious in mammalian cells. Science 214 (4523): 916–919. http://dx.doi.org/10.1126/science.6272391
- RADONIĆ, A; THULKE, S; MACKAY, I M; LANDT, O; SIEGERT, W; NITSCHE, A (2004) Guideline to reference gene selection for quantitative real-time PCR. Biochemical and Biophysical Research Communications 313(4): 856–862. http://dx.doi.org/10.1016/j.bbrc.2003.11.177
- RENSEN, G; SMITH, W; RUZANTE, J; SAWYER, M; OSBURN, B; CULLOR, J (2005) Development and evaluation of a real-time fluorescent polymerase chain reaction assay for the detection of bovine contaminates in cattle feed. Foodborne Pathogens and Disease 2(2): 152–159. http://dx.doi.org/10.1089/fpd.2005.2.152
- RHODES, E R; HAMILTON, D W; SEE, M J; WYMER, L (2011) Evaluation of hollow-fiber ultrafiltration primary concentration of pathogens and secondary concentration of viruses from water. Journal of Virological Methods 176(1–2): 38–45. http://dx.doi.org/10.1016/j.jviromet.2011.05.031
- RIBIÈRE, M; BALL, B V; AUBERT, M F A (2008) Natural history and geographic distribution of honey bee viruses. In Aubert, M F A; Ball, B V; Fries, I; Morritz, R F A; Milani, N; Bernardinelli, I (Eds). Virology and the honey bee. EEC Publications; Brussels, Belgium. pp. 15–84.
- RIBIÈRE, M; FAUCON, J P; PÉPIN, M (2000) Detection of chronic honey bee (Apis mellifera L.) paralysis virus infection: application to a field survey. Apidologie 31(5): 567–577. http://dx.doi.org/10.1051/apido:2000147
- RIBIÈRE, M; OLIVIER, V; BLANCHARD, P (2010) Chronic bee paralysis virus. A disease and a virus like no other? Journal of Invertebrate Pathology 103: S120–S131. http://dx.doi.org/10.1016/j.jip.2009.06.013
- RIBIÈRE, M; TRIBOULOT, C; MATHIEU, L; AURIÈRES, C; FAUCON, J P; PÉPIN, M (2002) Molecular diagnosis of chronic bee paralysis virus infection. Apidologie 33(3): 339–351. http://dx.doi.org/10.1051/apido:2002020
- RODRIGUEZ, M A; CHEN, Y; CRAIGO, J K; CHATTERJEE, R; RATNER, D; TATSUMI, M; ROY, P; NEOGI, D; GUPTA, P (2006) Construction and characterization of an infectious molecular clone of HIV-1 subtype A of Indian origin. Virology 345(2): 328–336. http://dx.doi.org/10.1016/j.virol.2005.09.053
- RORTAIS, A; TENTCHEVA, D; PAPACHRISTOFOROU, A; GAUTHIER, L; ARNOLD, G; COLIN, M E; BERGOIN, M (2006) Deformed wing virus is not related to honey bees' aggressiveness. Virology Journal 3: e61. http://dx.doi.org/10.1186/1743-422X-3-61
- RUNCKEL, C; FLENNIKEN, M L; ENGEL, J C; RUBY, J G; GANEM, D; ANDINO, R; DERISI, J L (2011) Temporal analysis of the honey bee microbiome reveals four novel viruses and seasonal prevalence of known viruses, nosema, and crithidia. PloS One 6 (6): e20656. http://dx.doi.org/10.1371/journal.pone.0020656
- SAGE, L (2004) Protein biochips go high tech. Analytical Chemistry 76(7): 137A–142A. http://dx.doi.org/10.1021/ac0415408
- SANTALUCIA, J (2007) Physical principles and visual-OMP software for optimal PCR design. In Yuryev, A (Ed.). PCR primer design. Methods in Molecular Biology™ series #402. Humana Press; Totowa, New Jersey, USA. pp. 3–33.
- SCHAAD, N W; FREDERICK, R D; SHAW, J; SCHNEIDER, W L; HICKSON, R; PETRILLO, M D; LUSTER, D G (2003) Advances in molecular-based diagnostics in meeting crop biosecurity and phytosanitary issues. Annual Review of Phytopathology 41: 305324. http://dx.doi.org/10.1146/annurev.phyto.41.052002.095435
- SHAH, K S; EVANS, E C; PIZZORNO, M C (2009) Localization of deformed wing virus (DWV) in the brains of the honey bee, Apis mellifera Linnaeus. Virology Journal 6: e182. http://dx.doi.org/10.L1186/1743-422X-6-182
- SHEN, M Q; CUI, L W; OSTIGUY, N; COX-FOSTER, D (2005a) Intricate transmission routes and interactions between picorna-like viruses (Kashmir bee virus and sacbrood virus) with the honey bee host and the parasitic varroa mite. Journal of General Virology 86(8): 2281–2289. http://dx.doi.org/10.1099/vir.0.80824-0
- SHEN, M Q; YANG, X L; COX-FOSTER, D; CUI, L W (2005b) The role of varroa mites in infections of Kashmir bee virus (KBV) and deformed wing virus (DWV) in honey bees. Virology 342:141–149. http://dx.doi.org/10.1016/j.virol.2005.07.012
- SIEDE, R; BÜCHLER, R (2003) Symptomatische befall von drohnenbrut mit dem black queen cell virus auf hessischen bienenständen. Berliner und Münchener Tierärztliche Wochenschrift 116: 130–133.
- SIEDE, R; BÜCHLER, R (2006) Spatial distribution patterns of acute bee paralysis virus, black queen cell virus and sacbrood virus in Hesse, Germany. Wiener Tierärztliche Monatsschrift 93(4): 90–93.
- SIEDE, R; DERAKHSHIFAR, I; OTTEN, C; BERÉNYI, O; BAKONYI, T; KÖGLBERGER, H; BÜCHLER, R (2005) Prevalence of Kashmir bee virus in central Europe. Journal of Apicultural Research 44(3): 129. http://dx.doi.org/10.3896/IBRA.L44.3.09
- SINGH, R; LEVITT, A L; RAJOTTE, E G; HOLMES, E C; OSTIGUY, N; VANENGELSDORP, D; LIPKIN, W I; DEPAMPHILIS, C W; TOTH, A L; COX-FOSTER, D L (2010) RNA viruses in hymenopteran pollinators: evidence of inter-taxa virus transmission via pollen and potential impact on non-Apis hymenopteran species. PLoS ONE 5: e14357. http://dx.doi.org/10.1371/journal.pone.0014357
- STACH, J E; BATHE, S; CLAPP, J P; BURNS, R G (2001) PCR-SSCP comparison of 16S rDNA sequence diversity in soil DNA obtained using different isolation and purification methods. FEMS Microbiology Ecology 36(2–3): 139–151. http://dx.doi.org/10.1111/j.1574–6941.2001.tb00834.x
- STÅHLBERG, A; HÅKANSSON, J; XIAN, X; SEMB, H; KUBISTA, M (2004a) Properties of the reverse transcription reaction in mRNA quantification. Clinical Chemistry 50(3): 509–515. http://dx.doi.org/10.1373/clinchem.2003.026161
- STÅHLBERG, A; KUBISTA, M; PFAFFL, M (2004b) Comparison of reverse transcriptases in gene expression analysis. Clinical Chemistry 50(9): 1678–1680. http://dx.doi.org/10.1373/clinchem.2004.035469
- STOLTZ, D; SHEN, X R; BOGGIS, C; SISSON, G (1995) Molecular diagnosis of Kashmir bee virus infection. Journal of Apicultural Research 34(3): 153–160.
- SUMPTER, D J T; MARTIN, S J (2004) The dynamics of virus epidemics in varroa-infested honey bee colonies. Journal of Animal Ecology 73: 51–63. http://dx.doi.org/10.1111/j.1365–2656.2004.00776.x
- TANIGUCHI, T; PALMIERI, M; WEISSMANN, C (1978) A Qbeta DNA- containing hybrid plasmid giving rise to Qbeta phage formation in the bacterial host. Annales de Microbiologie 129B(4): 535–536.
- TENTCHEVA, D; GAUTHIER, L; BAGNY, L; FIEVET, J; DAINAT, B; COUSSERANS, F; COLIN, M E; BERGOIN, M (2006) Comparative analysis of deformed wing virus (DWV) RNA in Apis mellifera and Varroa destructor. Apidologie 37: 41–50. http://dx.doi.org/10.1051/apido:2005057
- TENTCHEVA, D; GAUTHIER, L; JOUVE, S; CANABADY-ROCHELLE, L; DAINAT, B; COUSSERANS, F; COLIN, M E; BALL, B V; BERGOIN, M (2004a) Polymerase chain reaction detection of deformed wing virus (DWV) in Apis mellifera and Varroa destructor. Apidologie 35 (4): 431–440. http://dx.doi.org/10.1051/apido:2004021
- TENTCHEVA, D; GAUTHIER, L; ZAPPULLA, N; DAINAT, B; COUSSERANS, F; COLIN, M E; BERGOIN, M (2004b) Prevalence and seasonal variations of six bee viruses in Apis mellifera L. and Varroa destructor mite populations in France. Applied and Environmental Microbiology 70: 7185–7191. http://dx.doi.org/10.1128/AEM.70.12.7185–7191.2004
- TERIO, V; MARTELLA, V; CAMERO, M; DECARO, N; TESTINI, G; BONERBA, E; TANTILLO, G; BUONAVOGLIA, C (2008) Detection of a honey bee iflavirus with intermediate characteristics between kakugo virus and deformed wing virus. NewMicrobioiogica 31: 439–444.
- TODD, J H; DE MIRANDA, J R; BALL, B V (2007) Incidence and molecular characterization of viruses found in dying New Zealand honey bee (Apis mellifera) colonies infested with Varroa destructor. Apidologie 38: 354–367. http://dx.doi.org/10.1051/apido:2007021
- TOPLEY, E; DAVISON, S; LEAT, N; BENJEDDOU, M (2005) Detection of three honey bee viruses simultaneously by a single Multiplex Reverse Transcriptase PCR. African Journal of Biotechnology 4(8): 763–767.
- VALENTINE-THON, E; VAN LOON, A M; SCHIRM, J; REID, J; KLAPPER, P E; CLEATOR, G M (2001) European proficiency testing program for molecular detection and quantitation of hepatitis B virus DNA. Journal of Clinical Microbiology 39(12): 4407–4412. http://dx.doi.org/10.1128/JCM.39.12.4407–4412.2001
- VAN DER STEEN, J J M; CORNELISSEN, B; DONDERS, J; BLACQUIÈRE, T; VAN DOOREMALEN, C (2012) How honey bees of successive age classes are distributed over a one storey, ten frames hive. Journal of Apicultural Research 51(2): 174–178. http://dx.doi.org/10.3896/IBRA.1.51.2.05
- VAN DER ZEE, R; GRAY, A; HOLZMANN, C; PISA, L; BRODSCHNEIDER, R; CHLEBO, R; COFFEY, M F; KENCE, A; KRISTIANSEN, P; MUTINELLI, F; NGUYEN, B K; ADJLANE, N; PETERSON, M; SOROKER, V; TOPOLSKA, G; VEJSNÆS, F; WILKINS, S (2012) Standard survey methods for estimating estimating colony losses and explanatory risk factors in Apis mellifera. In V Dietemann; J D Ellis; P Neumann (Eds) The COLOSS BEEBOOK, Volume I: Standard methods for Apis mellifera research. Journal of Apicultural Research 52(4): http://dx.doi.org/10.3896/IBRA.1.52.4.18
- VAN MUNSTER, M; DULLEMANS, A M; VERBEEK, M; VAN DEN HEUVEL, J F J M; CLÉRIVET, A; VAN DER WILK, F (2002) Sequence analysis and genomic organization of aphid lethal paralysis virus: a new member of the family Dicistroviridae. Journal of General Virology 83(12): 3131–3138.
- VANENGELSDORP, D; LENGERICH, E; SPLEEN, A; DAINAT, B; CRESSWELL, J; BAYLISS, K, NGUYEN, K B; SOROKER V; UNDERWOOD, R; HUMAN, H; LE CONTE, Y; SAEGERMAN, C (2013) Standard epidemiological methods to understand and improve Apis mellifera health. In V Dietemann; J D Ellis, P Neumann (Eds) The COLOSS BEEBOOK: Volume II: Standard methods for Apis mellifera pest and pathogen research. Journal of Apicultural Research 52(4): http://dx.doi.org/10.3896/IBRA.1.52.4.15
- VERKOOYEN, R P; NOORDHOEK, G T; KLAPPER, P E; REID, J; SCHIRM, J; CLEATOR, G M; IEVEN, M; HODDEVIK, G (2003) Reliability of nucleic acid amplification methods for detection of Chlamydia trachomatis in urine: results of the first international collaborative quality control study among 96 laboratories. Journal of Clinical Microbiology 41(7): 3013–3016. http://dx.doi.org/10.1128/JCM.4L7.3013–3016.2003
- WANG, T C; CHAO, M (2005) RNA recombination of hepatitis delta virus in natural mixed-genotype infection and transfected cultured cells. Journal of Virology 79(4): 2221–2229. http://dx.doi.org/10.1128/JVL79.4.221–2229.2005
- WEBBY, R; KALMAKOFF, J (1998) Sequence comparison of the major capsid protein from 18 diverse iridoviruses. Archives of Virology 143: 1949–1966. http://dx.doi.org/10.1007/s007050050432
- WEINSTEIN-TEXEIRA, E; CHEN, Y P; MESSAGE, D; PETTIS, J; EVANS, J D (2008) Virus infections in Brazilian honey bees. Journal of Invertebrate Pathology 99(1): 117–119. http://dx.doi.org/10.1016/j.jip.2008.03.014
- WHEELER, D E; BUCK, N; EVANS, J D (2006) Expression of insulin pathway genes during the period of caste determination in the honey bee, Apis mellifera. Insect Molecular Biology 15(5): 597602. http://dx.doi.org/10.1111/j.1365–2583.2006.00681.x
- WILLIAMS, G R; ALAUX, C; COSTA, C; CSÁKI, T; DOUBLET, V; EISENHARDT, D; FRIES, I; KUHN, R; MCMAHON, D P; MEDRZYCKI, P; MURRAY, T E; NATSOPOULOU, M E; NEUMANN, P; OLIVER, R; PAXTON, R J; PERNAL, S F; SHUTLER, D; TANNER, G; VAN DER STEEN, J J M; BRODSCHNEIDER, R (2013) Standard methods for maintaining adult Apis mellifera in cages under in vitro laboratory conditions. In V Dietemann; J D Ellis; P Neumann (Eds) The COLOSS BEEBOOK, Volume I: standard methods for Apis mellifera research. Journal of Apicultural Research 52(1): http://dx.doi.org/10.3896/IBRA.L52.L04
- WILLIAMS, G R; ROGERS, R E L; KALKSTEIN, A L; TAYLOR, B A; SHUTLER, D; OSTIGUY, N (2009) Deformed wing virus in western honey bees (Apis mellifera) from Atlantic Canada and the first description of an overtly-infected emerging queen. Journal of Invertebrate Pathology 101: 77–79. http://dx.doi.org/10.1016/j.jip.2009.01.004
- WITTWER C T; REED, G H; GUNDRY, C N; VANDERSTEEN, J G; PRYOR, R J (2003) High-resolution genotyping by amplicon melting analysis using LCGreen. Clinical Chemistry 49(6): 853860. http://dx.doi.org/10.1373/49.6.853
- WOLFE, R; CARLIN, J B (1999) Sample-size calculation for a log-transformed outcome measure. Controlled Clinical Trials 20: 547–554. http://dx.doi.org/10.1016/S0197-2456(99)00032-X
- YAÑEZ, O; JAFFÉ, R; JAROSCH, A; FRIES, I; MORITZ, R F A; PAXTON, R J; DE MIRANDA J R (2012) Deformed wing virus and drone mating in the honey bee (Apis mellifera): implications for sexual transmission of a major honey bee virus. Apidologie 43: 17–30. http://dx.doi.org/10.1007/s13592-011-0088-7
- YANG, X; COX-FOSTER, D L (2005) Impact of an ectoparasite on the immunity and pathology of an invertebrate: Evidence for host immunosuppression and viral amplification. Proceedings of the National Academy of Science of the United States of America 102: 7470–7475.
- http://dx.doi.org/10.1073/pnas.0501860102
- YUE, C; GENERSCH, E (2005) RT-PCR analysis of deformed wing virus in honey bees (Apis mellifera) and mites (Varroa destructor). Journal of General Virology 86: 3419–3424. http://dx.doi.org/10.1099/vir.0.81401-0
- YUE, C; SCHRÖDER, M; BIENEFELD, K; GENERSCH, E (2006) Detection of viral sequences in semen of honey bees (Apis mellifera): evidence for vertical transmission of viruses through drones. Journal of Invertebrate Pathology 92: 105–108. http://dx.doi.org/10.1016/j.jip.2006.03.001
- YUNUS, M A; CHUNG, L M W; CHAUDHRY, Y; BAILEY, D; GOODFELLOW, I (2010) Development of an optimized RNA-based murine norovirus reverse genetics system. Journal of Virological Methods 169(1): 112–118. http://dx.doi.org/10.1016/j.jviromet.2010.07.006
- YURYEV, A (2007) PCR primer design. Methods in Molecular Biology™ series #402. Humana Press; Totowa, New Jersey, USA. 431 pp.
- ZHANG, X; HE, S Y; EVANS, J D; PETTIS, J S; YIN, G F; CHEN, Y P (2012) New evidence that deformed wing virus and black queen cell virus are multi-host pathogens. Journal of Invertebrate Pathology 109: 156–159. http://dx.doi.org/10.1016/j.jip.2011.09.010
- ZIONI, N; SOROKER, V; CHEJANOVSKY, N (2011) Replication of Varroa destructor virus 1 (VDV-1) and a Varroa destructor virus 1- deformed wing virus recombinant (VDV-1-DWV) in the head of the honey bee. Virology 417(1): 106–112. http://dx.doi.org/10.1016/j.virol.2011.05.009