F-BAR domain proteins

References

• Frost A, Unger VM, de CP. The BAR domain superfamily: membrane-molding macromolecules. Cell 2009; 137:191 - 196
   PubMed Web of Science ®Google Scholar
• Peter BJ, Kent HM, Mills IG, Vallis Y, Butler PJ, Evans PR, et al. BAR domains as sensors of membrane curvature: the amphiphysin BAR structure. Science 2004; 303:495 - 499
   PubMed Web of Science ®Google Scholar
• Lee SH, Kerff F, Chereau D, Ferron F, Klug A, Dominguez R. Structural basis for the actin-binding function of missing-in-metastasis. Structure 2007; 15:145 - 155
   PubMed Web of Science ®Google Scholar
• Mattila PK, Pykalainen A, Saarikangas J, Paavilainen VO, Vihinen H, Jokitalo E, et al. Missing-inmetastasis and IRSp53 deform PI(4,5)P2-rich membranes by an inverse BAR domain-like mechanism. JCell Biol 2007; 176:953 - 964
   PubMed Web of Science ®Google Scholar
• Millard TH, Bompard G, Heung MY, Dafforn TR, Scott DJ, Machesky LM, et al. Structural basis of filopodia formation induced by the IRSp53/MIM homology domain of human IRSp53. EMBO J 2005; 24:240 - 250
   PubMed Web of Science ®Google Scholar
• Suetsugu S, Murayama K, Sakamoto A, Hanawa-Suetsugu K, Seto A, Oikawa T, et al. The RAC binding domain/IRSp53-MIM homology domain of IRSp53 induces RAC-dependent membrane deformation. J Biol Chem 2006; 281:35347 - 35358
   PubMed Web of Science ®Google Scholar
• Yamagishi A, Masuda M, Ohki T, Onishi H, Mochizuki N. A novel actin bundling/filopodium-forming domain conserved in insulin receptor tyrosine kinase substrate p53 and missing in metastasis protein. J Biol Chem 2004; 279:14929 - 14936
   PubMed Web of Science ®Google Scholar
• Saarikangas J, Zhao H, Pykalainen A, Laurinmaki P, Mattila PK, Kinnunen PK, et al. Molecular mechanisms of membrane deformation by I-BAR domain proteins. Curr Biol 2009; 19:95 - 107
   PubMed Web of Science ®Google Scholar
• Lim KB, Bu W, Goh WI, Koh E, Ong SH, Pawson T, et al. The Cdc42 effector IRSp53 generates filopodia by coupling membrane protrusion with actin dynamics. J Biol Chem 2008; 283:20454 - 20472
   PubMed Web of Science ®Google Scholar
• Lippincott J, Li R. Involvement of PCH family proteins in cytokinesis and actin distribution. MicroscRes Tech 2000; 49:168 - 172
   PubMed Web of Science ®Google Scholar
• Greer P. Closing in on the biological functions of Fps/Fes and Fer. Nat Rev Mol Cell Biol 2002; 3:278 - 289
   PubMed Web of Science ®Google Scholar
• Itoh T, Erdmann KS, Roux A, Habermann B, Werner H, De Camilli P. Dynamin and the actin cytoskeleton cooperatively regulate plasma membrane invagination by BAR and F-BAR proteins. Dev Cell 2005; 9:791 - 804
   PubMed Web of Science ®Google Scholar
• Tsujita K, Suetsugu S, Sasaki N, Furutani M, Oikawa T, Takenawa T. Coordination between the actin cytoskeleton and membrane deformation by a novel membrane tubulation domain of PCH proteins is involved in endocytosis. J Cell Biol 2006; 172:269 - 279
   PubMed Web of Science ®Google Scholar
• Kovar DR. Molecular details of formin-mediated actin assembly. Curr Opin Cell Biol 2006; 18:11 - 17
   PubMed Web of Science ®Google Scholar
• Shimada A, Niwa H, Tsujita K, Suetsugu S, Nitta K, Hanawa-Suetsugu K, et al. Curved EFC/F-BARdomain dimers are joined end to end into a filament for membrane invagination in endocytosis. Cell 2007; 129:761 - 772
   PubMed Web of Science ®Google Scholar
• Frost A, Perera R, Roux A, Spasov K, Destaing O, Egelman EH, et al. Structural basis of membrane invagination by F-BAR domains. Cell 2008; 132:807 - 817
   PubMed Web of Science ®Google Scholar
• Soderling SH, Binns KL, Wayman GA, Davee SM, Ong SH, Pawson T, et al. The WRP component of the WAVE-1 complex attenuates Rac-mediated signalling. Nat Cell Biol 2002; 4:970 - 975
   PubMed Web of Science ®Google Scholar
• Soderling SH, Guire ES, Kaech S, White J, Zhang F, Schutz K, et al. A WAVE-1 and WRP signaling complex regulates spine density, synaptic plasticity and memory. J Neurosci 2007; 27:355 - 365
   PubMed Web of Science ®Google Scholar
• Guerrier S, Coutinho-Budd J, Sassa T, Gresset A, Jordan NV, Chen K, et al. The F-BAR domain of srGAP2 induces membrane protrusions required for neuronal migration and morphogenesis. Cell 2009; 138:990 - 1004
   PubMed Web of Science ®Google Scholar
• Kogata N, Masuda M, Kamioka Y, Yamagishi A, Endo A, Okada M, et al. Identification of Fer tyrosine kinase localized on microtubules as a platelet endothelial cell adhesion molecule-1 phosphorylating kinase in vascular endothelial cells. Mol Biol Cell 2003; 14:3553 - 3564
   PubMed Web of Science ®Google Scholar
• Fan L, Di Ciano-Oliveira C, Weed SA, Craig AW, Greer PA, Rotstein OD, et al. Actin depolymerization-induced tyrosine phosphorylation of cortactin: the role of Fer kinase. Biochem J 2004; 380:581 - 591
   PubMed Web of Science ®Google Scholar
• Itoh T, Hasegawa J, Tsujita K, Kanaho Y, Takenawa T. The tyrosine kinase Fer is a downstream target of the PLD-PA pathway that regulates cell migration. Sci Signal 2009; 2:52
   Web of Science ®Google Scholar
• Shapovalova Z, Tabunshchyk K, Greer PA. The Fer tyrosine kinase regulates an axon retraction response to Semaphorin 3A in dorsal root ganglion neurons. BMC Dev Biol 2007; 7:133
   PubMed Web of Science ®Google Scholar
• Murray MJ, Davidson CM, Hayward NM, Brand AH. The Fes/Fer non-receptor tyrosine kinase cooperates with Src42A to regulate dorsal closure in Drosophila. Development 2006; 133:3063 - 3073
   PubMed Web of Science ®Google Scholar
• Kessels MM, Qualmann B. The syndapin protein family: linking membrane trafficking with the cytoskeleton. J Cell Sci 2004; 117:3077 - 3086
   PubMed Web of Science ®Google Scholar
• Modregger J, Ritter B, Witter B, Paulsson M, Plomann M. All three PACSIN isoforms bind to endocytic proteins and inhibit endocytosis. J Cell Sci 2000; 113:4511 - 4521
   PubMed Web of Science ®Google Scholar
• Anggono V, Smillie KJ, Graham ME, Valova VA, Cousin MA, Robinson PJ. Syndapin I is the phosphorylation-regulated dynamin I partner in synaptic vesicle endocytosis. Nat Neurosci 2006; 9:752 - 760
   PubMed Web of Science ®Google Scholar
• Kessels MM, Qualmann B. Syndapin oligomers interconnect the machineries for endocytic vesicle formation and actin polymerization. J Biol Chem 2006; 281:13285 - 13299
   PubMed Web of Science ®Google Scholar
• Kessels MM, Dong J, Leibig W, Westermann P, Qualmann B. Complexes of syndapin II with dynamin II promote vesicle formation at the trans-Golgi network. J Cell Sci 2006; 119:1504 - 1516
   PubMed Web of Science ®Google Scholar
• Braun A, Pinyol R, Dahlhaus R, Koch D, Fonarev P, Grant BD, et al. EHD proteins associate with syndapin I and II and such interactions play a crucial role in endosomal recycling. Mol Biol Cell 2005; 16:3642 - 3658
   PubMed Web of Science ®Google Scholar
• Kessels MM, Qualmann B. Syndapins integrate N-WASP in receptor-mediated endocytosis. EMBO J 2002; 21:6083 - 6094
   PubMed Web of Science ®Google Scholar
• Qualmann B, Kelly RB. Syndapin isoforms participate in receptor-mediated endocytosis and actin organization. J Cell Biol 2000; 148:1047 - 1062
   PubMed Web of Science ®Google Scholar
• Kumar V, Fricke R, Bhar D, Reddy-Alla S, Krishnan KS, Bogdan S, et al. Syndapin promotes formation of a postsynaptic membrane system in Drosophila. Mol Biol Cell 2009; 20:2254 - 2264
   PubMed Web of Science ®Google Scholar
• Wang Q, Navarro MV, Peng G, Molinelli E, Lin GS, Judson BL, et al. Molecular mechanism of membrane constriction and tubulation mediated by the F-BAR protein Pacsin/Syndapin. Proc Natl Acad Sci USA 2009; 106:12700 - 12705
   PubMed Web of Science ®Google Scholar
• Ho HY, Rohatgi R, Lebensohn AM, Le M, Li J, Gygi SP, et al. Toca-1 mediates Cdc42-dependent actin nucleation by activating the N-WASP-WIP complex. Cell 2004; 118:203 - 216
   PubMed Web of Science ®Google Scholar
• Takano K, Toyooka K, Suetsugu S. EFC/F-BAR proteins and the N-WASP-WIP complex induce membrane curvature-dependent actin polymerization. EMBO J 2008;
   PubMed Web of Science ®Google Scholar
• Chitu V, Pixley FJ, Macaluso F, Larson DR, Condeelis J, Yeung YG, et al. The PCH family member MAYP/ PSTPIP2 directly regulates F-actin bundling and enhances filopodia formation and motility in macrophages. Mol Biol Cell 2005; 16:2947 - 2959
   PubMed Web of Science ®Google Scholar
• Tian L, Nelson DL, Stewart DM. Cdc42-interacting protein 4 mediates binding of the Wiskott-Aldrich syndrome protein to microtubules. J Biol Chem 2000; 275:7854 - 7861
   PubMed Web of Science ®Google Scholar
• Fricke R, Gohl C, Dharmalingam E, Grevelhorster A, Zahedi B, et al. Drosophila Cip4/Toca-1 Integrates Membrane Trafficking and Actin Dynamics through WASP and SCAR/WAVE. Curr Biol 2009; 19:1429 - 1437
   PubMed Web of Science ®Google Scholar
• Giuliani C, Troglio F, Bai Z, Patel FB, Zucconi A, Malabarba MG, et al. Requirements for F-BAR proteins TOCA-1 and TOCA-2 in actin dynamics and membrane trafficking during Caenorhabditis elegans oocyte growth and embryonic epidermal morphogenesis. PLoS Genet 2009; 5:1000675
   Web of Science ®Google Scholar
• Bu W, Chou AM, Lim KB, Sudhaharan T, Ahmed S. The Toca-1-N-WASP complex links filopodial formation to endocytosis. J Biol Chem 2009; 284:11622 - 11636
   PubMed Web of Science ®Google Scholar
• Ju YT, Chang AC, She BR, Tsaur ML, Hwang HM, Chao CC, et al. gas7: A gene expressed preferentially in growth-arrested fibroblasts and terminally differentiated Purkinje neurons affects neurite formation. Proc Natl Acad Sci USA 1998; 95:11423 - 11428
   PubMed Web of Science ®Google Scholar
• Lortie K, Huang D, Chakravarthy B, Comas T, Hou ST, Lin-Chao S, et al. The gas7 protein potentiates NGF-mediated differentiation of PC12 cells. Brain Res 2005; 1036:27 - 34
   PubMed Web of Science ®Google Scholar
• Chao CC, Chang PY, Lu HH. Human Gas7 isoforms homologous to mouse transcripts differentially induce neurite outgrowth. J Neurosci Res 2005; 81:153 - 162
   PubMed Web of Science ®Google Scholar
• She BR, Liou GG, Lin-Chao S. Association of the growth-arrest-specific protein Gas7 with F-actin induces reorganization of microfilaments and promotes membrane outgrowth. Exp Cell Res 2002; 273:34 - 44
   PubMed Web of Science ®Google Scholar
• Yeung YG, Soldera S, Stanley ER. A novel macrophage actin-associated protein (MAYP) is tyrosinephosphorylated following colony stimulating factor-1 stimulation. J Biol Chem 1998; 273:30638 - 30642
   PubMed Web of Science ®Google Scholar
• Wu Y, Spencer SD, Lasky LA. Tyrosine phosphorylation regulates the SH3-mediated binding of the Wiskott-Aldrich syndrome protein to PSTPIP, a cytoskeletal-associated protein. J Biol Chem 1998; 273:5765 - 5770
   PubMed Web of Science ®Google Scholar
• Sakaushi S, Inoue K, Zushi H, Senda-Murata K, Fukada T, Oka S, et al. Dynamic behavior of FCHO1 revealed by live-cell imaging microscopy: its possible involvement in clathrin-coated vesicle formation. Biosci Biotechnol Biochem 2007; 71:1764 - 1768
   PubMed Web of Science ®Google Scholar
• Tamura K, Dudley J, Nei M, Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 2007; 24:1596 - 1599
   PubMed Web of Science ®Google Scholar
• Konagurthu AS, Whisstock JC, Stuckey PJ, Lesk AM. MUSTANG: a multiple structural alignment algorithm. Proteins 2006; 64:559 - 574
   PubMed Web of Science ®Google Scholar
• Krieger E, Koraimann G, Vriend G. Increasing the precision of comparative models with YASARA NOVA—a self-parameterizing force field. Proteins 2002; 47:393 - 402
   PubMed Web of Science ®Google Scholar
• Schneider A, Dessimoz C, Gonnet GH. OMA Browser—exploring orthologous relations across 352 complete genomes. Bioinformatics 2007; 23:2180 - 2182
   PubMed Web of Science ®Google Scholar
• Katoh K, Kuma K, Toh H, Miyata T. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res 2005; 33:511 - 518
   PubMed Web of Science ®Google Scholar
• Waterhouse AM, Procter JB, Martin DM, Clamp M, Barton GJ. Jalview Version 2—a multiple sequence alignment editor and analysis workbench. Bioinformatics 2009; 25:1189 - 1191
   PubMed Web of Science ®Google Scholar
• Li W, Godzik A. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 2006; 22:1658 - 1659
   PubMed Web of Science ®Google Scholar
• Eddy SR. Profile hidden Markov models. Bioinformatics 1998; 14:755 - 763
   PubMed Web of Science ®Google Scholar
• The universal protein resource (UniProt). Nucleic Acids Res 2008; 36:190 - 195
   PubMed Web of Science ®Google Scholar
• Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4:406 - 425
   PubMed Web of Science ®Google Scholar
• Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985; 783 - 791
   Web of Science ®Google Scholar
• Ooi HS, Kwo CY, Wildpaner M, Sirota FL, Eisenhaber B, Maurer-Stroh S, et al. ANNIE: integrated de novo protein sequence annotation. Nucleic Acids Res 2009; 37:435 - 440
   Google Scholar
• Marchler-Bauer A, Bryant SH. CD-Search: protein domain annotations on the fly. Nucleic Acids Res 2004; 32:327 - 331
   PubMed Web of Science ®Google Scholar
• Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol 1990; 215:403 - 410
   PubMed Web of Science ®Google Scholar
• Wheeler DL, Barrett T, Benson DA, Bryant SH, Canese K, Chetvernin V, et al. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 2006; 34:173 - 180
   PubMed Web of Science ®Google Scholar