94
Views
3
CrossRef citations to date
0
Altmetric
Main Lecture

Identifying genes associated with quantitative traits in pigs: integrating quantitative and molecular approaches for meat quality

Pages 19-25 | Published online: 07 Mar 2016

References

  • Andersson-Eklund, L., Marklund, L., Lundstrom, K., Haley, C.S., Anderson, K., 1998. Mapping quantitative trait loci for carcass and meat traits in Wild Boar Large White intercross. J. Anim. Sci. 76:694–700.
  • Burt, D.W., Hocking, P.M., 2002. Mapping quantitative trait loci and identification of genes that control fatness in poultry. Proc. Nutr. Soc. 61:441–446.
  • Cagnazzo, M., Te Pas, M.F., Priem, J., de Wit, A.A., Pool, M.H., Davoli, R., Russo, V., 2006. Comparison of prenatal muscle tissue expression profiles of two pig breeds differing in muscle characteristics. J. Anim. Sci. 84:1–10.
  • Charlier, C., Coppieters, W., Rollin, F., Desmecht, D., Agerholm, J.S., Cambisano, N., Carta, E., Dardano, S., Dive, M., Fasquelle, C., Refnnet, J.C., Hanset, R., Hubin, X., Jorgensen, C., Karim, L., Kent, M., Harvey, K., Pearce, B.R., Simon, P., Tama, N., Nie, H., Vandeputte, S., Lien, S., Longeri, M., Refdholm, M., Harvey, R.J., Georges, M., 2008. Highly effective SNP-based association mapping and management of recessive defects in livestock. Nat. Genet. 40:449–454.
  • Cheung, V.G., Spielman, R.S., 2002. The genetics of variation in gene expression. Nat. Genet. 32:522-525.
  • Dekkers, J.C.M., Thomsen, H., Lee, H., Malek, M., Rothschild, M., 2003. Detection of imprinted QTL in the Berkshire x Yorkshire cross. Proc. 28th Nat. Swine Imp. Fed. Conf. And Ann. Mtg., De Moines, Iowa.
  • De Koning, D.J., Harlizius, B., Rattink, A.P., Groenen, M.A., Brascamp, E.W., Van Arendonk, J.A.M., 2001. Detection and characterization of quantitative trait loci for meat quality traits in pigs. J. Anim. Sci. 79:2812–2819.
  • Edwards, D.B., Ernst, C.W., Raney, N.E., Doumit, M.E., Hoge, M.D., Bates, R.O., 2008. Quantitative trait locus mapping in an F2 Duroc x Pietrain resource population: II. Carcass and meat quality traits. J. Anim. Sci. 86:254–266.
  • Frank, S.A., 2003. Genetic variation of polygenic characters and the evolution of genetic degeneracy. J. Evol. Biol. 16:138–142.
  • Groenen, M.A., Wahlberg, P., Foglio, M., Cheng, H.H., Megens, H.J., Crooijmans, R.P., Besnier, F., Lathrop, M., Muir, W.M., Wong, G.K., Gut, I., Andersson, L., 2009. A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate. Genome Res. 19:510–519.
  • Hu, Z.L., Dracheva, S., Jang, W.H., Maglott, D., Bastiaansen, J., Reecy, J., Rothschild, M., 2005. Pig QTLDB – A Pig QTL Database. Plant and Animal Genome XIII, San Diego, CA, p. 839.
  • Jennen, D.G.J., Brings, A.D., Liu, G., Juengst, H., Tholen, E., Jonas, E., Tesfaye, D., Schellander, K., Phatsara, C., 2007. Genetic aspects concerning drip loss and water-holding capacity of porcine meat. J. Anim. Breed. Genet. 124:2–11.
  • Kijas, J.W., Townley, D., Dalrymple, B.P., Heaton, M.P., Maddox, J.F., McGrath, A., Wilson, P., Ingersoll, R.G., McCulloch, R., McWilliam, S., Tang, D., McEwan, J., Cockett, N., Oddy, V.H., Nicholas, F.W., Raadsma, H., for the International Sheep Genomics Consortium. 2009. A Genome Wide Survey of SNP Variation Reveals the Genetic Structure of Sheep Breeds. PLoS ONE. 4(3):e4668.
  • Lin, C.S., Hsu, C.W., 2005. Differentially transcribed genes in skeletal muscle of Duroc and Taoyuan pigs. J. Anim. Sci. 833:2075–2086.
  • Liu, G., Jennen, D.G.J., Tholen, E., Juengst, H., Kleinwächter, T., Hölker, M., Tesfaye, D., Ün, C., Schreinemachers, H.J., Murani, E., Ponsuksili, S., Kim, J.J., Schellander, K., Wimmers, K., 2007. A genome scan reveals QTL for growth, fatness, leanness and meat quality in a Duroc-Pietrain resource population. Anim. Genet. 38:241–252.
  • Malek, M., Dekkers, J.C.M., Lee, H.K., Baas, T.J., Prusa, K., Huff-Lonergan, E., Rothschild, M.F., 2001. A molecular genome scan analysis to identify chromosomal regions influencing economic traits in the pig. II. Meat and muscle composition. Mamm. Genome. 12:6330–6363.
  • Muràni, E., Muràniovà, M., Ponsuksili, S., Schellander, K., Wimmers, K., 2007. Identification of genes differentially expressed during prenatal development of skeletal muscle in two pig breeds differing in muscularity. BMC Dev. Biol. 7:109.
  • Ponsuksili, S., Wimmers, K., Schmoll, F., Robic, A., Schellander, K., 2000. Porcine ESTs detected by differential display representing possible candidates for the trait “eye muscle area”. J. Anim. Breed. Genet. 117:25–35.
  • Ponsuksili, S., Murani, E., Schellander, K., Schwerin, M., Wimmers, K., 2005. Identification of functional candidate genes for body composition by expression analyses and evidencing impact by association analysis and mapping. Biochem. Biophys. Acta. 1730:31–40.
  • Ponsuksili, S., Murani, E., Phatsara, C., Jonas, E., Walz, C., Schwerin, M., Schellander, K., Wimmers, K., 2008a. Expression profiling of muscle reveals transcripts differentially expressed in muscle that affect water-holding capacity of pork. J. Agric. Food Chem. 56:10311–10317.
  • Ponsuksili, S., Jonas, E., Murani, E., Phatsara, C., Srikanchai, T., Walz, C., Schwerin, M., Schellander, K., Wimmers K., 2008b. Trait correlated expression combined with expression QTL analysis reveals biological pathways and candidate genes affecting water holding capacity of muscle. BMC Genomics. 9:367.
  • Rothschild, M.F., 2004. Porcine genomics delivers new tools and results this little piggy did more than just go to market. Genet. Res. 83:1–6.
  • Sato, S., Oyamada, Y., Atsuji, K., Nade, T., Sato, S., Kobayashi, E., Mitsuhashi, T., Nirasawa, K., Komatsuda, A., Saito, Y., Terai, S., Hayashi, T., Sugimoto, Y., 2003. Quantitative trait loci analysis for growth and carcass traits in a Meishan Duroc F2 resource population. J. Anim. Sci. 81:29338–2949.
  • Te Pas, M.F., de Wit, A.A., Priem, J., Cagnazzo, M., Davoli, R., Russo, V., Pool, M.H., 2005. Transcriptome expression profiles in prenatal pigs in relation to myogenesis. J. Muscle Res. Cell Motil. 26:157–1655.
  • Thomsen, H., Lee, H.K., Rothschild, M.F., Malek, M., Dekkers, J.C.M., 2004. Characterization of quantitative trait loci for growth and meat quality in a cross between commercial breeds of swine. J. Anim. Sci. 82:2213–2228.
  • Wimmers, K., Fiedler, I., Hardge, T., Murani, E., Schellander, K., Ponsuksili, S., 2006. QTL for microstructural and biophysical muscle properties and body composition in pigs. BMC Genetics. 7:15.
  • Zhu, M., Zhao, S., 2007. Candidate gene identification approach: progress and challenges. Int. J. Biol. Sci. 3:420–427.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.