Association of cigarette smoking and CRP levels with DNA methylation in α-1 antitrypsin deficiency

References

• Wan ES, Silverman EK. Genetics of COPD and emphysema. Chest 2009; 136:859 - 66; http://dx.doi.org/10.1378/chest.09-0555; PMID: 19736190
   PubMed Web of Science ®Google Scholar
• Pillai SG, Ge D, Zhu G, Kong X, Shianna KV, Need AC, et al, ICGN Investigators. A genome-wide association study in chronic obstructive pulmonary disease (COPD): identification of two major susceptibility loci. PLoS Genet 2009; 5:e1000421; http://dx.doi.org/10.1371/journal.pgen.1000421; PMID: 19300482
   PubMed Web of Science ®Google Scholar
• DeMeo DL, Mariani T, Bhattacharya S, Srisuma S, Lange C, Litonjua A, et al. Integration of genomic and genetic approaches implicates IREB2 as a COPD susceptibility gene. Am J Hum Genet 2009; 85:493 - 502; http://dx.doi.org/10.1016/j.ajhg.2009.09.004; PMID: 19800047
   PubMed Web of Science ®Google Scholar
• Cho MH, Boutaoui N, Klanderman BJ, Sylvia JS, Ziniti JP, Hersh CP, et al. Variants in FAM13A are associated with chronic obstructive pulmonary disease. Nat Genet 2010; 42:200 - 2; http://dx.doi.org/10.1038/ng.535; PMID: 20173748
   PubMed Web of Science ®Google Scholar
• Liu JZ, Tozzi F, Waterworth DM, Pillai SG, Muglia P, Middleton L, et al, Wellcome Trust Case Control Consortium. Meta-analysis and imputation refines the association of 15q25 with smoking quantity. Nat Genet 2010; 42:436 - 40; http://dx.doi.org/10.1038/ng.572; PMID: 20418889
   PubMed Web of Science ®Google Scholar
• Tobacco and Genetics Consortium. Genome-wide meta-analyses identify multiple loci associated with smoking behavior. Nat Genet 2010; 42:441 - 7; http://dx.doi.org/10.1038/ng.571; PMID: 20418890
   PubMed Web of Science ®Google Scholar
• Thorgeirsson TE, Gudbjartsson DF, Surakka I, Vink JM, Amin N, Geller F, et al, ENGAGE Consortium. Sequence variants at CHRNB3-CHRNA6 and CYP2A6 affect smoking behavior. Nat Genet 2010; 42:448 - 53; http://dx.doi.org/10.1038/ng.573; PMID: 20418888
   PubMed Web of Science ®Google Scholar
• Demeo DL, Sandhaus RA, Barker AF, Brantly ML, Eden E, McElvaney NG, et al. Determinants of airflow obstruction in severe alpha-1-antitrypsin deficiency. Thorax 2007; 62:806 - 13; http://dx.doi.org/10.1136/thx.2006.075846; PMID: 17389752
   PubMed Web of Science ®Google Scholar
• Dahl M, Vestbo J, Lange P, Bojesen SE, Tybjaerg-Hansen A, Nordestgaard BG. C-reactive protein as a predictor of prognosis in chronic obstructive pulmonary disease. Am J Respir Crit Care Med 2007; 175:250 - 5; http://dx.doi.org/10.1164/rccm.200605-713OC; PMID: 17053205
   PubMed Web of Science ®Google Scholar
• Smith IM, Mydlarz WK, Mithani SK, Califano JA. DNA global hypomethylation in squamous cell head and neck cancer associated with smoking, alcohol consumption and stage. Int J Cancer 2007; 121:1724 - 8; http://dx.doi.org/10.1002/ijc.22889; PMID: 17582607
   PubMed Web of Science ®Google Scholar
• Zhu ZZ, Hou L, Bollati V, Tarantini L, Marinelli B, Cantone L, et al. Predictors of global methylation levels in blood DNA of healthy subjects: a combined analysis. Int J Epidemiol 2012; 41:126 - 39; http://dx.doi.org/10.1093/ije/dyq154; PMID: 20846947
   PubMed Web of Science ®Google Scholar
• Laird PW. Principles and challenges of genomewide DNA methylation analysis. Nat Rev Genet 2010; 11:191 - 203; http://dx.doi.org/10.1038/nrg2732; PMID: 20125086
   PubMed Web of Science ®Google Scholar
• Christensen BC, Houseman EA, Marsit CJ, Zheng S, Wrensch MR, Wiemels JL, et al. Aging and environmental exposures alter tissue-specific DNA methylation dependent upon CpG island context. PLoS Genet 2009; 5:e1000602; http://dx.doi.org/10.1371/journal.pgen.1000602; PMID: 19680444
   PubMed Web of Science ®Google Scholar
• Breitling LP, Yang R, Korn B, Burwinkel B, Brenner H. Tobacco-smoking-related differential DNA methylation: 27K discovery and replication. Am J Hum Genet 2011; 88:450 - 7; http://dx.doi.org/10.1016/j.ajhg.2011.03.003; PMID: 21457905
   PubMed Web of Science ®Google Scholar
• Liu J, Morgan M, Hutchison K, Calhoun VD. A study of the influence of sex on genome wide methylation. PLoS One 2010; 5:e10028; http://dx.doi.org/10.1371/journal.pone.0010028; PMID: 20386599
   PubMed Web of Science ®Google Scholar
• Stein S, Ott MG, Schultze-Strasser S, Jauch A, Burwinkel B, Kinner A, et al. Genomic instability and myelodysplasia with monosomy 7 consequent to EVI1 activation after gene therapy for chronic granulomatous disease. Nat Med 2010; 16:198 - 204; http://dx.doi.org/10.1038/nm.2088; PMID: 20098431
   PubMed Web of Science ®Google Scholar
• Chen YA, Choufani S, Ferreira JC, Grafodatskaya D, Butcher DT, Weksberg R. Sequence overlap between autosomal and sex-linked probes on the Illumina HumanMethylation27 microarray. Genomics 2011; 97:214 - 22; http://dx.doi.org/10.1016/j.ygeno.2010.12.004; PMID: 21211562
   PubMed Web of Science ®Google Scholar
• Bibikova M, Chudin E, Wu B, Zhou L, Garcia EW, Liu Y, et al. Human embryonic stem cells have a unique epigenetic signature. Genome Res 2006; 16:1075 - 83; http://dx.doi.org/10.1101/gr.5319906; PMID: 16899657
   PubMed Web of Science ®Google Scholar
• Kim DH, Kim JS, Ji YI, Shim YM, Kim H, Han J, et al. Hypermethylation of RASSF1A promoter is associated with the age at starting smoking and a poor prognosis in primary non-small cell lung cancer. Cancer Res 2003; 63:3743 - 6; PMID: 12839968
   PubMed Web of Science ®Google Scholar
• Marsit CJ, Kim DH, Liu M, Hinds PW, Wiencke JK, Nelson HH, et al. Hypermethylation of RASSF1A and BLU tumor suppressor genes in non-small cell lung cancer: implications for tobacco smoking during adolescence. Int J Cancer 2005; 114:219 - 23; http://dx.doi.org/10.1002/ijc.20714; PMID: 15540210
   PubMed Web of Science ®Google Scholar
• Satta R, Maloku E, Zhubi A, Pibiri F, Hajos M, Costa E, et al. Nicotine decreases DNA methyltransferase 1 expression and glutamic acid decarboxylase 67 promoter methylation in GABAergic interneurons. Proc Natl Acad Sci U S A 2008; 105:16356 - 61; http://dx.doi.org/10.1073/pnas.0808699105; PMID: 18852456
   PubMed Web of Science ®Google Scholar
• Baccarelli A, Tarantini L, Wright RO, Bollati V, Litonjua AA, Zanobetti A, et al. Repetitive element DNA methylation and circulating endothelial and inflammation markers in the VA normative aging study. Epigenetics 2010; 5:222 - 8; http://dx.doi.org/10.4161/epi.5.3.11377; PMID: 20305373
   PubMed Web of Science ®Google Scholar
• R Development Core Team. R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing 2010. http://www.R-project.org
   Google Scholar
• Davis S, Du P, Bilke S. methylumi: Handle Illumina methylation data. 2010; R package version 1.6.1.
   Google Scholar
• Fox J, Weisberg S. An R Companion to Applied Regression. Second Edition. Thousand Oaks, CA: Sage, 2010 http://socserv.socsci.mcmaster.ca/jfox/Books/Companion
   Google Scholar
• Pinheiro J, Bates D, DebRoy S, Sarkar D and the R Core team. nlme: Linear and Nonlinear Mixed Effects Models. 2009; R package version 3.1-96.
   Google Scholar