Screening of DNA Aptamer Against Mouse Prion Protein by Competitive Selection

References

• Prusiner SB. Prions. Proc Natl Acad Sci U S A 1998; 95:13363 - 13383
   PubMed Web of Science ®Google Scholar
• White AR, Enever P, Tayebi M, Mushens R, Linehan J, Brandner S, Anstee D, Collinge J, Hawke S. Monoclonal antibodies inhibit prion replication and delay the development of prion disease. Nature 2003; 422:80 - 83
   PubMed Web of Science ®Google Scholar
• Doudna JA, Cech TR, Sullenger BA. Selection of an RNA molecule that mimics a major autoantigenic epitope of human insulin receptor. Proc Natl Acad Sci U S A 1995; 92:2355 - 2359
   PubMed Web of Science ®Google Scholar
• Rusconi CP, Scardino E, Layzer J, Pitoc GA, Ortel TL, Monroe D, Sullenger BA. RNA aptamers as reversible antagonists of coagulation factor IXa. Nature 2002; 419:90 - 94
   PubMed Web of Science ®Google Scholar
• Proske D, Gilch S, Wopfner F, Schatzl HM, Winnacker EL, Famulok M. Prion-protein-specific aptamer reduces PrPSc formation. Chembiochem 2002; 3:717 - 725
   PubMed Web of Science ®Google Scholar
• Rhie A, Kirby L, Sayer N, Wellesley R, Disterer P, Sylvester I, Gill A, Hope J, James W, Tahiri-Alaoui A. Characterization of 2′-fluoro-RNA aptamers that bind preferentially to disease-associated conformations of prion protein and inhibit conversion. J Biol Chem 2003; 278:39697 - 39705
   PubMed Web of Science ®Google Scholar
• Davidowitz E, Eljuga L, Dover K, Tian J, Grossman A. Concentration of prion protein from biological samples to increase the limits of detection by immunoassay. Biotechnol Appl Biochem 2005; 41:247 - 253
   PubMed Web of Science ®Google Scholar
• Sekiya S, Noda K, Nishikawa F, Yokoyama T, Kumar PK, Nishikawa S. Characterization and application of a novel RNA aptamer against the mouse prion protein. J Biochem (Tokyo) 2006; 139:383 - 390
   PubMed Web of Science ®Google Scholar
• Takemura K, Wang P, Vorberg I, Surewicz W, Priola SA, Kanthasamy A, Pottathil R, Chen SG, Sreevatsan S. DNA aptamers that bind to PrP(C) and not PrP(Sc) show sequence and structure specificity. Exp Biol Med (Maywood) 2006; 231:204 - 214
   Google Scholar
• King DJ, Safar JG, Legname G, Prusiner SB. Thioaptamer interactions with prion proteins: sequence-specific and non-specific binding sites. J Mol Biol 2007; 369:1001 - 1014
   PubMed Web of Science ®Google Scholar
• Mercey R, Lantier I, Maurel MC, Grosclaude J, Lantier F, Marc D. Fast, reversible interaction of prion protein with RNA aptamers containing specific sequence patterns. Arch Virol 2006; 151:2197 - 2214
   PubMed Web of Science ®Google Scholar
• Weiss S, Proske D, Neumann M, Groschup MH, Kretzschmar HA, Famulok M, Winnacker EL. RNA aptamers specifically interact with the prion protein PrP. J Virol 1997; 71:8790 - 8797
   PubMed Web of Science ®Google Scholar
• Tuerk C, Gold L. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 1990; 249:505 - 510
   PubMed Web of Science ®Google Scholar
• Gabus C, Auxilien S, Pechoux C, Dormont D, Swietnicki W, Morillas M, Surewicz W, Nandi P, Darlix JL. The prion protein has DNA strand transfer properties similar to retroviral nucleocapsid protein. J Mol Biol 2001; 307:1011 - 1021
   PubMed Web of Science ®Google Scholar
• Gabus C, Derrington E, Leblanc P, Chnaiderman J, Dormont D, Swietnicki W, Morillas M, Surewicz WK, Marc D, Nandi P, Darlix JL. The prion protein has RNA binding and chaperoning properties characteristic of nucleocapsid protein NCP7 of HIV-1. J Biol Chem 2001; 276:19301 - 19309
   Google Scholar
• Lima LM, Cordeiro Y, Tinoco LW, Marques AF, Oliveira CL, Sampath S, Kodali R, Choi G, Foguel D, Torriani I, Caughey B, Silva JL. Structural insights into the interaction between prion protein and nucleic acid. Biochemistry 2006; 45:9180 - 9187
   PubMed Web of Science ®Google Scholar
• Hornemann S, Korth C, Oesch B, Riek R, Wider G, Wuthrich K, Glockshuber R. Recombinant full-length murine prion protein, mPrP(23–231): purification and spectroscopic characterization. FEBS Lett 1997; 413:277 - 281
   PubMed Web of Science ®Google Scholar
• Bocharova OV, Breydo L, Parfenov AS, Salnikov VV, Baskakov IV. In vitro conversion of full-length mammalian prion protein produces amyloid form with physical properties of PrP(Sc). J Mol Biol 2005; 346:645 - 659
   PubMed Web of Science ®Google Scholar
• Igarashi S, Ohtera T, Yoshida H, Witarto AB, Sode K. Construction and characterization of mutant water-soluble PQQ glucose dehydrogenases with altered K(m) values—site-directed mutagenesis studies on the putative active site. Biochem Biophys Res Commun 1999; 264:820 - 824
   PubMed Web of Science ®Google Scholar
• Green A, Sarkar B. Alteration of zif268 zinc-finger motifs gives rise to non-native zinc-co-ordination sites but preserves wild-type DNA recognition. Biochem J 1998; 333:85 - 90
   PubMed Web of Science ®Google Scholar
• Noma T, Ikebukuro K, Sode K, Ohkubo T, Sakasegawa Y, Hachiya N, Kaneko K. A screening method for DNA aptamers that bind to a specific, unidentified protein in tissue samples. Biotechnol Lett 2006; 28:1377 - 1381
   PubMed Web of Science ®Google Scholar
• Cao XM, Koski RA, Gashler A, McKiernan M, Morris CF, Gaffney R, Hay RV, Sukhatme VP. Identification and characterization of the Egr-1 gene product, a DNA-binding zinc finger protein induced by differentiation and growth signals. Mol Cell Biol 1990; 10:1931 - 1939
   PubMed Web of Science ®Google Scholar
• Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 2003; 31:3406 - 3415
   PubMed Web of Science ®Google Scholar
• Green LS, Jellinek D, Jenison R, Ostman A, Heldin CH, Janjic N. Inhibitory DNA ligands to platelet-derived growth factor B-chain. Biochemistry 1996; 35:14413 - 14424
   PubMed Web of Science ®Google Scholar
• Hicke BJ, Watson SR, Koenig A, Lynott CK, Bargatze RF, Chang YF, Ringquist S, Moon-McDermott L, Jennings S, Fitzwater T, Han HL, Varki N, Albinana I, Willis MC, Varki A, Parma D. DNA aptamers block L-selectin function in vivo. Inhibition of human lymphocyte trafficking in SCID mice. J Clin Invest 1996; 98:2688 - 2692
   PubMed Web of Science ®Google Scholar
• Mendonsa SD, Bowser MT. In vitro selection of high-affinity DNA ligands for human IgE using capillary electrophoresis. Anal Chem 2004; 76:5387 - 5392
   PubMed Web of Science ®Google Scholar
• Misono TS, Kumar PK. Selection of RNA aptamers against human influenza virus hemagglutinin using surface plasmon resonance. Anal Biochem 2005; 342:312 - 317
   PubMed Web of Science ®Google Scholar
• Plummer KA, Carothers JM, Yoshimura M, Szostak JW, Verdine GL. In vitro selection of RNA aptamers against a composite small molecule-protein surface. Nucleic Acids Res 2005; 33:5602 - 5610
   PubMed Web of Science ®Google Scholar