Effects of polysaccharopeptide from Trametes Versicolor and amoxicillin on the gut microbiome of healthy volunteers

References

• Neish AS. Microbes in gastrointestinal health and disease. Gastroenterology 2009; 136:65 - 80; http://dx.doi.org/10.1053/j.gastro.2008.10.080; PMID: 19026645
   PubMed Web of Science ®Google Scholar
• Guarner F, Malagelada JR. Gut flora in health and disease. Lancet 2003; 361:512 - 9; http://dx.doi.org/10.1016/S0140-6736(03)12489-0; PMID: 12583961
   PubMed Web of Science ®Google Scholar
• Stephen AM, Cummings JH. The microbial contribution to human faecal mass. J Med Microbiol 1980; 13:45 - 56; http://dx.doi.org/10.1099/00222615-13-1-45; PMID: 7359576
   PubMed Web of Science ®Google Scholar
• Jirillo E, Jirillo F, Magrone T. Healthy effects exerted by prebiotics, probiotics, and symbiotics with special reference to their impact on the immune system. Int J Vitam Nutr Res 2012; 82:200 - 8; http://dx.doi.org/10.1024/0300-9831/a000112; PMID: 23258401
   PubMed Web of Science ®Google Scholar
• Silk DB, Davis A, Vulevic J, Tzortzis G, Gibson GR. Clinical trial: the effects of a trans-galactooligosaccharide prebiotic on faecal microbiota and symptoms in irritable bowel syndrome. Aliment Pharmacol Ther 2009; 29:508 - 18; http://dx.doi.org/10.1111/j.1365-2036.2008.03911.x; PMID: 19053980
   PubMed Web of Science ®Google Scholar
• Bodera P. Influence of prebiotics on the human immune system (GALT). Recent Pat Inflamm Allergy Drug Discov 2008; 2:149 - 53; http://dx.doi.org/10.2174/187221308784543656; PMID: 19076004
   PubMedGoogle Scholar
• Lenoir-Wijnkoop I, Sanders ME, Cabana MD, Caglar E, Corthier G, Rayes N, Sherman PM, Timmerman HM, Vaneechoutte M, Van Loo J, et al. Probiotic and prebiotic influence beyond the intestinal tract. Nutr Rev 2007; 65:469 - 89; http://dx.doi.org/10.1111/j.1753-4887.2007.tb00272.x; PMID: 18038940
   PubMed Web of Science ®Google Scholar
• Ng TB. A review of research on the protein-bound polysaccharide (polysaccharopeptide, PSP) from the mushroom Coriolus versicolor (Basidiomycetes: Polyporaceae). Gen Pharmacol 1998; 30:1 - 4; http://dx.doi.org/10.1016/S0306-3623(97)00076-1; PMID: 9457474
   PubMedGoogle Scholar
• Wasser SP, Weis AL. Therapeutic effects of substances occurring in higher Basidiomycetes mushrooms: a modern perspective. Crit Rev Immunol 1999; 19:65 - 96; PMID: 9987601
   PubMed Web of Science ®Google Scholar
• Kidd PM. The use of mushroom glucans and proteoglycans in cancer treatment. Altern Med Rev 2000; 5:4 - 27; PMID: 10696116
   PubMedGoogle Scholar
• Fisher M, Yang LX. Anticancer effects and mechanisms of polysaccharide-K (PSK): implications of cancer immunotherapy. Anticancer Res 2002; 22:1737 - 54; PMID: 12168863
   PubMed Web of Science ®Google Scholar
• Yu ZT, Liu B, Mukherjee P, Newburg DS. Trametes versicolor extract modifies human fecal microbiota composition in vitro. Plant Foods Hum Nutr 2013; 68:107 - 12; http://dx.doi.org/10.1007/s11130-013-0342-4; PMID: 23435630
   PubMed Web of Science ®Google Scholar
• Dethlefsen L, Huse S, Sogin ML, Relman DA. The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. PLoS Biol 2008; 6:e280; http://dx.doi.org/10.1371/journal.pbio.0060280; PMID: 19018661
   PubMed Web of Science ®Google Scholar
• Jernberg C, Löfmark S, Edlund C, Jansson JK. Long-term impacts of antibiotic exposure on the human intestinal microbiota. Microbiology 2010; 156:3216 - 23; http://dx.doi.org/10.1099/mic.0.040618-0; PMID: 20705661
   PubMed Web of Science ®Google Scholar
• De La Cochetière MF, Durand T, Lalande V, Petit JC, Potel G, Beaugerie L. Effect of antibiotic therapy on human fecal microbiota and the relation to the development of Clostridium difficile. Microb Ecol 2008; 56:395 - 402; http://dx.doi.org/10.1007/s00248-007-9356-5; PMID: 18209965
   PubMed Web of Science ®Google Scholar
• Young VB, Schmidt TM. Antibiotic-associated diarrhea accompanied by large-scale alterations in the composition of the fecal microbiota. J Clin Microbiol 2004; 42:1203 - 6; http://dx.doi.org/10.1128/JCM.42.3.1203-1206.2004; PMID: 15004076
   PubMed Web of Science ®Google Scholar
• Sullivan A, Edlund C, Nord CE. Effect of antimicrobial agents on the ecological balance of human microflora. Lancet Infect Dis 2001; 1:101 - 14; http://dx.doi.org/10.1016/S1473-3099(01)00066-4; PMID: 11871461
   PubMedGoogle Scholar
• Swidsinski A, Loening-Baucke V, Kirsch S, Doerffel Y. [Functional biostructure of colonic microbiota (central fermenting area, germinal stock area and separating mucus layer) in healthy subjects and patients with diarrhea treated with Saccharomyces boulardii]. Gastroenterol Clin Biol 2010; 34:Suppl 1 S79 - 92; http://dx.doi.org/10.1016/S0399-8320(10)70025-7; PMID: 20889010
   PubMedGoogle Scholar
• Marteau P, Lepage P, Mangin I, Suau A, Doré J, Pochart P, Seksik P. Review article: gut flora and inflammatory bowel disease. Aliment Pharmacol Ther 2004; 20:Suppl 4 18 - 23; http://dx.doi.org/10.1111/j.1365-2036.2004.02062.x; PMID: 15352889
   PubMed Web of Science ®Google Scholar
• Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, Mende DR, Fernandes GR, Tap J, Bruls T, Batto JM, et al, MetaHIT Consortium. Enterotypes of the human gut microbiome. Nature 2011; 473:174 - 80; http://dx.doi.org/10.1038/nature09944; PMID: 21508958
   PubMed Web of Science ®Google Scholar
• Allen HK, Looft T, Bayles DO, Humphrey S, Levine UY, Alt D, Stanton TB. Antibiotics in feed induce prophages in swine fecal microbiomes. MBio 2011; 2; http://dx.doi.org/10.1128/mBio.00260-11; PMID: 22128350
   PubMed Web of Science ®Google Scholar
• Janczyk P, Pieper R, Souffrant WB, Bimczok D, Rothkötter HJ, Smidt H. Parenteral long-acting amoxicillin reduces intestinal bacterial community diversity in piglets even 5 weeks after the administration. ISME J 2007; 1:180 - 3; http://dx.doi.org/10.1038/ismej.2007.29; PMID: 18043627
   PubMed Web of Science ®Google Scholar
• Looft T, Allen HK. Collateral effects of antibiotics on mammalian gut microbiomes. Gut Microbes 2012; 3:463 - 7; http://dx.doi.org/10.4161/gmic.21288; PMID: 22825498
   PubMed Web of Science ®Google Scholar
• Wu XY, Chapman T, Trott DJ, Bettelheim K, Do TN, Driesen S, Walker MJ, Chin J. Comparative analysis of virulence genes, genetic diversity, and phylogeny of commensal and enterotoxigenic Escherichia coli isolates from weaned pigs. Appl Environ Microbiol 2007; 73:83 - 91; http://dx.doi.org/10.1128/AEM.00990-06; PMID: 17056683
   PubMed Web of Science ®Google Scholar
• Fairbrother JM, Nadeau E, Gyles CL. Escherichia coli in postweaning diarrhea in pigs: an update on bacterial types, pathogenesis, and prevention strategies. Anim Health Res Rev 2005; 6:17 - 39; http://dx.doi.org/10.1079/AHR2005105; PMID: 16164007
   PubMedGoogle Scholar
• Frank DN, St Amand AL, Feldman RA, Boedeker EC, Harpaz N, Pace NR. Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases. Proc Natl Acad Sci U S A 2007; 104:13780 - 5; http://dx.doi.org/10.1073/pnas.0706625104; PMID: 17699621
   PubMed Web of Science ®Google Scholar
• Seksik P, Rigottier-Gois L, Gramet G, Sutren M, Pochart P, Marteau P, Jian R, Doré J. Alterations of the dominant faecal bacterial groups in patients with Crohn’s disease of the colon. Gut 2003; 52:237 - 42; http://dx.doi.org/10.1136/gut.52.2.237; PMID: 12524406
   PubMed Web of Science ®Google Scholar
• Martin HM, Campbell BJ, Hart CA, Mpofu C, Nayar M, Singh R, Englyst H, Williams HF, Rhodes JM. Enhanced Escherichia coli adherence and invasion in Crohn’s disease and colon cancer. Gastroenterology 2004; 127:80 - 93; http://dx.doi.org/10.1053/j.gastro.2004.03.054; PMID: 15236175
   PubMed Web of Science ®Google Scholar
• Lupp C, Robertson ML, Wickham ME, Sekirov I, Champion OL, Gaynor EC, Finlay BB. Host-mediated inflammation disrupts the intestinal microbiota and promotes the overgrowth of Enterobacteriaceae. Cell Host Microbe 2007; 2:204; http://dx.doi.org/10.1016/j.chom.2007.08.002; PMID: 18030708
   PubMed Web of Science ®Google Scholar
• Heimesaat MM, Fischer A, Siegmund B, Kupz A, Niebergall J, Fuchs D, Jahn HK, Freudenberg M, Loddenkemper C, Batra A, et al. Shift towards pro-inflammatory intestinal bacteria aggravates acute murine colitis via Toll-like receptors 2 and 4. PLoS One 2007; 2:e662; http://dx.doi.org/10.1371/journal.pone.0000662; PMID: 17653282
   PubMed Web of Science ®Google Scholar
• Barman M, Unold D, Shifley K, Amir E, Hung K, Bos N, Salzman N. Enteric salmonellosis disrupts the microbial ecology of the murine gastrointestinal tract. Infect Immun 2008; 76:907 - 15; http://dx.doi.org/10.1128/IAI.01432-07; PMID: 18160481
   PubMed Web of Science ®Google Scholar
• Garrett WS, Gallini CA, Yatsunenko T, Michaud M, DuBois A, Delaney ML, Punit S, Karlsson M, Bry L, Glickman JN, et al. Enterobacteriaceae act in concert with the gut microbiota to induce spontaneous and maternally transmitted colitis. Cell Host Microbe 2010; 8:292 - 300; http://dx.doi.org/10.1016/j.chom.2010.08.004; PMID: 20833380
   PubMed Web of Science ®Google Scholar
• Wohlgemuth S, Haller D, Blaut M, Loh G. Reduced microbial diversity and high numbers of one single Escherichia coli strain in the intestine of colitic mice. Environ Microbiol 2009; 11:1562 - 71; http://dx.doi.org/10.1111/j.1462-2920.2009.01883.x; PMID: 19245530
   PubMed Web of Science ®Google Scholar
• Vrieze A, Out C, Fuentes S, Jonker L, Reuling I, Kootte RS, van Nood E, Holleman F, Knaapen M, Romijn JA, et al. Impact of oral vancomycin on gut microbiota, bile acid metabolism, and insulin sensitivity. J Hepatol 2014; 60:824 - 31; http://dx.doi.org/10.1016/j.jhep.2013.11.034; PMID: 24316517
   PubMed Web of Science ®Google Scholar
• Badia R, Lizardo R, Martinez P, Brufau J. Oligosaccharide structure determines prebiotic role of β-galactomannan against Salmonella enterica ser. Typhimurium in vitro. Gut Microbes 2013; 4:72 - 5; http://dx.doi.org/10.4161/gmic.22728; PMID: 23137964
   PubMedGoogle Scholar
• Van den Abbeele P, Verstraete W, El Aidy S, Geirnaert A, Van de Wiele T. Prebiotics, faecal transplants and microbial network units to stimulate biodiversity of the human gut microbiome. Microb Biotechnol 2013; 6:335 - 40; http://dx.doi.org/10.1111/1751-7915.12049; PMID: 23594389
   PubMedGoogle Scholar
• Kondepudi KK, Ambalam P, Nilsson I, Wadström T, Ljungh A. Prebiotic-non-digestible oligosaccharides preference of probiotic bifidobacteria and antimicrobial activity against Clostridium difficile. Anaerobe 2012; 18:489 - 97; http://dx.doi.org/10.1016/j.anaerobe.2012.08.005; PMID: 22940065
   PubMed Web of Science ®Google Scholar
• Polari L, Ojansivu P, Mäkelä S, Eckerman C, Holmbom B, Salminen S. Galactoglucomannan extracted from spruce (Picea abies) as a carbohydrate source for probiotic bacteria. J Agric Food Chem 2012; 60:11037 - 43; http://dx.doi.org/10.1021/jf303741h; PMID: 23067113
   PubMed Web of Science ®Google Scholar
• Oozeer R, van Limpt K, Ludwig T, Ben Amor K, Martin R, Wind RD, Boehm G, Knol J. Intestinal microbiology in early life: specific prebiotics can have similar functionalities as human-milk oligosaccharides. Am J Clin Nutr 2013; 98:561S - 71S; http://dx.doi.org/10.3945/ajcn.112.038893; PMID: 23824728
   PubMed Web of Science ®Google Scholar
• Rop O, Mlcek J, Jurikova T. Beta-glucans in higher fungi and their health effects. Nutr Rev 2009; 67:624 - 31; http://dx.doi.org/10.1111/j.1753-4887.2009.00230.x; PMID: 19906249
   PubMed Web of Science ®Google Scholar
• Chang ST, Wasser SP. The role of culinary-medicinal mushrooms on human welfare with a pyramid model for human health. International journal of medicinal mushrooms 2012; 14(2): 95-134.
   Google Scholar
• Chou WT, Sheih IC, Fang TJ. The applications of polysaccharides from various mushroom wastes as prebiotics in different systems. J Food Sci 2013; 78:M1041 - 8; http://dx.doi.org/10.1111/1750-3841.12160; PMID: 23701736
   PubMed Web of Science ®Google Scholar
• Edgar RC. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 2010; 26:2460 - 1; http://dx.doi.org/10.1093/bioinformatics/btq461; PMID: 20709691
   PubMed Web of Science ®Google Scholar
• Dowd SE, Callaway TR, Wolcott RD, Sun Y, McKeehan T, Hagevoort RG, Edrington TS. Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP). BMC Microbiol 2008; 8:125; http://dx.doi.org/10.1186/1471-2180-8-125; PMID: 18652685
   PubMed Web of Science ®Google Scholar
• Eren AM, Zozaya M, Taylor CM, Dowd SE, Martin DH, Ferris MJ. Exploring the diversity of Gardnerella vaginalis in the genitourinary tract microbiota of monogamous couples through subtle nucleotide variation. PLoS One 2011; 6:e26732; http://dx.doi.org/10.1371/journal.pone.0026732; PMID: 22046340
   PubMed Web of Science ®Google Scholar
• Dowd SE, Sun Y, Wolcott RD, Domingo A, Carroll JA. Bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP) for microbiome studies: bacterial diversity in the ileum of newly weaned Salmonella-infected pigs. Foodborne Pathog Dis 2008; 5:459 - 72; http://dx.doi.org/10.1089/fpd.2008.0107; PMID: 18713063
   PubMed Web of Science ®Google Scholar
• Swanson KS, Dowd SE, Suchodolski JS, Middelbos IS, Vester BM, Barry KA, Nelson KE, Torralba M, Henrissat B, Coutinho PM, et al. Phylogenetic and gene-centric metagenomics of the canine intestinal microbiome reveals similarities with humans and mice. ISME J 2011; 5:639 - 49; http://dx.doi.org/10.1038/ismej.2010.162; PMID: 20962874
   PubMed Web of Science ®Google Scholar
• DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, Huber T, Dalevi D, Hu P, Andersen GL. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol 2006; 72:5069 - 72; http://dx.doi.org/10.1128/AEM.03006-05; PMID: 16820507
   PubMed Web of Science ®Google Scholar