Transgenic perennial biofuel feedstocks and strategies for bioconfinement

• Robertson GP, Dale VH, Doering OC et al. Sustainable biofuels redux. Science322(5898),49–50 (2008).
   PubMed Web of Science ®Google Scholar
• Energy Policy Act 2005. HR 6–109th Congress: Energy Policy Act of 2005. Pub. L 109–158 42 USC 15801 (2005).
   Google Scholar
• McLaughlin SB, de la Torre Ugarte DG, Garten CT et al. High-value renewable energy from prairie grasses. Environ. Sci. Tech.36(10),2122–2129 (2002).
   PubMed Web of Science ®Google Scholar
• McLaughlin SB, Adams Kszos L. Development of switchgrass (Panicum virgatum) as a bioenergy feedstock in the United States. Biomass Bioenergy28(6),515–535 (2005).
   Web of Science ®Google Scholar
• Morandini P, Salamini F. Plant biotechnology and breeding: allied for years to come. Trends Plant Sci.8(2),70–75 (2003).
   PubMed Web of Science ®Google Scholar
• Lynd LR, Laser MS, Bransby D et al. How biotech can transform biofuels. Nat. Biotechnol.26(2),169–172 (2008).
   PubMed Web of Science ®Google Scholar
• Gressel J. Transgenics are imperative for biofuel crops. Plant Sci.174(3),246–263 (2008).
   Web of Science ®Google Scholar
• Yuan JS, Tiller KH, Al-Ahmad H, Stewart NR, Stewart CN. Plants to power: bioenergy to fuel the future. Trends Plant Sci.13(8),421–429 (2008).
   PubMed Web of Science ®Google Scholar
• Sticklen MB. Plant genetic engineering for biofuel production: towards affordable cellulosic ethanol. Nat. Rev. Genet.9(6),433–443 (2008).
   PubMed Web of Science ®Google Scholar
• Tuskan GA, DiFazio S, Jansson S et al. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science313(5793),1596–1604 (2006).
   PubMed Web of Science ®Google Scholar
• Paterson AH, Bowers JE, Bruggmann R et al. The Sorghum bicolor genome and the diversification of grasses. Nature457(7229),551–556 (2009).
   PubMed Web of Science ®Google Scholar
• Stewart CNJ. Genetically Modified Planet: Environmental Impacts of Genetically Engineered Plants.Oxford University Press, NY, USA (2004).
   Google Scholar
• Wolfenbarger LL, Phifer APR. The ecological risks and benefits of genetically engineered plants. Science290(5499),2088–2093 (2000).
   PubMed Web of Science ®Google Scholar
• Stewart CNJ. Biofuels and biocontainment. Nat. Biotechnol.25(3),283–284 (2007).
   PubMed Web of Science ®Google Scholar
• Vogel KP, Jung H-JG. Genetic modification of herbaceous plants for feed and fuel. Crit. Rev. Plant Sci.20(1),15–49 (2001).
   Web of Science ®Google Scholar
• Mallory-Smith C, Zapiola ML. Gene flow from glyphosate-resistant crops. Pest Manag. Sci.64(4),428–440 (2008).
   PubMed Web of Science ®Google Scholar
• Zapiola ML, Mallory-Smith CA, Thompson JH, Rue LJ, Campbell CK, Butler MD. Gene escape from glyphosate-resistent creeping bentgrass fields: past, present and future. Proc. West. Soc. Weed Sci.60,82 (2007).
   Google Scholar
• Zapiola ML, Campbell CK, Butler MD, Mallory-Smith CA. Escape and establishment of transgenic glyphosate-resistant creeping bentgrass Agrostis stolonifera in Oregon, USA: a 4-year study. J. Appl. Ecol.45(2),486–494 (2008).
   Web of Science ®Google Scholar
• Reichman JR, Watrud LS, Lee EH et al. Establishment of transgenic herbicide-resistant creeping bentgrass (Agrostis stoloniferaL.) in nonagronomic habitats. Mol. Ecol.15(13),4243–4255 (2006).
   PubMed Web of Science ®Google Scholar
• Watrud LS, Lee EH, Fairbrother A et al. Evidence for landscape-level, pollen-mediated gene flow from genetically modified creeping bentgrass with CP4 EPSPS as a marker. Proc. Natl Acad. Sci. USA101(40),14533–14538 (2004).
   PubMed Web of Science ®Google Scholar
• Wipff JK, Fricker C. Gene flow from transgenic creeping bentgrass (Agrostis stolonifera L.) in the Willamette Valley, Oregon. Int. Turfgrass Soc. Res. J.7,9224–9242 (2001).
   Google Scholar
• Belanger FC, Meagher TR, Day PR, Plumley K, Meyer WA. Interspecific hybridization between Agrostis stolonifera and related Agrostis species under field conditions. Crop Sci.43(1),240–246 (2003).
   Web of Science ®Google Scholar
• Stewart CN, Halfhill MD, Warwick SI. Transgene introgression from genetically modified crops to their wild relatives. Nat. Rev. Genet.4(10),806–817 (2003).
   PubMed Web of Science ®Google Scholar
• Association of Official Seed Analysts. Rules for Testing Seeds. Stillwater, OK, USA (2002).
   Google Scholar
• Dunwell J, Ford CS. Desk study on technologies for biological containment of GM and non-GM crops. Department for Environment, Food and Rural Affairs (2005).
   Google Scholar
• Fei S, Nelson E. Estimation of pollen viability, shedding pattern, and longevity of creeping bentgrass on artificial media. Crop Sci.43(6),2177–2181 (2003).
   Google Scholar
• Stewart CJ. Pharming in crop commodities. Nat. Biotechnol.26(11),1222–1223 (2008).
   PubMedGoogle Scholar
• Mariani C, Beuckeleer MD, Truettner J, Leemans J, Goldberg RB. Induction of male sterility in plants by a chimaeric ribonuclease gene. Nature347(6295),737–741 (1990).
   Web of Science ®Google Scholar
• Luo H, Lyznik LA, Gidoni D, Hodges TK. FLP-mediated recombination for use in hybrid plant production. Plant J.23(3),423–430 (2000).
   PubMedGoogle Scholar
• De Block M, Debrouwer D, Moens T. The development of nuclear male sterility system in wheat: expression of the barnase gene under the control of tapetum specific promoters. Theor. Appl. Genet.95(1–2),125–131 (1997).
   Web of Science ®Google Scholar
• Hanson DD, Hamilton DA, Travis JL, Bashe DM, Mascarenhas JP. Characterization of a pollen-specific cDNA clone from Zea mays and its expression. Plant Cell1(2),173–179 (1989).
   PubMed Web of Science ®Google Scholar
• Zou JT, Zhan XY, Wu HM, Wang H, Cheung AY. Characterization of a rice pollen-specific gene and its expression. Am. J. Bot.81(5),552–561 (1994).
   Web of Science ®Google Scholar
• Twell D, Wing R, Yamaguchi J, McCormick S. Isolation and expression of an anther-specific gene from tomato. Mol. Gen. Genet.217(2–3),240–245 (1989).
   PubMedGoogle Scholar
• Theerakulpisut P, Xu H, Singh MB, Pettitt JM, Knox RB. Isolation and developmental expression of Bcp1, an anther-specific cDNA clone in Brassica campestris. Plant Cell3(10),1073–1084 (1991).
   PubMedGoogle Scholar
• Xu H, Knox RB, Taylor PE, Singh MB. Bcp1, a gene required for male fertility in Arabidopsis. Proc. Natl Acad. Sci. USA92(6),2106–2110 (1995).
   PubMedGoogle Scholar
• Goetz M, Godt DE, Guivarc’h A, Kahmann U, Chriqui D, Roitsch T. Induction of male sterility in plants by metabolic engineering of the carbohydrate supply. Proc. Natl Acad. Sci. USA98(11),6522–6527 (2001).
   PubMed Web of Science ®Google Scholar
• Jagannath A, Bandyopadhyay P, Arumugam N, Gupta V, Kumar P, Pental D. The use of spacer DNA fragment insulates the tissue-specific expression of a cytotoxic gene (barnase) and allows high-frequency generation of transgenic male sterile lines in Brassica juncea L. Mol. Breed.8(1),811–823 (2001).
   Google Scholar
• Moffatt B, Somerville C. Positive selection for male-sterile mutants of Arabidopsis lacking adenine phosphoribosyl transferase activity. Plant Physiol.86(4),1150–1154 (1988).
   PubMed Web of Science ®Google Scholar
• Tsuchiya T, Toriyama K, Yoshikawa M, Ejiri S, Hinata K. Tapetum-specific expression of the gene for an endo-β-1,3-glucanase causes male sterility in transgenic tobacco. Plant Cell Physiol.36(3),487–494 (1995).
   PubMed Web of Science ®Google Scholar
• Lee J-Y, Aldemita RR, Hodges TK. Isolation of a tapetum-specific gene and promoter from rice. Int. Rice Res. Newsl.212–213 (1996).
   Google Scholar
• Hartley RW. Barnase and Barstar: expression of its cloned inhibitor permits expression of a cloned ribonuclease. J. Mol. Biol.202(4),913–915 (1988).
   PubMed Web of Science ®Google Scholar
• Yui R, Iketani S, Mikami T, Kubo T. Antisense inhibition of mitochondrial pyruvate dehydrogenase E1α subunit in anther tapetum causes male sterility. Plant J.34(1),57–66 (2003).
   PubMed Web of Science ®Google Scholar
• He S, Abad AR, Gelvin SB, Mackenzie SA. A cytoplasmic male sterility-associated mitochondrial protein causes pollen disruption in transgenic tobacco. Proc. Natl Acad. Sci. USA93(21),11763–11768 (1996).
   PubMedGoogle Scholar
• Ruiz ON, Daniell H. Engineering cytoplasmic male sterility via the chloroplast genome by expression of β-ketothiolase. Plant Physiol.138(3),1232–1246 (2005).
   PubMed Web of Science ®Google Scholar
• Verma D, Daniell H. Chloroplast vector systems for biotechnology applications. Plant Physiol.145(4),1129–1143 (2007).
   PubMed Web of Science ®Google Scholar
• Daniell H. Molecular strategies for gene containment in transgenic crops. Nat. Biotechnol.20(6),581–586 (2002).
   PubMed Web of Science ®Google Scholar
• Daniell H. Transgene containment by maternal inheritance: effective or elusive? Proc. Natl Acad. Sci. USA104(17),6879–6880 (2007).
   PubMed Web of Science ®Google Scholar
• Ruf S, Karcher D, Bock R. Determining the transgene containment level provided by chloroplast transformation. Proc. Natl Acad. Sci. USA104(17),6998–7002 (2007).
   PubMed Web of Science ®Google Scholar
• Arlen PA, Falconer R, Cherukumilli S et al. Field production and functional evaluation of chloroplast-derived interferon-α2b. Plant Biotechnol. J.5(4),511–525 (2007).
   PubMedGoogle Scholar
• Azhagiri AK, Maliga P. Exceptional paternal inheritance of plastids in Arabidopsis suggests that low-frequency leakage of plastids via pollen may be universal in plants. Plant J.52(5),817–823 (2007).
   PubMed Web of Science ®Google Scholar
• Svab Z, Maliga P. Exceptional transmission of plastids and mitochondria from the transplastomic pollen parent and its impact on transgene containment. Proc. Natl Acad. Sci. USA104(17),7003–7008 (2007).
   PubMed Web of Science ®Google Scholar
• Davoodi-Semiromi ASN, Daniell H. The green vaccine: a global strategy to combat infectious and autoimmune diseases. Hum. Vacc.5(7),488–493 (2009).
   PubMed Web of Science ®Google Scholar
• Verma D, Samson NP, Koya V, Daniell H. A protocol for expression of foreign genes in chloroplasts. Nat. Protocol.3(4),739–758 (2008).
   PubMed Web of Science ®Google Scholar
• Lee SM, Chung H, Yoo SH et al. Plastid transformation in the monocotyledonous cereal crop, rice (Oryza sativa) and transmission of transgenes to their progeny. Mol. Cells21(3),401–410 (2006).
   PubMed Web of Science ®Google Scholar
• Verma D, Jin S, Singh ND, Kolattukudy PE, Daniell H. Chloroplast-derived enzyme cocktails hydrolyse lignocellulosic biomass and release fermentable sugars. Plant Biotechnol. J. (2009) (In press).
   PubMedGoogle Scholar
• Luo K, Duan H, Zhao D et al. “GM-gene-deletor”: fused loxP-FRT recognition sequences dramatically improve the efficiency of FLP or CRE recombinase on transgene excision from pollen and seed of tobacco plants. Plant Biotechnol. J.5(2),263–374 (2007).
   PubMed Web of Science ®Google Scholar
• Bradford KJ, Van Deynze A, Gutterson N, Parrott W, Strauss SH. Regulating transgenic crops sensibly: lessons from plant breeding, biotechnology and genomics. Nat. Biotechnol.23(4),439–444 (2005).
   PubMed Web of Science ®Google Scholar
• Chen F, Dixon RA. Lignin modification improves fermentable sugar yields for biofuel production. Nat. Biotechnol.25(7),759–761 (2007).
   PubMed Web of Science ®Google Scholar
• Campbell JE, Lobell DB, Field CB. Greater transportation energy and GHG offsets from bioelectricity than ethanol. Science324(5930),1055–1057 (2009).
   PubMed Web of Science ®Google Scholar

▪ Patents

• Oliver MJ, Quiseberry JE, Trolinder N, Keim DL. US 5723765 (1998).
   Google Scholar
• Oliver MJ, Quisenberry JE, Trolinder N, Keim DL. US 5925808 (1999).
   Google Scholar
• Oliver MJ, Quisenberry JE, Trolinder N, Keim DL. US 5977441 (1999).
   Google Scholar
• Tomes DT, Huang B, Miller PD. US 5773697 (1998).
   Google Scholar

▪ Website

• United States Department of Agriculture Plants Database http://plants.usda.gov
   Google Scholar