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Review

A commentary on the role of molecular technology and automation in clinical diagnostics

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Pages 155-160 | Received 06 Feb 2014, Accepted 19 Mar 2014, Published online: 21 Mar 2014

References

  • Armstrong GL, Conn LA, Pinner RW. Trends in infectious disease mortality in the United States during the 20th century. JAMA 1999; 281:61 - 6; http://dx.doi.org/10.1001/jama.281.1.61; PMID: 9892452
  • Daniels R. Surviving the first hours in sepsis: getting the basics right (an intensivist’s perspective). J Antimicrob Chemother 2011; 66:Suppl 2 ii11 - 23; http://dx.doi.org/10.1093/jac/dkq515; PMID: 21398303
  • Phua J, Ho BC, Tee A, Chan KP, Johan A, Loo S, So CR, Chia N, Tan AY, Tham HM, et al. The impact of clinical protocols in the management of severe sepsis: a prospective cohort study. Anaesth Intensive Care 2012; 40:663 - 74; PMID: 22813495
  • Yang S, Rothman RE. PCR-based diagnostics for infectious diseases: uses, limitations, and future applications in acute-care settings. Lancet Infect Dis 2004; 4:337 - 48; http://dx.doi.org/10.1016/S1473-3099(04)01044-8; PMID: 15172342
  • Bourbeau PP, Ledeboer NA. Automation in clinical microbiology. J Clin Microbiol 2013; 51:1658 - 65; http://dx.doi.org/10.1128/JCM.00301-13; PMID: 23515547
  • Dokouhaki P, Blondeau JM. Advances in laboratory diagnostic technologies in clinical microbiology and what this means for clinical practice. Clin Pract 2012; 9:347 - 52; http://dx.doi.org/10.2217/cpr.12.32
  • Duszyńska W. Strategies of empiric antibiotic therapy in severe sepsis. Anaesthesiol Intensive Ther 2012; 44:96 - 103; PMID: 22992970
  • Carleton A, Casserly B, Power L, Linnane B, O’flaherty G, Powell J, Hartnett P, Collins J, Murphy P, Kenna D, et al. Clustered multidrug‐resistant Bordetella petrii in adult cystic fibrosis patients in Ireland: case report and review of antimicrobial therapies. JMM Case Reports 2014; 1:1 - 6
  • Carbonnelle E, Mesquita C, Bille E, Day N, Dauphin B, Beretti JL, Ferroni A, Gutmann L, Nassif X. MALDI-TOF mass spectrometry tools for bacterial identification in clinical microbiology laboratory. Clin Biochem 2011; 44:104 - 9; http://dx.doi.org/10.1016/j.clinbiochem.2010.06.017; PMID: 20620134
  • Seng P, Rolain JM, Fournier PE, La Scola B, Drancourt M, Raoult D. MALDI-TOF-mass spectrometry applications in clinical microbiology. Future Microbiol 2010; 5:1733 - 54; http://dx.doi.org/10.2217/fmb.10.127; PMID: 21133692
  • Neville SA, Lecordier A, Ziochos H, Chater MJ, Gosbell IB, Maley MW, van Hal SJ. Utility of matrix-assisted laser desorption ionization-time of flight mass spectrometry following introduction for routine laboratory bacterial identification. J Clin Microbiol 2011; 49:2980 - 4; http://dx.doi.org/10.1128/JCM.00431-11; PMID: 21632894
  • Bullman S, Lucey B, Sleator RD. Molecular diagnostics: the changing culture of medical microbiology. Bioeng Bugs 2012; 3:1 - 7; http://dx.doi.org/10.4161/bbug.3.1.19011; PMID: 22179143
  • Bizzini A, Durussel C, Bille J, Greub G, Prod’hom G. Performance of matrix-assisted laser desorption ionization-time of flight mass spectrometry for identification of bacterial strains routinely isolated in a clinical microbiology laboratory. J Clin Microbiol 2010; 48:1549 - 54; http://dx.doi.org/10.1128/JCM.01794-09; PMID: 20220166
  • Loonen AJ, Jansz AR, Bergland JN, Valkenburg M, Wolffs PF, van den Brule AJ. Comparative study using phenotypic, genotypic, and proteomics methods for identification of coagulase-negative staphylococci. J Clin Microbiol 2012; 50:1437 - 9; http://dx.doi.org/10.1128/JCM.06746-11; PMID: 22238435
  • Santos C, Paterson RR, Venâncio A, Lima N. Filamentous fungal characterizations by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. J Appl Microbiol 2010; 108:375 - 85; http://dx.doi.org/10.1111/j.1365-2672.2009.04448.x; PMID: 19659699
  • Cobo F. Application of maldi-tof mass spectrometry in clinical virology: a review. Open Virol J 2013; 7:84 - 90; http://dx.doi.org/10.2174/1874357920130927003; PMID: 24222805
  • La Scola B, Fournier PE, Raoult D. Burden of emerging anaerobes in the MALDI-TOF and 16S rRNA gene sequencing era. Anaerobe 2011; 17:106 - 12; http://dx.doi.org/10.1016/j.anaerobe.2011.05.010; PMID: 21672636
  • Barreau M, Pagnier I, La Scola B. Improving the identification of anaerobes in the clinical microbiology laboratory through MALDI-TOF mass spectrometry. Anaerobe 2013; 22:123 - 5; http://dx.doi.org/10.1016/j.anaerobe.2013.04.011; PMID: 23639482
  • Carbonnelle E, Grohs P, Jacquier H, Day N, Tenza S, Dewailly A, Vissouarn O, Rottman M, Herrmann JL, Podglajen I, et al. Robustness of two MALDI-TOF mass spectrometry systems for bacterial identification. J Microbiol Methods 2012; 89:133 - 6; http://dx.doi.org/10.1016/j.mimet.2012.03.003; PMID: 22425492
  • Werno AM, Christner M, Anderson TP, Murdoch DR. Differentiation of Streptococcus pneumoniae from nonpneumococcal streptococci of the Streptococcus mitis group by matrix-assisted laser desorption ionization-time of flight mass spectrometry. J Clin Microbiol 2012; 50:2863 - 7; http://dx.doi.org/10.1128/JCM.00508-12; PMID: 22718935
  • Tan KE, Ellis BC, Lee R, Stamper PD, Zhang SX, Carroll KC. Prospective evaluation of a matrix-assisted laser desorption ionization-time of flight mass spectrometry system in a hospital clinical microbiology laboratory for identification of bacteria and yeasts: a bench-by-bench study for assessing the impact on time to identification and cost-effectiveness. J Clin Microbiol 2012; 50:3301 - 8; http://dx.doi.org/10.1128/JCM.01405-12; PMID: 22855510
  • Loonen AJ, Jansz AR, Stalpers J, Wolffs PF, van den Brule AJ. An evaluation of three processing methods and the effect of reduced culture times for faster direct identification of pathogens from BacT/ALERT blood cultures by MALDI-TOF MS. Eur J Clin Microbiol Infect Dis 2012; 31:1575 - 83; http://dx.doi.org/10.1007/s10096-011-1480-y; PMID: 22080416
  • Baillie S, Ireland K, Warwick S, Wareham D, Wilks M. Matrix-assisted laser desorption/ionisation-time of flight mass spectrometry: rapid identification of bacteria isolated from patients with cystic fibrosis. Br J Biomed Sci 2013; 70:144 - 8; PMID: 24400425
  • Lagacé-Wiens PR, Adam HJ, Karlowsky JA, Nichol KA, Pang PF, Guenther J, Webb AA, Miller C, Alfa MJ. Identification of blood culture isolates directly from positive blood cultures by use of matrix-assisted laser desorption ionization-time of flight mass spectrometry and a commercial extraction system: analysis of performance, cost, and turnaround time. J Clin Microbiol 2012; 50:3324 - 8; http://dx.doi.org/10.1128/JCM.01479-12; PMID: 22875888
  • Schieffer KM, Tan KE, Stamper PD, Somogyi A, Andrea SB, Wakefield T, Romagnoli M, Chapin KC, Wolk DM, Carroll KC. Multicenter evaluation of the Sepsityper™ extraction kit and MALDI-TOF MS for direct identification of positive blood culture isolates using the BD BACTEC™ FX and VersaTREK(®) diagnostic blood culture systems. J Appl Microbiol 2014; 116:934 - 41; http://dx.doi.org/10.1111/jam.12434; PMID: 24410849
  • Tenover FC. Potential impact of rapid diagnostic tests on improving antimicrobial use. Ann N Y Acad Sci 2010; 1213:70 - 80; http://dx.doi.org/10.1111/j.1749-6632.2010.05827.x; PMID: 21054433
  • Gaillot O, Blondiaux N, Loïez C, Wallet F, Lemaître N, Herwegh S, Courcol RJ. Cost-effectiveness of switch to matrix-assisted laser desorption ionization-time of flight mass spectrometry for routine bacterial identification. J Clin Microbiol 2011; 49:4412; http://dx.doi.org/10.1128/JCM.05429-11; PMID: 21998417
  • Steed LL, Ball RT Jr.. Respiratory virus detection: beyond influenza and RSV into emerging infectious diseases. J S C Med Assoc 2013; 109:85 - 7; PMID: 24261155
  • López Roa P, Alonso R, de Egea V, Usubillaga R, Muñoz P, Bouza E. PCR for detection of herpes simplex virus in cerebrospinal fluid: alternative acceptance criteria for diagnostic workup. J Clin Microbiol 2013; 51:2880 - 3; http://dx.doi.org/10.1128/JCM.00950-13; PMID: 23804382
  • Jensen KH, Dargis R, Christensen JJ, Kemp M. Ribosomal PCR and DNA sequencing for detection and identification of bacteria: experience from 6 years of routine analyses of patient samples. APMIS 2014; 122:248 - 55; http://dx.doi.org/10.1111/apm.12139; PMID: 23879657
  • Duffett S, Missaghi B, Daley P. Culture-negative endocarditis diagnosed using 16S DNA polymerase chain reaction. Can J Infect Dis Med Microbiol 2012; 23:216 - 8; PMID: 24294278
  • Kostrzewa M, Sparbier K, Maier T, Schubert S. MALDI-TOF MS: an upcoming tool for rapid detection of antibiotic resistance in microorganisms. Proteomics Clin Appl 2013; 7:767 - 78; http://dx.doi.org/10.1002/prca.201300042; PMID: 24123965
  • Gabriel EM, Douarre PE, Fitzgibbon S, Clair J, Lucey B, Coffey A, O’Mahony JM. High-resolution melting analysis for rapid detection of linezolid resistance (mediated by G2576T mutation) in Staphylococcus epidermidis. J Microbiol Methods 2012; 90:134 - 6; http://dx.doi.org/10.1016/j.mimet.2012.04.002; PMID: 22561095

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