Transient reduction of 5-methylcytosine and 5-hydroxymethylcytosine is associated with active DNA demethylation during regeneration of zebrafish fin

References

• Wu SC, Zhang Y. Active DNA demethylation: many roads lead to Rome. Nat Rev Mol Cell Biol 2010; 11:607 - 20; http://dx.doi.org/10.1038/nrm2950; PMID: 20683471
   PubMed Web of Science ®Google Scholar
• Cedar H, Bergman Y. Programming of DNA methylation patterns. Annu Rev Biochem 2012; 81:97 - 117; http://dx.doi.org/10.1146/annurev-biochem-052610-091920; PMID: 22404632
   PubMed Web of Science ®Google Scholar
• Franchini DM, Schmitz KM, Petersen-Mahrt SK. 5-Methylcytosine DNA demethylation: more than losing a methyl group. Annu Rev Genet 2012; 46:419 - 41; http://dx.doi.org/10.1146/annurev-genet-110711-155451; PMID: 22974304
   PubMed Web of Science ®Google Scholar
• Goll MG, Bestor TH. Eukaryotic cytosine methyltransferases. Annu Rev Biochem 2005; 74:481 - 514; http://dx.doi.org/10.1146/annurev.biochem.74.010904.153721; PMID: 15952895
   PubMed Web of Science ®Google Scholar
• Jones PA. Functions of DNA methylation: islands, start sites, gene bodies and beyond. Nat Rev Genet 2012; 13:484 - 92; http://dx.doi.org/10.1038/nrg3230; PMID: 22641018
   PubMed Web of Science ®Google Scholar
• Zhu JK. Active DNA demethylation mediated by DNA glycosylases. Annu Rev Genet 2009; 43:143 - 66; http://dx.doi.org/10.1146/annurev-genet-102108-134205; PMID: 19659441
   PubMed Web of Science ®Google Scholar
• Niehrs C, Schäfer A. Active DNA demethylation by Gadd45 and DNA repair. Trends Cell Biol 2012; 22:220 - 7; http://dx.doi.org/10.1016/j.tcb.2012.01.002; PMID: 22341196
   PubMed Web of Science ®Google Scholar
• Branco MR, Ficz G, Reik W. Uncovering the role of 5-hydroxymethylcytosine in the epigenome. Nat Rev Genet 2012; 13:7 - 13; PMID: 22083101
   PubMed Web of Science ®Google Scholar
• Williams K, Christensen J, Helin K. DNA methylation: TET proteins-guardians of CpG islands?. EMBO Rep 2011; 13:28 - 35; http://dx.doi.org/10.1038/embor.2011.233; PMID: 22157888
   PubMed Web of Science ®Google Scholar
• Tan L, Shi YG. Tet family proteins and 5-hydroxymethylcytosine in development and disease. Development 2012; 139:1895 - 902; http://dx.doi.org/10.1242/dev.070771; PMID: 22569552
   PubMed Web of Science ®Google Scholar
• Akimenko MA, Marí-Beffa M, Becerra J, Géraudie J. Old questions, new tools, and some answers to the mystery of fin regeneration. Dev Dyn 2003; 226:190 - 201; http://dx.doi.org/10.1002/dvdy.10248; PMID: 12557198
   PubMed Web of Science ®Google Scholar
• Poss KD, Keating MT, Nechiporuk A. Tales of regeneration in zebrafish. Dev Dyn 2003; 226:202 - 10; http://dx.doi.org/10.1002/dvdy.10220; PMID: 12557199
   PubMed Web of Science ®Google Scholar
• Tanaka EM, Reddien PW. The cellular basis for animal regeneration. Dev Cell 2011; 21:172 - 85; http://dx.doi.org/10.1016/j.devcel.2011.06.016; PMID: 21763617
   PubMed Web of Science ®Google Scholar
• Slack JM. Amphibian muscle regeneration--dedifferentiation or satellite cells?. Trends Cell Biol 2006; 16:273 - 5; http://dx.doi.org/10.1016/j.tcb.2006.04.007; PMID: 16697200
   PubMed Web of Science ®Google Scholar
• Barrero MJ, Izpisua Belmonte JC. Regenerating the epigenome. EMBO Rep 2011; 12:208 - 15; http://dx.doi.org/10.1038/embor.2011.10; PMID: 21311559
   PubMed Web of Science ®Google Scholar
• Katsuyama T, Paro R. Epigenetic reprogramming during tissue regeneration. FEBS Lett 2011; 585:1617 - 24; http://dx.doi.org/10.1016/j.febslet.2011.05.010; PMID: 21569771
   PubMed Web of Science ®Google Scholar
• Thummel R, Burket CT, Hyde DR. Two different transgenes to study gene silencing and re-expression during zebrafish caudal fin and retinal regeneration. ScientificWorldJournal 2006; 6:Suppl 1 65 - 81; http://dx.doi.org/10.1100/tsw.2006.328; PMID: 17205188
   PubMedGoogle Scholar
• Yakushiji N, Suzuki M, Satoh A, Sagai T, Shiroishi T, Kobayashi H, et al. Correlation between Shh expression and DNA methylation status of the limb-specific Shh enhancer region during limb regeneration in amphibians. Dev Biol 2007; 312:171 - 82; http://dx.doi.org/10.1016/j.ydbio.2007.09.022; PMID: 17961537
   PubMed Web of Science ®Google Scholar
• Martin CC, Laforest L, Akimenko MA, Ekker M. A role for DNA methylation in gastrulation and somite patterning. Dev Biol 1999; 206:189 - 205; http://dx.doi.org/10.1006/dbio.1998.9105; PMID: 9986732
   PubMed Web of Science ®Google Scholar
• Mhanni AA, McGowan RA. Global changes in genomic methylation levels during early development of the zebrafish embryo. Dev Genes Evol 2004; 214:412 - 7; http://dx.doi.org/10.1007/s00427-004-0418-0; PMID: 15309635
   PubMed Web of Science ®Google Scholar
• MacKay AB, Mhanni AA, McGowan RA, Krone PH. Immunological detection of changes in genomic DNA methylation during early zebrafish development. Genome 2007; 50:778 - 85; http://dx.doi.org/10.1139/G07-055; PMID: 17893737
   PubMed Web of Science ®Google Scholar
• Almeida RD, Loose M, Sottile V, Matsa E, Denning C, Young L, et al. 5-hydroxymethyl-cytosine enrichment of non-committed cells is not a universal feature of vertebrate development. Epigenetics 2012; 7:383 - 9; http://dx.doi.org/10.4161/epi.19375; PMID: 22419071
   PubMed Web of Science ®Google Scholar
• Urasaki A, Morvan G, Kawakami K. Functional dissection of the Tol2 transposable element identified the minimal cis-sequence and a highly repetitive sequence in the subterminal region essential for transposition. Genetics 2006; 174:639 - 49; http://dx.doi.org/10.1534/genetics.106.060244; PMID: 16959904
   PubMed Web of Science ®Google Scholar
• Woods AL, Hall PA, Shepherd NA, Hanby AM, Waseem NH, Lane DP, et al. The assessment of proliferating cell nuclear antigen (PCNA) immunostaining in primary gastrointestinal lymphomas and its relationship to histological grade, S+G2+M phase fraction (flow cytometric analysis) and prognosis. Histopathology 1991; 19:21 - 7; http://dx.doi.org/10.1111/j.1365-2559.1991.tb00890.x; PMID: 1680784
   PubMed Web of Science ®Google Scholar
• Powell C, Elsaeidi F, Goldman D. Injury-dependent Müller glia and ganglion cell reprogramming during tissue regeneration requires Apobec2a and Apobec2b. J Neurosci 2012; 32:1096 - 109; http://dx.doi.org/10.1523/JNEUROSCI.5603-11.2012; PMID: 22262907
   PubMed Web of Science ®Google Scholar
• Poleo G, Brown CW, Laforest L, Akimenko MA. Cell proliferation and movement during early fin regeneration in zebrafish. Dev Dyn 2001; 221:380 - 90; http://dx.doi.org/10.1002/dvdy.1152; PMID: 11500975
   PubMed Web of Science ®Google Scholar
• Tittle RK, Sze R, Ng A, Nuckels RJ, Swartz ME, Anderson RM, et al. Uhrf1 and Dnmt1 are required for development and maintenance of the zebrafish lens. Dev Biol 2011; 350:50 - 63; http://dx.doi.org/10.1016/j.ydbio.2010.11.009; PMID: 21126517
   PubMed Web of Science ®Google Scholar
• MacKay AB, Mhanni AA, McGowan RA, Krone PH. Immunological detection of changes in genomic DNA methylation during early zebrafish development. Genome 2007; 50:778 - 85; http://dx.doi.org/10.1139/G07-055; PMID: 17893737
   PubMed Web of Science ®Google Scholar
• Nechiporuk A, Keating MT. A proliferation gradient between proximal and msxb-expressing distal blastema directs zebrafish fin regeneration. Development 2002; 129:2607 - 17; PMID: 12015289
   PubMed Web of Science ®Google Scholar