Assembly of evolved ligninolytic genes in Saccharomyces cerevisiae

References

• Garcia-Ruiz E, Mate DM, Gonzalez-Perez D, Molina-Espeja P, Camarero S, Martinez AT, Ballesteros AO, Alcalde M. Directed evoluton of ligninolytic oxidoreductases: from functional expression to stabilization and beyond. In: Cascade Biocatalysis, Riva, Fessner eds. Wiley-VCH 2014; In press.
   Google Scholar
• Martínez AT, Ruiz-Dueñas FJ, Martínez MJ, Del Río JC, Gutiérrez A. Enzymatic delignification of plant cell wall: from nature to mill. Curr Opin Biotechnol 2009; 20:348 - 57; http://dx.doi.org/10.1016/j.copbio.2009.05.002; PMID: 19502047
   PubMed Web of Science ®Google Scholar
• Bulter T, Alcalde M, Sieber V, Meinhold P, Schlachtbauer C, Arnold FH. Functional expression of a fungal laccase in Saccharomyces cerevisiae by directed evolution. Appl Environ Microbiol 2003; 69:987 - 95; http://dx.doi.org/10.1128/AEM.69.2.987-995.2003; PMID: 12571021
   PubMed Web of Science ®Google Scholar
• Zumárraga M, Camarero S, Shleev S, Martínez-Arias A, Ballesteros A, Plou FJ, Alcalde M. Altering the laccase functionality by in vivo assembly of mutant libraries with different mutational spectra. Proteins 2008; 71:250 - 60; http://dx.doi.org/10.1002/prot.21699; PMID: 17932916
   PubMed Web of Science ®Google Scholar
• Zumárraga M, Bulter T, Shleev S, Polaina J, Martínez-Arias A, Plou FJ, Ballesteros A, Alcalde M. In vitro evolution of a fungal laccase in high concentrations of organic cosolvents. Chem Biol 2007; 14:1052 - 64; http://dx.doi.org/10.1016/j.chembiol.2007.08.010; PMID: 17884637
   PubMed Web of Science ®Google Scholar
• Torres-Salas P, Mate DM, Ghazi I, Plou FJ, Ballesteros AO, Alcalde M. Widening the pH activity profile of a fungal laccase by directed evolution. Chembiochem 2013; 14:934 - 7; http://dx.doi.org/10.1002/cbic.201300102; PMID: 23592228
   PubMed Web of Science ®Google Scholar
• Maté D, García-Burgos C, García-Ruiz E, Ballesteros AO, Camarero S, Alcalde M. Laboratory evolution of high-redox potential laccases. Chem Biol 2010; 17:1030 - 41; http://dx.doi.org/10.1016/j.chembiol.2010.07.010; PMID: 20851352
   PubMed Web of Science ®Google Scholar
• Maté D, García-Ruiz E, Camarero S, Alcalde M. Directed evolution of fungal laccases. Curr Genomics 2011; 12:113 - 22; http://dx.doi.org/10.2174/138920211795564322; PMID: 21966249
   PubMed Web of Science ®Google Scholar
• Camarero S, Pardo I, Cañas AI, Molina P, Record E, Martínez AT, Martínez MJ, Alcalde M. Engineering platforms for directed evolution of Laccase from Pycnoporus cinnabarinus.. Appl Environ Microbiol 2012; 78:1370 - 84; http://dx.doi.org/10.1128/AEM.07530-11; PMID: 22210206
   PubMed Web of Science ®Google Scholar
• Mate DM, Gonzalez-Perez D, Falk M, Kittl R, Pita M, De Lacey AL, Ludwig R, Shleev S, Alcalde M. Blood tolerant laccase by directed evolution. Chem Biol 2013; 20:223 - 31; http://dx.doi.org/10.1016/j.chembiol.2013.01.001; PMID: 23438751
   PubMed Web of Science ®Google Scholar
• Pardo I, Vicente AI, Mate DM, Alcalde M, Camarero S. Development of chimeric laccases by directed evolution. Biotechnol Bioeng 2012; 109:2978 - 86; http://dx.doi.org/10.1002/bit.24588; PMID: 22729887
   PubMed Web of Science ®Google Scholar
• García-Ruiz E, Maté D, Ballesteros A, Martínez AT, Alcalde M. Evolving thermostability in mutant libraries of ligninolytic oxidoreductases expressed in yeast. Microb Cell Fact 2010; 9:17; http://dx.doi.org/10.1186/1475-2859-9-17; PMID: 20298573
   PubMed Web of Science ®Google Scholar
• Garcia-Ruiz E, Gonzalez-Perez D, Ruiz-Dueñas FJ, Martínez AT, Alcalde M. Directed evolution of a temperature-, peroxide- and alkaline pH-tolerant versatile peroxidase. Biochem J 2012; 441:487 - 98; http://dx.doi.org/10.1042/BJ20111199; PMID: 21980920
   PubMed Web of Science ®Google Scholar
• Gonzalez-Perez D, Molina-Espeja P, Garcia-Ruiz E, Alcalde M. Mutagenic Organized Recombination Process by Homologous IN vivo Grouping (MORPHING) for directed enzyme evolution. PLoS One 2014; 9:e90919; http://dx.doi.org/10.1371/journal.pone.0090919; PMID: 24614282
   PubMed Web of Science ®Google Scholar
• Molina-Espeja P, Garcia-Ruiz E, Gonzalez-Perez D, Ullrich R, Hofrichter M, Alcalde M. Directed evolution of unspecific peroxygenase from Agrocybe aegerita.. Appl Environ Microbiol 2014; 80:3496 - 507; http://dx.doi.org/10.1128/AEM.00490-14; PMID: 24682297
   PubMed Web of Science ®Google Scholar
• Gonzalez-Perez D, Garcia-Ruiz E, Alcalde M. Saccharomyces cerevisiae in directed evolution: An efficient tool to improve enzymes. Bioeng Bugs 2012; 3:172 - 7; http://dx.doi.org/10.4161/bbug.19544; PMID: 22572788
   PubMedGoogle Scholar
• Alcalde M. Mutagenesis protocols in Saccharomyces cerevisiae by in vivo overlap extension. Methods Mol Biol 2010; 634:3 - 14; http://dx.doi.org/10.1007/978-1-60761-652-8_1; PMID: 20676972
   PubMedGoogle Scholar
• Krivoruchko A, Siewers V, Nielsen J. Opportunities for yeast metabolic engineering: Lessons from synthetic biology. Biotechnol J 2011; 6:262 - 76; http://dx.doi.org/10.1002/biot.201000308; PMID: 21328545
   PubMed Web of Science ®Google Scholar
• Nevoigt E. Progress in metabolic engineering of Saccharomyces cerevisiae.. Microbiol Mol Biol Rev 2008; 72:379 - 412; http://dx.doi.org/10.1128/MMBR.00025-07; PMID: 18772282
   PubMed Web of Science ®Google Scholar
• Da Silva NA, Srikrishnan S. Introduction and expression of genes for metabolic engineering applications in Saccharomyces cerevisiae.. FEMS Yeast Res 2012; 12:197 - 214; http://dx.doi.org/10.1111/j.1567-1364.2011.00769.x; PMID: 22129153
   PubMed Web of Science ®Google Scholar
• Ostrov N, Wingler LM, Cornish VW. Gene assembly and combinatorial libraries in S. cerevisiae via reiterative recombination. Methods Mol Biol 2013; 978:187 - 203; http://dx.doi.org/10.1007/978-1-62703-293-3_14; PMID: 23423898
   PubMedGoogle Scholar
• Shao Z, Zhao H, Zhao H. DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways. Nucleic Acids Res 2009; 37:e16; http://dx.doi.org/10.1093/nar/gkn991; PMID: 19074487
   PubMed Web of Science ®Google Scholar
• Wingler LM, Cornish VW. Reiterative Recombination for the in vivo assembly of libraries of multigene pathways. Proc Natl Acad Sci U S A 2011; 108:15135 - 40; http://dx.doi.org/10.1073/pnas.1100507108; PMID: 21876185
   PubMed Web of Science ®Google Scholar
• Wang T, Ma X, Zhu H, Li A, Du G, Chen J. Available methods for assembling expression cassettes for synthetic biology. Appl Microbiol Biotechnol 2012; 93:1853 - 63; http://dx.doi.org/10.1007/s00253-012-3920-8; PMID: 22311648
   PubMed Web of Science ®Google Scholar
• Ragauskas AJ, Williams CK, Davison BH, Britovsek G, Cairney J, Eckert CA, Frederick WJ Jr., Hallett JP, Leak DJ, Liotta CL, et al. The path forward for biofuels and biomaterials. Science 2006; 311:484 - 9; http://dx.doi.org/10.1126/science.1114736; PMID: 16439654
   PubMed Web of Science ®Google Scholar
• Hong KK, Nielsen J. Metabolic engineering of Saccharomyces cerevisiae: a key cell factory platform for future biorefineries. Cell Mol Life Sci 2012; 69:2671 - 90; http://dx.doi.org/10.1007/s00018-012-0945-1; PMID: 22388689
   PubMed Web of Science ®Google Scholar
• Huang GL, Anderson TD, Clubb RT. Engineering microbial surfaces to degrade lignocellulosic biomass. Bioengineered 2013; 5:1 - 11; PMID: 24430239
   PubMedGoogle Scholar
• Oreb M, Dietz H, Farwick A, Boles E. Novel strategies to improve co-fermentation of pentoses with D-glucose by recombinant yeast strains in lignocellulosic hydrolysates. Bioengineered 2012; 3:347 - 51; http://dx.doi.org/10.4161/bioe.21444; PMID: 22892590
   PubMed Web of Science ®Google Scholar
• Sun J, Wen F, Si T, Xu JH, Zhao H. Direct conversion of xylan to ethanol by recombinant Saccharomyces cerevisiae strains displaying an engineered minihemicellulosome. Appl Environ Microbiol 2012; 78:3837 - 45; http://dx.doi.org/10.1128/AEM.07679-11; PMID: 22447594
   PubMed Web of Science ®Google Scholar
• Nair NU, Zhao H. Evolution in reverse: engineering a D-xylose-specific xylose reductase. Chembiochem 2008; 9:1213 - 5; http://dx.doi.org/10.1002/cbic.200700765; PMID: 18383056
   PubMed Web of Science ®Google Scholar
• Andrews BJ, Proteau GA, Beatty LG, Sadowski PD. The FLP recombinase of the 2 micron circle DNA of yeast: interaction with its target sequences. Cell 1985; 40:795 - 803; http://dx.doi.org/10.1016/0092-8674(85)90339-3; PMID: 3879971
   PubMed Web of Science ®Google Scholar
• Cartwright CP, Zhu YS, Tipper DJ. Efficient secretion in yeast based on fragments from K1 killer preprotoxin. Yeast 1992; 8:261 - 72; http://dx.doi.org/10.1002/yea.320080404; PMID: 1514325
   PubMed Web of Science ®Google Scholar