References
- Rupp GM , LockerJ. Purification and analysis of RNA from paraffin embedded tissues. Biotechniques6, 56–60 (1988).
- Stanta G , BoninS. RNA quantitative analysis from fixed and paraffin embedded tissues: membrane hybridization and capillary electrophoresis. Biotechniques24, 271–276 (1998).
- Specht K , RichterT, MullerU, WalchA, WernerM, HoflerH. Quantitative gene expression analysis in microdissected archival formalin fixed and paraffin-embedded tumor tissue. Am. J. Pathol. 158, 419–429 (2001).
- Abrahamsen HN , SteinicheT, NexoE, Hamilton-DutoitSJ, SorensenBS. Towards quantitative mRNA analysis in paraffin-embedded tissues using real-time reverse transcriptase-polymerase chain reaction: a methodological study on lymph nodes from melanoma patients. J. Mol. Diagn. 5, 34–41 (2003).
- Farragher SM , TanneyA, KennedyRD, Paul HarkinD. RNA expression analysis from formalin fixed paraffin embedded tissues. Histochem. Cell Biol. 130 (3), 435–445 (2008).
- Cronin M , PhoM, DuttaDet al. Measurement of gene expression in archival paraffin-embedded tissues: development and performance of a 92-gene reverse transcriptase-polymerase chain reaction assay. Am. J. Pathol. 164 (1), 35–42 (2004).
- Geiss GK , BumgarnerRE, BirdittBet al. Direct multiplexed measurement of gene expression with color-coded probe pairs. Nat. Biotechnol. 26 (3), 317–325 (2008).
- Martel RR , BotrosIW, RounsevilleMPet al. Multiplexed screening assay for mRNA combining nuclease protection with luminescent array detection. Assay Drug Dev. Technol. 1 (1 Pt1), 61–71 (2002).
- Wang J , ShenL, NajafiHet al. Regulation of insulin preRNA splicing by glucose. Proc. Natl Acad. Sci. USA94 (9), 4360–4365 (1997).
- Suman S , DasTP, AnkemMK, DamodaranC. Targeting Notch signaling in colorectal cancer. Curr. Colorectal Cancer Rep. 10 (4), 411–416 (2014).
- Jin HY , ZhangHY, WangX, XuJ, DingY. Expression and clinical significance of Notch signaling genes in colorectal cancer. Tumour Biol. 33 (3), 817–824 (2012).
- Applied-Biosystems . TaqMan gene expression assays protocol, PN 4333458N (2010). www3.appliedbiosystems.com/cms/groups/mcb_support/documents/generaldocuments/cms_041280.pdf.
- HTG . HTG Edge System User Manual_10017900 Rev B (2013).
- NanoString . nCounter Gene Expression Assay User Manual for Total RNA and Cell Lysate Protocols. Version MAN-C0003–03 (2013). www.nanostring.com/media/pdf/MAN_nCounter_Gene_Expression_Assay.pdf.
- Wong ML , MedranoJF. Real-time PCR for mRNA quantitation. Biotechniques39 (1), 75–85 (2005).
- Martel RR , RounsevilleMP, BotrosIW, SeligmannBE. Multiplexed chemiluminescent assays in ArrayPlates for high-throughput measurement of gene expression. Proc. SPIE4626, 35–43 (2002).
- Bourzac KM , RounsevilleMP, ZarateXet al. A high-density quantitative nuclease protection microarray platform for high throughput analysis of gene expression. J. Biotechnol. 154 (1), 68–75 (2011).
- Malkov VA , SerikawaKA, BalantacNet al. Multiplexed measurements of gene signatures in different analytes using the Nanostring nCounter™ Assay System. BMC Res. Notes2, 80 (2009).
- Sportmann P , KnappK, SchwartzMet al. Repeatability and reproducibility of an automated, multiplex p450 enzyme gene expression assay. Poster presented at : 20th Meeting of North American International Society for the Study of Xenobiotics. Orlando, FL, USA, 18–22 October 2015.
- Mardis ER . The impact of next-generation sequencing technology on genetics. Trends Genet. 24 (3), 133–141 (2008).
- Voelkerding KV , DamesSA, DurtschiJD. Next-generation sequencing: from basic research to diagnostics. Clin. Chem. 55 (4), 641–658 (2009).
- Reinholz M , ThompsonD, CooleyJ, ChenX-B, HowlettI, LueckeJ. HTG EdgeSeq oncology biomarker panel (OBP), an NGS-based measurement of gene expression of 2,560 oncology-related biomarkers in formalin-fixed, paraffin-embedded (FFPE) tissues. Poster presented at : AACR Annual Meeting 2016. New Orleans, LA, USA, 17–19 April 2016 ( Abstract 1383).
- Reinholz M , ThompsonD, BotrosI, RounsevilleM, RocheP. Gene expression measurement of immuno-oncology targets in a single FFPE section using a novel targeted sequencing assay. Poster presented at : AACR Annual Meeting 2016. New Orleans, LA, USA, 17–19 April 2016 ( Abstract 2237).