1,899
Views
50
CrossRef citations to date
0
Altmetric
Research Paper

First evidence of DNA methylation in insect Tribolium castaneum

Environmental regulation of DNA methylation within heterochromatin

, , &
Pages 534-541 | Received 27 Feb 2013, Accepted 01 Apr 2013, Published online: 17 Apr 2013

References

  • Bird A. DNA methylation patterns and epigenetic memory. Genes Dev 2002; 16:6 - 21; http://dx.doi.org/10.1101/gad.947102; PMID: 11782440
  • Feil R, Khosla S. Genomic imprinting in mammals: an interplay between chromatin and DNA methylation?. Trends Genet 1999; 15:431 - 5; http://dx.doi.org/10.1016/S0168-9525(99)01822-3; PMID: 10529801
  • Suzuki MM, Bird A. DNA methylation landscapes: provocative insights from epigenomics. Nat Rev Genet 2008; 9:465 - 76; http://dx.doi.org/10.1038/nrg2341; PMID: 18463664
  • Field LM, Lyko F, Mandrioli M, Prantera G. DNA methylation in insects. Insect Mol Biol 2004; 13:109 - 15; http://dx.doi.org/10.1111/j.0962-1075.2004.00470.x; PMID: 15056357
  • Xiang H, Zhu J, Chen Q, Dai F, Li X, Li M, et al. Single base-resolution methylome of the silkworm reveals a sparse epigenomic map. Nat Biotechnol 2010; 28:516 - 20; http://dx.doi.org/10.1038/nbt.1626; PMID: 20436463
  • Lyko F, Foret S, Kucharski R, Wolf S, Falckenhayn C, Maleszka R. The honey bee epigenomes: differential methylation of brain DNA in queens and workers. PLoS Biol 2010; 8:e1000506; http://dx.doi.org/10.1371/journal.pbio.1000506; PMID: 21072239
  • Kucharski R, Maleszka J, Foret S, Maleszka R. Nutritional control of reproductive status in honeybees via DNA methylation. Science 2008; 319:1827 - 30; http://dx.doi.org/10.1126/science.1153069; PMID: 18339900
  • Wang Y, Jorda M, Jones PL, Maleszka R, Ling X, Robertson HM, et al. Functional CpG methylation system in a social insect. Science 2006; 314:645 - 7; http://dx.doi.org/10.1126/science.1135213; PMID: 17068262
  • Walsh TK, Brisson JA, Robertson HM, Gordon K, Jaubert-Possamai S, Tagu D, et al. A functional DNA methylation system in the pea aphid, Acyrthosiphon pisum. Insect Mol Biol 2010; 19:Suppl 2 215 - 28; http://dx.doi.org/10.1111/j.1365-2583.2009.00974.x; PMID: 20482652
  • Zemach A, McDaniel IE, Silva P, Zilberman D. Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science 2010; 328:916 - 9; http://dx.doi.org/10.1126/science.1186366; PMID: 20395474
  • Glastad KM, Hunt BG, Yi SV, Goodisman MAD. DNA methylation in insects: on the brink of the epigenomic era. Insect Mol Biol 2011; 20:553 - 65; http://dx.doi.org/10.1111/j.1365-2583.2011.01092.x; PMID: 21699596
  • Richards S, Gibbs RA, Weinstock GM, Brown SJ, Denell R, Beeman RW, et al, Tribolium Genome Sequencing Consortium. The genome of the model beetle and pest Tribolium castaneum. Nature 2008; 452:949 - 55; http://dx.doi.org/10.1038/nature06784; PMID: 18362917
  • Goll MG, Bestor TH. Eukaryotic cytosine methyltransferases. Annu Rev Biochem 2005; 74:481 - 514; http://dx.doi.org/10.1146/annurev.biochem.74.010904.153721; PMID: 15952895
  • Feng S, Jacobsen SE, Reik W. Epigenetic reprogramming in plant and animal development. Science 2010; 330:622 - 7; http://dx.doi.org/10.1126/science.1190614; PMID: 21030646
  • Krauss V, Eisenhardt C, Unger T. The genome of the stick insect Medauroidea extradentata is strongly methylated within genes and repetitive DNA. PLoS One 2009; 4:e7223; http://dx.doi.org/10.1371/journal.pone.0007223; PMID: 19787064
  • Mandrioli M. Cytogenetic characterization of telomeres in the holocentric chromosomes of the lepidopteran Mamestra brassicae.. Chromosome Res 2002; 10:279 - 86; http://dx.doi.org/10.1023/A:1016515607278; PMID: 12199141
  • Mandrioli M, Volpi N. The genome of the lepidopteran Mamestra brassicae has a vertebrate-like content of methyl-cytosine. Genetica 2003; 119:187 - 91; http://dx.doi.org/10.1023/A:1026016021415; PMID: 14620958
  • Mandrioli M, Azzoni P, Lombardo G, Manicardi GC. Composition and epigenetic markers of heterochromatin in the aphid Aphis nerii (Hemiptera: Aphididae). Cytogenet Genome Res 2011; 133:67 - 77; http://dx.doi.org/10.1159/000323510; PMID: 21273762
  • Lyko F, Maleszka R. Insects as innovative models for functional studies of DNA methylation. Trends Genet 2011; 27:127 - 31; http://dx.doi.org/10.1016/j.tig.2011.01.003; PMID: 21288591
  • Kangaspeska S, Stride B, Métivier R, Polycarpou-Schwarz M, Ibberson D, Carmouche RP, et al. Transient cyclical methylation of promoter DNA. Nature 2008; 452:112 - 5; http://dx.doi.org/10.1038/nature06640; PMID: 18322535
  • Métivier R, Gallais R, Tiffoche C, Le Péron C, Jurkowska RZ, Carmouche RP, et al. Cyclical DNA methylation of a transcriptionally active promoter. Nature 2008; 452:45 - 50; http://dx.doi.org/10.1038/nature06544; PMID: 18322525
  • Feliciello I, Chinali G, Ugarković Đ. Structure and population dynamics of the major satellite DNA in the red flour beetle Tribolium castaneum. Genetica 2011; 139:999 - 1008; http://dx.doi.org/10.1007/s10709-011-9601-1; PMID: 21837441
  • Ito S, D’Alessio AC, Taranova OV, Hong K, Sowers LC, Zhang Y. Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification. Nature 2010; 466:1129 - 33; http://dx.doi.org/10.1038/nature09303; PMID: 20639862
  • Ugarković Đ, Podnar M, Plohl M. Satellite DNA of the red flour beetle Tribolium castaneum--comparative study of satellites from the genus Tribolium.. Mol Biol Evol 1996; 13:1059 - 66; http://dx.doi.org/10.1093/oxfordjournals.molbev.a025668; PMID: 8865660
  • Pezer Ž, Ugarković Đ. Satellite DNA-associated siRNAs as mediators of heat shock response in insects. RNA Biol 2012; 9:587 - 95; http://dx.doi.org/10.4161/rna.20019; PMID: 22647527
  • Feliciello I, Picariello O, Chinali G. The first characterisation of the overall variability of repetitive units in a species reveals unexpected features of satellite DNA. Gene 2005; 349:153 - 64; http://dx.doi.org/10.1016/j.gene.2004.12.001; PMID: 15777738
  • Feliciello I, Picariello O, Chinali G. Intra-specific variability and unusual organization of the repetitive units in a satellite DNA from Rana dalmatina: molecular evidence of a new mechanism of DNA repair acting on satellite DNA. Gene 2006; 383:81 - 92; http://dx.doi.org/10.1016/j.gene.2006.07.016; PMID: 16956734
  • Kunert N, Marhold J, Stanke J, Stach D, Lyko FA. A Dnmt2-like protein mediates DNA methylation in Drosophila. Development 2003; 130:5083 - 90; http://dx.doi.org/10.1242/dev.00716; PMID: 12944428
  • Zakrzewski F, Weisshaar B, Fuchs J, Bannack E, Minoche AE, Dohm JC, et al. Epigenetic profiling of heterochromatic satellite DNA. Chromosoma 2011; 120:409 - 22; http://dx.doi.org/10.1007/s00412-011-0325-x; PMID: 21594600
  • Lippman Z, Martienssen R. The role of RNA interference in heterochromatic silencing. Nature 2004; 431:364 - 70; http://dx.doi.org/10.1038/nature02875; PMID: 15372044
  • Seong KH, Li D, Shimizu H, Nakamura R, Ishii S. Inheritance of stress-induced, ATF-2-dependent epigenetic change. Cell 2011; 145:1049 - 61; http://dx.doi.org/10.1016/j.cell.2011.05.029; PMID: 21703449
  • Jolly C, Metz A, Govin J, Vigneron M, Turner BM, Khochbin S, et al. Stress-induced transcription of satellite III repeats. J Cell Biol 2004; 164:25 - 33; http://dx.doi.org/10.1083/jcb.200306104; PMID: 14699086
  • Valgardsdottir R, Chiodi I, Giordano M, Cobianchi F, Riva S, Biamonti G. Structural and functional characterization of noncoding repetitive RNAs transcribed in stressed human cells. Mol Biol Cell 2005; 16:2597 - 604; http://dx.doi.org/10.1091/mbc.E04-12-1078; PMID: 15788562
  • Pecinka A, Dinh HQ, Baubec T, Rosa M, Lettner N, Mittelsten Scheid O. Epigenetic regulation of repetitive elements is attenuated by prolonged heat stress in Arabidopsis. Plant Cell 2010; 22:3118 - 29; http://dx.doi.org/10.1105/tpc.110.078493; PMID: 20876829
  • Pezer Ž, Brajković J, Feliciello I, Ugarković Đ. Transcription of Satellite DNAs in Insects. Prog Mol Subcell Biol 2011; 51:161 - 78; http://dx.doi.org/10.1007/978-3-642-16502-3_8; PMID: 21287138
  • Hu Y, Zhang L, He S, Huang M, Tan J, Zhao L, et al. Cold stress selectively unsilences tandem repeats in heterochromatin associated with accumulation of H3K9ac. Plant Cell Environ 2012; 35:2130 - 42; http://dx.doi.org/10.1111/j.1365-3040.2012.02541.x; PMID: 22616903
  • Eymery A, Callanan M, Vourc’h C. The secret message of heterochromatin: new insights into the mechanisms and function of centromeric and pericentric repeat sequence transcription. Int J Dev Biol 2009; 53:259 - 68; http://dx.doi.org/10.1387/ijdb.082673ae; PMID: 19412885
  • Hall LE, Mitchell SE, O’Neill RJ. Pericentric and centromeric transcription: a perfect balance required. Chromosome Res 2012; 20:535 - 46; http://dx.doi.org/10.1007/s10577-012-9297-9; PMID: 22760449
  • Eymery A, Horard B, El Atifi-Borel M, Fourel G, Berger F, Vitte AL, et al. A transcriptomic analysis of human centromeric and pericentric sequences in normal and tumor cells. Nucleic Acids Res 2009; 37:6340 - 54; http://dx.doi.org/10.1093/nar/gkp639; PMID: 19720732
  • Tilman G, Arnoult N, Lenglez S, Van Beneden A, Loriot A, De Smet C, et al. Cancer-linked satellite 2 DNA hypomethylation does not regulate Sat2 non-coding RNA expression and is initiated by heat shock pathway activation. Epigenetics 2012; 7:903 - 13; http://dx.doi.org/10.4161/epi.21107; PMID: 22722874
  • Brajković J, Feliciello I, Bruvo-Mađarić B, Ugarković Đ. Satellite DNA-like elements associated with genes within euchromatin of the beetle Tribolium castaneum. G3: Genes, Genomes. Genetics 2012; 2:931 - 41
  • Kalendar R, Tanskanen J, Immonen S, Nevo E, Schulman AH. Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence. Proc Natl Acad Sci U S A 2000; 97:6603 - 7; http://dx.doi.org/10.1073/pnas.110587497; PMID: 10823912
  • Pezer Ž, Brajković J, Feliciello I, Ugarković D. Satellite DNA-mediated effects on genome regulation. Genome Dyn 2012; 7:153 - 69; http://dx.doi.org/10.1159/000337116; PMID: 22759818

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.