Specifying peripheral heterochromatin during nuclear lamina reassembly

References

• Bickmore WA, van Steensel B. Genome architecture: domain organization of interphase chromosomes. Cell 2013; 152:1270 - 84; http://dx.doi.org/10.1016/j.cell.2013.02.001; PMID: 23498936
   PubMed Web of Science ®Google Scholar
• Cavalli G, Misteli T. Functional implications of genome topology. Nat Struct Mol Biol 2013; 20:290 - 9; http://dx.doi.org/10.1038/nsmb.2474; PMID: 23463314
   PubMed Web of Science ®Google Scholar
• Collas P, Lund EG, Oldenburg AR. Closing the (nuclear) envelope on the genome: how nuclear lamins interact with promoters and modulate gene expression. Bioessays 2014; 36:75 - 83; http://dx.doi.org/10.1002/bies.201300138; PMID: 24272858
   PubMed Web of Science ®Google Scholar
• Bank EM, Gruenbaum Y. The nuclear lamina and heterochromatin: a complex relationship. Biochem Soc Trans 2011; 39:1705 - 9; http://dx.doi.org/10.1042/BST20110603; PMID: 22103511
   PubMed Web of Science ®Google Scholar
• Geyer PK, Vitalini MW, Wallrath LL. Nuclear organization: taking a position on gene expression. Curr Opin Cell Biol 2011; 23:354 - 9; http://dx.doi.org/10.1016/j.ceb.2011.03.002; PMID: 21450447
   PubMed Web of Science ®Google Scholar
• Meister P, Mango SE, Gasser SM. Locking the genome: nuclear organization and cell fate. Curr Opin Genet Dev 2011; 21:167 - 74; http://dx.doi.org/10.1016/j.gde.2011.01.023; PMID: 21345665
   PubMed Web of Science ®Google Scholar
• Reddy KL, Zullo JM, Bertolino E, Singh H. Transcriptional repression mediated by repositioning of genes to the nuclear lamina. Nature 2008; 452:243 - 7; http://dx.doi.org/10.1038/nature06727; PMID: 18272965
   PubMed Web of Science ®Google Scholar
• Shevelyov YY, Nurminsky DI. The nuclear lamina as a gene-silencing hub. Curr Issues Mol Biol 2012; 14:27 - 38; PMID: 21795760
   PubMed Web of Science ®Google Scholar
• Towbin BD, González-Aguilera C, Sack R, Gaidatzis D, Kalck V, Meister P, Askjaer P, Gasser SM. Step-wise methylation of histone H3K9 positions heterochromatin at the nuclear periphery. Cell 2012; 150:934 - 47; http://dx.doi.org/10.1016/j.cell.2012.06.051; PMID: 22939621
   PubMed Web of Science ®Google Scholar
• Zhou VW, Goren A, Bernstein BE. Charting histone modifications and the functional organization of mammalian genomes. Nat Rev Genet 2011; 12:7 - 18; http://dx.doi.org/10.1038/nrg2905; PMID: 21116306
   PubMed Web of Science ®Google Scholar
• Peric-Hupkes D, Meuleman W, Pagie L, Bruggeman SW, Solovei I, Brugman W, Gräf S, Flicek P, Kerkhoven RM, van Lohuizen M, et al. Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation. Mol Cell 2010; 38:603 - 13; http://dx.doi.org/10.1016/j.molcel.2010.03.016; PMID: 20513434
   PubMed Web of Science ®Google Scholar
• Dechat T, Adam SA, Taimen P, Shimi T, Goldman RD. Nuclear lamins. Cold Spring Harb Perspect Biol 2010; 2:a000547; http://dx.doi.org/10.1101/cshperspect.a000547; PMID: 20826548
   PubMed Web of Science ®Google Scholar
• Dittmer TA, Misteli T. The lamin protein family. Genome Biol 2011; 12:222; http://dx.doi.org/10.1186/gb-2011-12-5-222; PMID: 21639948
   PubMed Web of Science ®Google Scholar
• Simon DN, Wilson KL. The nucleoskeleton as a genome-associated dynamic ‘network of networks’. Nat Rev Mol Cell Biol 2011; 12:695 - 708; http://dx.doi.org/10.1038/nrm3207; PMID: 21971041
   PubMed Web of Science ®Google Scholar
• Reddy KL, Feinberg AP. Higher order chromatin organization in cancer. Semin Cancer Biol 2013; 23:109 - 15; http://dx.doi.org/10.1016/j.semcancer.2012.12.001; PMID: 23266653
   PubMed Web of Science ®Google Scholar
• Davidson PM, Lammerding J. Broken nuclei - lamins, nuclear mechanics, and disease. Trends Cell Biol 2013; http://dx.doi.org/10.1016/j.tcb.2013.11.004; PMID: 24309562
   PubMed Web of Science ®Google Scholar
• Burtner CR, Kennedy BK. Progeria syndromes and ageing: what is the connection?. Nat Rev Mol Cell Biol 2010; 11:567 - 78; http://dx.doi.org/10.1038/nrm2944; PMID: 20651707
   PubMed Web of Science ®Google Scholar
• Cruickshanks HA, McBryan T, Nelson DM, Vanderkraats ND, Shah PP, van Tuyn J, Singh Rai T, Brock C, Donahue G, Dunican DS, et al. Senescent cells harbour features of the cancer epigenome. Nat Cell Biol 2013; 15:1495 - 506; http://dx.doi.org/10.1038/ncb2879; PMID: 24270890
   PubMed Web of Science ®Google Scholar
• Sadaie M, Salama R, Carroll T, Tomimatsu K, Chandra T, Young AR, Narita M, Pérez-Mancera PA, Bennett DC, Chong H, et al. Redistribution of the Lamin B1 genomic binding profile affects rearrangement of heterochromatic domains and SAHF formation during senescence. Genes Dev 2013; 27:1800 - 8; http://dx.doi.org/10.1101/gad.217281.113; PMID: 23964094
   PubMed Web of Science ®Google Scholar
• Shah PP, Donahue G, Otte GL, Capell BC, Nelson DM, Cao K, Aggarwala V, Cruickshanks HA, Rai TS, McBryan T, et al. Lamin B1 depletion in senescent cells triggers large-scale changes in gene expression and the chromatin landscape. Genes Dev 2013; 27:1787 - 99; http://dx.doi.org/10.1101/gad.223834.113; PMID: 23934658
   PubMed Web of Science ®Google Scholar
• Butin-Israeli V, Adam SA, Goldman AE, Goldman RD. Nuclear lamin functions and disease. Trends Genet 2012; 28:464 - 71; http://dx.doi.org/10.1016/j.tig.2012.06.001; PMID: 22795640
   PubMed Web of Science ®Google Scholar
• Gordon LB, Cao K, Collins FS. Progeria: translational insights from cell biology. J Cell Biol 2012; 199:9 - 13; http://dx.doi.org/10.1083/jcb.201207072; PMID: 23027899
   PubMed Web of Science ®Google Scholar
• Worman HJ, Ostlund C, Wang Y. Diseases of the nuclear envelope. Cold Spring Harb Perspect Biol 2010; 2:a000760; http://dx.doi.org/10.1101/cshperspect.a000760; PMID: 20182615
   PubMed Web of Science ®Google Scholar
• Kubben N, Adriaens M, Meuleman W, Voncken JW, van Steensel B, Misteli T. Mapping of lamin A- and progerin-interacting genome regions. Chromosoma 2012; 121:447 - 64; http://dx.doi.org/10.1007/s00412-012-0376-7; PMID: 22610065
   PubMed Web of Science ®Google Scholar
• Montes de Oca R, Shoemaker CJ, Gucek M, Cole RN, Wilson KL. Barrier-to-autointegration factor proteome reveals chromatin-regulatory partners. PLoS One 2009; 4:e7050; http://dx.doi.org/10.1371/journal.pone.0007050; PMID: 19759913
   PubMed Web of Science ®Google Scholar
• Olins AL, Rhodes G, Welch DB, Zwerger M, Olins DE. Lamin B receptor: multi-tasking at the nuclear envelope. Nucleus 2010; 1:53 - 70; PMID: 21327105
   PubMed Web of Science ®Google Scholar
• Zullo JM, Demarco IA, Piqué-Regi R, Gaffney DJ, Epstein CB, Spooner CJ, Luperchio TR, Bernstein BE, Pritchard JK, Reddy KL, et al. DNA sequence-dependent compartmentalization and silencing of chromatin at the nuclear lamina. Cell 2012; 149:1474 - 87; http://dx.doi.org/10.1016/j.cell.2012.04.035; PMID: 22726435
   PubMed Web of Science ®Google Scholar
• Guelen L, Pagie L, Brasset E, Meuleman W, Faza MB, Talhout W, Eussen BH, de Klein A, Wessels L, de Laat W, et al. Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions. Nature 2008; 453:948 - 51; http://dx.doi.org/10.1038/nature06947; PMID: 18463634
   PubMed Web of Science ®Google Scholar
• Kind J, van Steensel B. Genome-nuclear lamina interactions and gene regulation. Curr Opin Cell Biol 2010; 22:320 - 5; http://dx.doi.org/10.1016/j.ceb.2010.04.002; PMID: 20444586
   PubMed Web of Science ®Google Scholar
• Lund E, Oldenburg AR, Delbarre E, Freberg CT, Duband-Goulet I, Eskeland R, Buendia B, Collas P. Lamin A/C-promoter interactions specify chromatin state-dependent transcription outcomes. Genome Res 2013; 23:1580 - 9; http://dx.doi.org/10.1101/gr.159400.113; PMID: 23861385
   PubMed Web of Science ®Google Scholar
• McCord RP, Nazario-Toole A, Zhang H, Chines PS, Zhan Y, Erdos MR, Collins FS, Dekker J, Cao K. Correlated alterations in genome organization, histone methylation, and DNA-lamin A/C interactions in Hutchinson-Gilford progeria syndrome. Genome Res 2013; 23:260 - 9; http://dx.doi.org/10.1101/gr.138032.112; PMID: 23152449
   PubMed Web of Science ®Google Scholar
• Meister P, Taddei A. Building silent compartments at the nuclear periphery: a recurrent theme. Curr Opin Genet Dev 2013; 23:96 - 103; http://dx.doi.org/10.1016/j.gde.2012.12.001; PMID: 23312840
   PubMed Web of Science ®Google Scholar
• Towbin BD, Gonzalez-Sandoval A, Gasser SM. Mechanisms of heterochromatin subnuclear localization. Trends Biochem Sci 2013; 38:356 - 63; http://dx.doi.org/10.1016/j.tibs.2013.04.004; PMID: 23746617
   PubMed Web of Science ®Google Scholar
• Kind J, Pagie L, Ortabozkoyun H, Boyle S, de Vries SS, Janssen H, Amendola M, Nolen LD, Bickmore WA, van Steensel B. Single-cell dynamics of genome-nuclear lamina interactions. Cell 2013; 153:178 - 92; http://dx.doi.org/10.1016/j.cell.2013.02.028; PMID: 23523135
   PubMed Web of Science ®Google Scholar
• Hansen KD, Timp W, Bravo HC, Sabunciyan S, Langmead B, McDonald OG, Wen B, Wu H, Liu Y, Diep D, et al. Increased methylation variation in epigenetic domains across cancer types. Nat Genet 2011; 43:768 - 75; http://dx.doi.org/10.1038/ng.865; PMID: 21706001
   PubMed Web of Science ®Google Scholar
• Jørgensen HF, Fisher AG. LOCKing in Cellular Potential. Cell Stem Cell 2009; 4:192 - 4; http://dx.doi.org/10.1016/j.stem.2009.02.007; PMID: 19265653
   PubMed Web of Science ®Google Scholar
• Ye Q, Worman HJ. Interaction between an integral protein of the nuclear envelope inner membrane and human chromodomain proteins homologous to Drosophila HP1. J Biol Chem 1996; 271:14653 - 6; http://dx.doi.org/10.1074/jbc.271.25.14653; PMID: 8663349
   PubMed Web of Science ®Google Scholar
• Poleshko A, Mansfield KM, Burlingame CC, Andrake MD, Shah NR, Katz RA. The human protein PRR14 tethers heterochromatin to the nuclear lamina during interphase and mitotic exit. Cell Rep 2013; 5:292 - 301; http://dx.doi.org/10.1016/j.celrep.2013.09.024; PMID: 24209742
   PubMed Web of Science ®Google Scholar
• Poleshko A, Einarson MB, Shalginskikh N, Zhang R, Adams PD, Skalka AM, Katz RA. Identification of a functional network of human epigenetic silencing factors. J Biol Chem 2010; 285:422 - 33; http://dx.doi.org/10.1074/jbc.M109.064667; PMID: 19880521
   PubMed Web of Science ®Google Scholar
• Kubben N, Voncken JW, Demmers J, Calis C, van Almen G, Pinto Y, Misteli T. Identification of differential protein interactors of lamin A and progerin. Nucleus 2010; 1:513 - 25; PMID: 21327095
   PubMed Web of Science ®Google Scholar
• Roux KJ, Kim DI, Raida M, Burke B. A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells. J Cell Biol 2012; 196:801 - 10; http://dx.doi.org/10.1083/jcb.201112098; PMID: 22412018
   PubMed Web of Science ®Google Scholar
• Nozawa RS, Nagao K, Masuda HT, Iwasaki O, Hirota T, Nozaki N, Kimura H, Obuse C. Human POGZ modulates dissociation of HP1alpha from mitotic chromosome arms through Aurora B activation. Nat Cell Biol 2010; 12:719 - 27; http://dx.doi.org/10.1038/ncb2075; PMID: 20562864
   PubMed Web of Science ®Google Scholar
• Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, Berriz GF, Gibbons FD, Dreze M, Ayivi-Guedehoussou N, et al. Towards a proteome-scale map of the human protein-protein interaction network. Nature 2005; 437:1173 - 8; http://dx.doi.org/10.1038/nature04209; PMID: 16189514
   PubMed Web of Science ®Google Scholar
• Zeng W, Ball AR Jr., Yokomori K. HP1: heterochromatin binding proteins working the genome. Epigenetics 2010; 5:287 - 92; http://dx.doi.org/10.4161/epi.5.4.11683; PMID: 20421743
   PubMed Web of Science ®Google Scholar
• Lechner MS, Schultz DC, Negorev D, Maul GG, Rauscher FJ 3rd. The mammalian heterochromatin protein 1 binds diverse nuclear proteins through a common motif that targets the chromoshadow domain. Biochem Biophys Res Commun 2005; 331:929 - 37; http://dx.doi.org/10.1016/j.bbrc.2005.04.016; PMID: 15882967
   PubMed Web of Science ®Google Scholar
• Solovei I, Wang AS, Thanisch K, Schmidt CS, Krebs S, Zwerger M, Cohen TV, Devys D, Foisner R, Peichl L, et al. LBR and lamin A/C sequentially tether peripheral heterochromatin and inversely regulate differentiation. Cell 2013; 152:584 - 98; http://dx.doi.org/10.1016/j.cell.2013.01.009; PMID: 23374351
   PubMed Web of Science ®Google Scholar
• Sugimoto K, Tasaka H, Dotsu M. Molecular behavior in living mitotic cells of human centromere heterochromatin protein HPLalpha ectopically expressed as a fusion to red fluorescent protein. Cell Struct Funct 2001; 26:705 - 18; http://dx.doi.org/10.1247/csf.26.705; PMID: 11942629
   PubMed Web of Science ®Google Scholar
• Wang F, Higgins JM. Histone modifications and mitosis: countermarks, landmarks, and bookmarks. Trends Cell Biol 2013; 23:175 - 84; http://dx.doi.org/10.1016/j.tcb.2012.11.005; PMID: 23246430
   PubMed Web of Science ®Google Scholar
• Hirota T, Lipp JJ, Toh BH, Peters JM. Histone H3 serine 10 phosphorylation by Aurora B causes HP1 dissociation from heterochromatin. Nature 2005; 438:1176 - 80; http://dx.doi.org/10.1038/nature04254; PMID: 16222244
   PubMed Web of Science ®Google Scholar
• Zaidi SK, Young DW, Montecino MA, Lian JB, van Wijnen AJ, Stein JL, Stein GS. Mitotic bookmarking of genes: a novel dimension to epigenetic control. Nat Rev Genet 2010; 11:583 - 9; http://dx.doi.org/10.1038/nrg2827; PMID: 20628351
   PubMed Web of Science ®Google Scholar
• Wandke C, Kutay U. Enclosing chromatin: reassembly of the nucleus after open mitosis. Cell 2013; 152:1222 - 5; http://dx.doi.org/10.1016/j.cell.2013.02.046; PMID: 23498932
   PubMed Web of Science ®Google Scholar
• Haraguchi T, Kojidani T, Koujin T, Shimi T, Osakada H, Mori C, Yamamoto A, Hiraoka Y. Live cell imaging and electron microscopy reveal dynamic processes of BAF-directed nuclear envelope assembly. J Cell Sci 2008; 121:2540 - 54; http://dx.doi.org/10.1242/jcs.033597; PMID: 18628300
   PubMed Web of Science ®Google Scholar
• Naumova N, Imakaev M, Fudenberg G, Zhan Y, Lajoie BR, Mirny LA, Dekker J. Organization of the mitotic chromosome. Science 2013; 342:948 - 53; http://dx.doi.org/10.1126/science.1236083; PMID: 24200812
   PubMed Web of Science ®Google Scholar
• Guo G, Huss M, Tong GQ, Wang C, Li Sun L, Clarke ND, Robson P. Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst. Dev Cell 2010; 18:675 - 85; http://dx.doi.org/10.1016/j.devcel.2010.02.012; PMID: 20412781
   PubMed Web of Science ®Google Scholar
• Tang F, Barbacioru C, Bao S, Lee C, Nordman E, Wang X, Lao K, Surani MA. Tracing the derivation of embryonic stem cells from the inner cell mass by single-cell RNA-Seq analysis. Cell Stem Cell 2010; 6:468 - 78; http://dx.doi.org/10.1016/j.stem.2010.03.015; PMID: 20452321
   PubMed Web of Science ®Google Scholar
• Herzog F, Kahraman A, Boehringer D, Mak R, Bracher A, Walzthoeni T, Leitner A, Beck M, Hartl FU, Ban N, et al. Structural probing of a protein phosphatase 2A network by chemical cross-linking and mass spectrometry. Science 2012; 337:1348 - 52; http://dx.doi.org/10.1126/science.1221483; PMID: 22984071
   PubMed Web of Science ®Google Scholar
• Asencio C, Davidson IF, Santarella-Mellwig R, Ly-Hartig TB, Mall M, Wallenfang MR, Mattaj IW, Gorjánácz M. Coordination of kinase and phosphatase activities by Lem4 enables nuclear envelope reassembly during mitosis. Cell 2012; 150:122 - 35; http://dx.doi.org/10.1016/j.cell.2012.04.043; PMID: 22770216
   PubMed Web of Science ®Google Scholar
• Gorjánácz M. LEM-4 promotes rapid dephosphorylation of BAF during mitotic exit. Nucleus 2013; 4:14 - 7; http://dx.doi.org/10.4161/nucl.22961; PMID: 23211644
   PubMed Web of Science ®Google Scholar
• Broers JL, Ramaekers FC, Bonne G, Yaou RB, Hutchison CJ. Nuclear lamins: laminopathies and their role in premature ageing. Physiol Rev 2006; 86:967 - 1008; http://dx.doi.org/10.1152/physrev.00047.2005; PMID: 16816143
   PubMed Web of Science ®Google Scholar
• Fricker M, Hollinshead M, White N, Vaux D. Interphase nuclei of many mammalian cell types contain deep, dynamic, tubular membrane-bound invaginations of the nuclear envelope. J Cell Biol 1997; 136:531 - 44; http://dx.doi.org/10.1083/jcb.136.3.531; PMID: 9024685
   PubMed Web of Science ®Google Scholar